BAC Information

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BAC

Clone NameB6Ng01-327H09
Chromosome12 (Build37)
Map Location 86,086,960 - 86,285,783
singlet/doubletdoublet
Overlap geneNpc2, Isca2, Ltbp2, 1110018G07Rik
Upstream genePapln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
Downstream geneFcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327H09.bB6Ng01-327H09.g
ACCGA115001GA115002
length1,155871
definitionB6Ng01-327H09.b B6Ng01-327H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,284,633 - 86,285,783)(86,086,960 - 86,087,819)
sequence
gaattcccttgaagggtaagatttgttgatccagtgagaaatcatgtcct
ttgtaattgttaatacatttctccctgaatttcctgtcagctctgaagca
aaggaggtatgatgctggttctatagataagcagcacaaagactgaaagc
tcactgcagttctaggctgacgtgttagcccactaagtcctaataacacc
caagtgaggtgcctgtgagtactctctccatttgacagagaagaaaactg
gctctcagtggagagattaggtggcttggccagggtcacagtttgagctt
atgaatctgactgaaggatggaggcatctgtctgcttgctcctctgtgtt
tcactatttgttccactctgcctttagagctgtcagtactctgatgaact
atgccagagttatgctaaggaggtgaagatagtaaatcctaacttgttaa
agcagcaagaactgtcacacccatggaggtgtagattagctatcgccctg
gcccttccttcctgttttggtttgccgtttgccagctgcctcatggtggg
caaaaggttgtaattgtcagaggcaggtaggcactttcctgtccttgtgt
ctcaagccatgtgtcacctctctctctcttaaaaccttgacgcacaatca
gatataaatgcacacaggtgcctgttctcctttcccttttcaaattgttc
tgtgctctccaaggttggagtctagaaatctttagatgtctagtctctga
gtgcgggatgctgatgtacgaattgggggaaaacaagttgagtaacagtg
aaaattccccctcagactctggtcttagtggacaccacttaggatggaag
gtttcatcccctcctttttttccacaactctgctttctgttgaatccatc
ttccctagggcccatccgtttgtctgatctggtaatgtcacgaatgactc
ctccttttgtacccgctacttattattgggatgacccagagttcactttg
cttcttgatgctagcatgacgatcatatttacttgttaaaaaatatctca
tttatattagctgttttttctactttagcctgaatggcttcagaagggca
gaataacatggggggaagtgcctccattattcctcttcatgttctaatta
gcagc
gaattcctgaccctactggcattgcagacatatctcaccacacccagatc
tttcttcttagtttcttttcatttgtttattttgcctattggcggttttt
tttgtttttgtttttttgttttgttttgttttttgttttttttgtttttt
ttttttttggcgggcttttgctatcccgatttcttagctccctacatgtt
gcttacgggtcttgttctctggtaactgaatagaggtttgctttctctcc
ttcctcccgggaggaacaggaggcacggtggctgtggatctgtaatacag
agctgctgaaagttgtcgaggttgtgctcaggtagcacacaaagtgggga
gcttggggggagggagtgacagcagccagggaccctgagaaaggatgttg
ggggagttaacagagttaacagggcttcttcctcctgtcccctgcagaga
gccaggctcagtgaccactctcctatctccaggagcctctcaggttagat
cctttgttgacttggggattaggagaggaaaagaaggcccctcccgcagg
cctccccatacacctcctgctcctcctgctttctcttcctggtccccgtg
gctttgctgcttgggtatctcccacagattttatctgcaggtatgttatc
tacttagatcccaggaattccttgggccagacagagagccagcactgtgc
atggttttaaagtgcctagtgttaaaacagacagagcttcaaggggctga
cgtttagttccttggggtctatgaaaacaaagataacattggaaccacga
agaaaattattttctcttattgacaactcaggaaatatcattctctctct
tccggcttttttctctcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86284633_86285783
seq2: B6Ng01-327H09.b_47_1201 (reverse)

seq1  GCTGCTAATTAGGACAAGGAAAGAGG-ATAATGGA-GCACTT-CCCCCAT  47
      |||||||||||| ||| |  |||||| |||||||| |||||| |||||||
seq2  GCTGCTAATTAGAACATG--AAGAGGAATAATGGAGGCACTTCCCCCCAT  48

seq1  GTTA-TCTGCCC-TCTGAAAGCAATCCAGCT-AAGTAGAAAAAACAGCT-  93
      |||| ||||||| ||||||  || ||  ||| ||||||||||||||||| 
seq2  GTTATTCTGCCCTTCTGAAGCCATTCAGGCTAAAGTAGAAAAAACAGCTA  98

seq1  ATATAAATTGAAGATATTTTTT-ACAAGTAAATATGATCGTCATGCTAGC  142
      ||||||||   ||||||||||| |||||||||||||||||||||||||||
seq2  ATATAAAT--GAGATATTTTTTAACAAGTAAATATGATCGTCATGCTAGC  146

seq1  ATCAAGAAAGCAAAGTGAACTCTGGGTCATCCCAATAATAAGTAGCGGGT  192
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAG-AAGCAAAGTGAACTCTGGGTCATCCCAATAATAAGTAGCGGGT  195

seq1  AC-AAAGGAGGAGTCATTCGTGACATTACCAGATCAGACAAACGGATGGG  241
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAGGAGTCATTCGTGACATTACCAGATCAGACAAACGGATGGG  245

seq1  CCCTAGGGAAGATGGATTCAACAGAAAGCAGAGTTGTGGAAAAAAAGGAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGGAAGATGGATTCAACAGAAAGCAGAGTTGTGGAAAAAAAGGAG  295

seq1  GGGATGAAACCTTCCATCCTAAGTGGTGTCCACTAAGACCAGAGTCTGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAAACCTTCCATCCTAAGTGGTGTCCACTAAGACCAGAGTCTGAG  345

seq1  GGGGAATTTTCACTGTTACTCAACTTGTTTTCCCCCAATTCGTACATCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTTTCACTGTTACTCAACTTGTTTTCCCCCAATTCGTACATCAG  395

seq1  CATCCCGCACTCAGAGACTAGACATCTAAAGATTTCTAGACTCCAACCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGCACTCAGAGACTAGACATCTAAAGATTTCTAGACTCCAACCTT  445

seq1  GGAGAGCACAGAACAATTTGAAAAGGGAAAGGAGAACAGGCACCTGTGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCACAGAACAATTTGAAAAGGGAAAGGAGAACAGGCACCTGTGTG  495

seq1  CATTTATATCTGATTGTGCGTCAAGGTTTTAAGAGAGAGAGAGGTGACAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATCTGATTGTGCGTCAAGGTTTTAAGAGAGAGAGAGGTGACAC  545

seq1  ATGGCTTGAGACACAAGGACAGGAAAGTGCCTACCTGCCTCTGACAATTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGAGACACAAGGACAGGAAAGTGCCTACCTGCCTCTGACAATTA  595

seq1  CAACCTTTTGCCCACCATGAGGCAGCTGGCAAACGGCAAACCAAAACAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTTGCCCACCATGAGGCAGCTGGCAAACGGCAAACCAAAACAGG  645

seq1  AAGGAAGGGCCAGGGCGATAGCTAATCTACACCTCCATGGGTGTGACAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGCCAGGGCGATAGCTAATCTACACCTCCATGGGTGTGACAGT  695

seq1  TCTTGCTGCTTTAACAAGTTAGGATTTACTATCTTCACCTCCTTAGCATA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGCTTTAACAAGTTAGGATTTACTATCTTCACCTCCTTAGCATA  745

seq1  ACTCTGGCATAGTTCATCAGAGTACTGACAGCTCTAAAGGCAGAGTGGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCATAGTTCATCAGAGTACTGACAGCTCTAAAGGCAGAGTGGAA  795

seq1  CAAATAGTGAAACACAGAGGAGCAAGCAGACAGATGCCTCCATCCTTCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTGAAACACAGAGGAGCAAGCAGACAGATGCCTCCATCCTTCAG  845

seq1  TCAGATTCATAAGCTCAAACTGTGACCCTGGCCAAGCCACCTAATCTCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCATAAGCTCAAACTGTGACCCTGGCCAAGCCACCTAATCTCTC  895

seq1  CACTGAGAGCCAGTTTTCTTCTCTGTCAAATGGAGAGAGTACTCACAGGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGCCAGTTTTCTTCTCTGTCAAATGGAGAGAGTACTCACAGGC  945

seq1  ACCTCACTTGGGTGTTATTAGGACTTAGTGGGCTAACACGTCAGCCTAGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTTGGGTGTTATTAGGACTTAGTGGGCTAACACGTCAGCCTAGA  995

seq1  ACTGCAGTGAGCTTTCAGTCTTTGTGCTGCTTATCTATAGAACCAGCATC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTGAGCTTTCAGTCTTTGTGCTGCTTATCTATAGAACCAGCATC  1045

seq1  ATACCTCCTTTGCTTCAGAGCTGACAGGAAATTCAGGGAGAAATGTATTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCCTTTGCTTCAGAGCTGACAGGAAATTCAGGGAGAAATGTATTA  1095

seq1  ACAATTACAAAGGACATGATTTCTCACTGGATCAACAAATCTTACCCTTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACAAAGGACATGATTTCTCACTGGATCAACAAATCTTACCCTTC  1145

seq1  AAGGGAATTC  1151
      ||||||||||
seq2  AAGGGAATTC  1155

seq1: chr12_86086960_86087819
seq2: B6Ng01-327H09.g_65_929

seq1  GAATTCCTGACCCTACTGGCATTGCAGACATATCTCACCACACCCAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCCTACTGGCATTGCAGACATATCTCACCACACCCAGATC  50

seq1  TTTCTTCTTAGTTTCTTTTCATTTGTTTATTTTGCCTATTGGCGGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTAGTTTCTTTTCATTTGTTTATTTTGCCTATTGGCGGTTTTT  100

seq1  TTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTGTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTGTTTTTT  150

seq1  TTTTTTTTGGCGGGCTTTTGCTATCCCGATTTCTTAGCTCCCTACATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGGCGGGCTTTTGCTATCCCGATTTCTTAGCTCCCTACATGTT  200

seq1  GCTTACGGGTCTTGTTCTCTGGTAACTGAATAGAGGTTTGCTTTCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGGGTCTTGTTCTCTGGTAACTGAATAGAGGTTTGCTTTCTCTCC  250

seq1  TTCCTCCCGGGAGGAACAGGAGGCACGGTGGCTGTGGATCTGTAATACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCGGGAGGAACAGGAGGCACGGTGGCTGTGGATCTGTAATACAG  300

seq1  AGCTGCTGAAAGTTGTCGAGGTTGTGCTCAGGTAGCACACAAAGTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGAAAGTTGTCGAGGTTGTGCTCAGGTAGCACACAAAGTGGGGA  350

seq1  GCTTGGGGGGAGGGAGTGACAGCAGCCAGGGACCCTGAGAAAGGATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGGGAGGGAGTGACAGCAGCCAGGGACCCTGAGAAAGGATGTTG  400

seq1  GGGGAGTTAACAGAGTTAACAGGGCTTCTTCCTCCTGTCCCCTGCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTTAACAGAGTTAACAGGGCTTCTTCCTCCTGTCCCCTGCAGAGA  450

seq1  GCCAGGCTCAGTGACCACTCTCCTATCTCCAGGAGCCTCTCAGGTTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTCAGTGACCACTCTCCTATCTCCAGGAGCCTCTCAGGTTAGAT  500

seq1  CCTTTGTTGACTTGGGGATTAGGAGAGGAAAAGAAGGCCCCTCCCGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTGACTTGGGGATTAGGAGAGGAAAAGAAGGCCCCTCCCGCAGG  550

seq1  CCTCCCCATACACCTCCTGCTCCTCCTGCTTTCTCTTCCTGGTCCCCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCATACACCTCCTGCTCCTCCTGCTTTCTCTTCCTGGTCCCCGTG  600

seq1  GCTTTGCTGCTTGGGTATCTCCCACAGATTTTATCTGCAGGTATGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTGCTTGGGTATCTCCCACAGATTTTATCTGCAGGTATGTTATC  650

seq1  TACTTAGATCCCAGGAATTCCTTGGGCCAGACAGAGAGCCAGCACTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATCCCAGGAATTCCTTGGGCCAGACAGAGAGCCAGCACTGTGC  700

seq1  ATGGTTTTAAGGTGCCTAGTGTTAAAACAGACAGAGCTTCAAGGGGCTGA  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAAAGTGCCTAGTGTTAAAACAGACAGAGCTTCAAGGGGCTGA  750

seq1  CGTTT-GTTCC-TGGGGTCTATGAAAACAAAGATAACATTGGAACCACGA  798
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGTTCCTTGGGGTCTATGAAAACAAAGATAACATTGGAACCACGA  800

seq1  AGAAAATAATTT--CCTTATAGACAACTCAGGAAATTTCATTCTCTCTCT  846
      ||||||| ||||   ||||| ||||||||||||||| |||||||||||||
seq2  AGAAAATTATTTTCTCTTATTGACAACTCAGGAAATATCATTCTCTCTCT  850

seq1  T-CTGCTTTTTTCTC  860
      | | |||||||||||
seq2  TCCGGCTTTTTTCTC  865