BAC Information

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BAC

Clone NameB6Ng01-324K15
Chromosome12 (Build37)
Map Location 40,958,377 - 41,146,072
singlet/doubletdoublet
Overlap geneZfp277
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneDock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324K15.bB6Ng01-324K15.g
ACCGA112919GA112920
length1,0811,145
definitionB6Ng01-324K15.b B6Ng01-324K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,144,997 - 41,146,072)(40,958,377 - 40,959,526)
sequence
gaattctttatccatacacaaaactcaaacaagatcaaggcagctagact
cccaacgtggctagggaaaaggctcaagttcaacccctatctaagaaaat
attaaccattgatggctgccaaaggaaggagagtccattttcttcaggaa
tgtcagctcagagaggctattttctccagttgatggtccaacatccatgc
ataaagagaaagcatcaaaatccacaagctgtggatttgtgaggtgagag
ggcagcagagagagagagattgagaaagtgtgagcatcaaaataaaacaa
aacaaaacaaaaaaccaaaaaagagaaagcgtgagcaagtacacatgggg
ataaggagttaaatgaaggatgcccttcattaaaacacattatatgtatg
gatggatatgtatttatccagtcagtcagtcagtcatttgttttggtttt
tcaaggcagtatagctttggttatcctagaacctactctgaagaccagaa
tggcctcaaactcagaaatccacctgcctctattccaaatgctggaatta
agggtatgtgataccattgcccggtatggatattaagtaaaatgcttttt
taaaaaaaggttatgattctttgagattatagtatatcaagactttgaaa
cctaggataggagcatatgcttgtatctttatgttctgaatactcacttg
gtgtttgtggacaaatgataaaggtcaaagctatgagaaattcatttcca
gctaatagatggtaacggtttagtctctgtgaagtatgagcctgactagc
catgttccagcttgggaggggaatgaagaagtggctgtgtttgagacggc
tgcagtgcatgcactctcagctttgcctctcagtcgtgactgtaccctga
gattggcctatcaactagcgttaaagtcaaaagagtgtgagtggctctga
aggagtaggtgggattttatgaaagattgactcctatcttattttttttc
attttgatcattacttggagaagcagaaggcctgagtattctttccatag
tgaaagcccaaatgaagaacacatgttaatg

gaattcctcactcctgtcatctgctgttttgtacgtagaatgtaccaaca
tagggctactgcccactttctgccgcctccacagacttctgtccaaggac
accctgttaaaactctctatttggagtgtttccttccctccacaccctct
cttatcatgtatgactgtttttaagggactttttccctaccctcttcttt
ttttctctatccttagtgttcctcattaacagttttcctttcttttcttg
accataacaggactcctccttattgtttgttgttcctaattggcaagatt
cttttcttaactgaaacatcttccaataggagaaatcgagttttctcagt
ggtatttcagttggctaactttgctcatgattcatgaatggctttgtttc
cttctaaagcagactgctgtggtaggtaagtaatggtaccttctctataa
acaaacactgagaaaatgaagtgaaagccactctcccaactatagttatc
taacaagggtatgactgttatctctttgaaggctgtttctttattctctt
tattttcatagcttattctgagttatggggatgcaggaagtatcttctag
ccacagttatttccacttatgtatctatccaaaccagttttcctttgtct
cctggttctgcttctcaaaatgcagttaagaagccttaggctgatcaagt
aactctagtgagtcagcaacttctatacttttattgtttccttaaatgct
catggcaatatcttcttacccttgttctccatgtccgacatctttacctt
aatccaccctcttccacctccaaaagtgtagttttacaataccatttcac
accatataaattaaaatatctgtctacatgtctgcttttataaataaagt
agtatttatacttcaccagtatgatggttttgtatattcttgggaccaag
gagttgtaccatttggaggtgtgggcctgttggaatagtgtgacctggtt
ggagtagtgtgtcactggtgggtgtgagctaatactctcaccctagttgc
ttggagttagtctccaggcttctgctgatataatggactgtaatcttcta
aacctgtaagcaggccccaataaatggttgtcctgataagacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41144997_41146072
seq2: B6Ng01-324K15.b_47_1127 (reverse)

seq1  CATTAACATGT-TTCTTC-TTTTGGCTTTCAACTATGGAA--GATACTCA  46
      ||||||||||| |||||| ||| ||||||| |||||||||   |||||||
seq2  CATTAACATGTGTTCTTCATTTGGGCTTTC-ACTATGGAAAGAATACTCA  49

seq1  -GCCTTCTGGCTCTTC-AGTATTGATCAAAATGAAAAAAAATAAGATA-G  93
       ||||||||  ||| | |||| |||||||||||||||||||||||||| |
seq2  GGCCTTCTGCTTCTCCAAGTAATGATCAAAATGAAAAAAAATAAGATAGG  99

seq1  AGTCAATCTTTCATAAAATCCCACCTACTCCTTCAGAGCCACTCACACTC  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCTTTCATAAAATCCCACCTACTCCTTCAGAGCCACTCACACTC  149

seq1  TTTTGACTTTAACGCTAGTTGATAGGCCAATCTCAGGGTACAGTCACGAC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTTAACGCTAGTTGATAGGCCAATCTCAGGGTACAGTCACGAC  199

seq1  TGAGAGGCAAAGCCTGAGAGTGCATGCACTGCAGCCGTCTCAAACACAGC  243
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCAAAG-CTGAGAGTGCATGCACTGCAGCCGTCTCAAACACAGC  248

seq1  CACTTCTTCATTCCCCTCCCAAGCTGGAACATGGCTAGTCAGGCTCATAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTCATTCCCCTCCCAAGCTGGAACATGGCTAGTCAGGCTCATAC  298

seq1  TTCACAGAGACTAAACCGTTACCATCTATTAGCTGGAAATGAATTTCTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGACTAAACCGTTACCATCTATTAGCTGGAAATGAATTTCTCA  348

seq1  TAGCTTTGACCTTTATCATTTGTCCACAAACACCAAGTGAGTATTCAGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTGACCTTTATCATTTGTCCACAAACACCAAGTGAGTATTCAGAA  398

seq1  CATAAAGATACAAGCATATGCTCCTATCCTAGGTTTCAAAGTCTTGATAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGATACAAGCATATGCTCCTATCCTAGGTTTCAAAGTCTTGATAT  448

seq1  ACTATAATCTCAAAGAATCATAACCTTTTTTTAAAAAAGCATTTTACTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCTCAAAGAATCATAACCTTTTTTTAAAAAAGCATTTTACTTA  498

seq1  ATATCCATACCGGGCAATGGTATCACATACCCTTAATTCCAGCATTTGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATACCGGGCAATGGTATCACATACCCTTAATTCCAGCATTTGGA  548

seq1  ATAGAGGCAGGTGGATTTCTGAGTTTGAGGCCATTCTGGTCTTCAGAGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCAGGTGGATTTCTGAGTTTGAGGCCATTCTGGTCTTCAGAGTA  598

seq1  GGTTCTAGGATAACCAAAGCTATACTGCCTTGAAAAACCAAAACAAATGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGGATAACCAAAGCTATACTGCCTTGAAAAACCAAAACAAATGA  648

seq1  CTGACTGACTGACTGGATAAATACATATCCATCCATACATATAATGTGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGACTGACTGGATAAATACATATCCATCCATACATATAATGTGTT  698

seq1  TTAATGAAGGGCATCCTTCATTTAACTCCTTATCCCCATGTGTACTTGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAGGGCATCCTTCATTTAACTCCTTATCCCCATGTGTACTTGCT  748

seq1  CACGCTTTCTCTTTTTTGGTTTTTTGTTTTGTTTTGTTTTATTTTGATGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTTCTCTTTTTTGGTTTTTTGTTTTGTTTTGTTTTATTTTGATGC  798

seq1  TCACACTTTCTCAATCTCTCTCTCTCTGCTGCCCTCTCACCTCACAAATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTTCTCAATCTCTCTCTCTCTGCTGCCCTCTCACCTCACAAATC  848

seq1  CACAGCTTGTGGATTTTGATGCTTTCTCTTTATGCATGGATGTTGGACCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGTGGATTTTGATGCTTTCTCTTTATGCATGGATGTTGGACCA  898

seq1  TCAACTGGAGAAAATAGCCTCTCTGAGCTGACATTCCTGAAGAAAATGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGAGAAAATAGCCTCTCTGAGCTGACATTCCTGAAGAAAATGGA  948

seq1  CTCTCCTTCCTTTGGCAGCCATCAATGGTTAATATTTTCTTAGATAGGGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCCTTTGGCAGCCATCAATGGTTAATATTTTCTTAGATAGGGG  998

seq1  TTGAACTTGAGCCTTTTCCCTAGCCACGTTGGGAGTCTAGCTGCCTTGAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTGAGCCTTTTCCCTAGCCACGTTGGGAGTCTAGCTGCCTTGAT  1048

seq1  CTTGTTTGAGTTTTGTGTATGGATAAAGAATTC  1076
      |||||||||||||||||||||||||||||||||
seq2  CTTGTTTGAGTTTTGTGTATGGATAAAGAATTC  1081


seq1: chr12_40958377_40959526
seq2: B6Ng01-324K15.g_68_1212

seq1  GAATTCCTCACTCCTGTCATCTGCTGTTTTGTACGTAGAATGTACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTCCTGTCATCTGCTGTTTTGTACGTAGAATGTACCAACA  50

seq1  TAGGGCTACTGCCCACTTTCTGCCGCCTCCACAGACTTCTGTCCAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTACTGCCCACTTTCTGCCGCCTCCACAGACTTCTGTCCAAGGAC  100

seq1  ACCCTGTTAAAACTCTCTATTTGGAGTGTTTCCTTCCCTCCACACCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTAAAACTCTCTATTTGGAGTGTTTCCTTCCCTCCACACCCTCT  150

seq1  CTTATCATGTATGACTGTTTTTAAGGGACTTTTTCCCTACCCTCTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTATGACTGTTTTTAAGGGACTTTTTCCCTACCCTCTTCTTT  200

seq1  TTTTCTCTATCCTTAGTGTTCCTCATTAACAGTTTTCCTTTCTTTTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTATCCTTAGTGTTCCTCATTAACAGTTTTCCTTTCTTTTCTTG  250

seq1  ACCATAACAGGACTCCTCCTTATTGTTTGTTGTTCCTAATTGGCAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAACAGGACTCCTCCTTATTGTTTGTTGTTCCTAATTGGCAAGATT  300

seq1  CTTTTCTTAACTGAAACATCTTCCAATAGGAGAAATCGAGTTTTCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTAACTGAAACATCTTCCAATAGGAGAAATCGAGTTTTCTCAGT  350

seq1  GGTATTTCAGTTGGCTAACTTTGCTCATGATTCATGAATGGCTTTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCAGTTGGCTAACTTTGCTCATGATTCATGAATGGCTTTGTTTC  400

seq1  CTTCTAAAGCAGACTGCTGTGGTAGGTAAGTAATGGTACCTTCTCTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAGCAGACTGCTGTGGTAGGTAAGTAATGGTACCTTCTCTATAA  450

seq1  ACAAACACTGAGAAAATGAAGTGAAAGCCACTCTCCCAACTATAGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACTGAGAAAATGAAGTGAAAGCCACTCTCCCAACTATAGTTATC  500

seq1  TAACAAGGGTATGACTGTTATCTCTTTGAAGGCTGTTTCTTTATTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGGTATGACTGTTATCTCTTTGAAGGCTGTTTCTTTATTCTCTT  550

seq1  TATTTTCATAGCTTATTCTGAGTTATGGGGATGCAGGAAGTATCTTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAGCTTATTCTGAGTTATGGGGATGCAGGAAGTATCTTCTAG  600

seq1  CCACAGTTATTTCCACTTATGTATCTATCCAAACCAGTTTTCCTTTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTATTTCCACTTATGTATCTATCCAAACCAGTTTTCCTTTGTCT  650

seq1  CCTGGTTCTGCTTCTCAAAATGCAGTTAAGAAGCCTTAGGCTGATCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTCTGCTTCTCAAAATGCAGTTAAGAAGCCTTAGGCTGATCAAGT  700

seq1  AACTCTAGTGAGTCAGCAACTTCTATACTTTTATTGTTTCCTTAAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGTGAGTCAGCAACTTCTATACTTTTATTGTTTCCTTAAATGCT  750

seq1  CATGGCAATATCTTCTTACCCTTGTTCTCCATGTCCGACATCTTTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAATATCTTCTTACCCTTGTTCTCCATGTCCGACATCTTTACCTT  800

seq1  AATCCACCCTCTTCCACCTCCAAAAGTGTAGTTTTACAATACCATTTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCCTCTTCCACCTCCAAAAGTGTAGTTTTACAATACCATTTCAC  850

seq1  ACCATATAAATTAAAATATCTGTCTACATGTCTGCTTTTATAAATAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAAATTAAAATATCTGTCTACATGTCTGCTTTTATAAATAAAGT  900

seq1  AGTATTTATACTTCACCAGTATGATGG-TTTGTATATTCTT-GGACCAAG  948
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AGTATTTATACTTCACCAGTATGATGGTTTTGTATATTCTTGGGACCAAG  950

seq1  GAGTGGTACCATTTGGAGGTGTGGCCCTGTTGGAATAGGTGTGACCTGGT  998
      |||| ||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GAGTTGTACCATTTGGAGGTGTGGGCCTGTTGGAATA-GTGTGACCTGGT  999

seq1  TGGAGTAGGTGTGTCACT-GTGGGTGTGAGCCTAATACTCTCACCCTAGT  1047
      ||||||| |||||||||| ||||||||||| |||||||||||||||||||
seq2  TGGAGTA-GTGTGTCACTGGTGGGTGTGAG-CTAATACTCTCACCCTAGT  1047

seq1  TGCCTGGAAGTCAGTCTTCCAAGGCTCCTGCCTTGATTATAATGGACTG-  1096
      ||| ||| ||| |||||  | ||||| ||||  ||| |||||||||||| 
seq2  TGCTTGG-AGTTAGTCT--CCAGGCTTCTGC--TGA-TATAATGGACTGT  1091

seq1  -AACCTCTAAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTTATAAG  1145
       | | |||||||||||||||  |||||||| ||  ||||||| | |||||
seq2  AATCTTCTAAACCTGTAAGCAGGCCCCAATAAATGGTTGTCC-TGATAAG  1140

seq1  ACTTG  1150
      |||||
seq2  ACTTG  1145


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