BAC Information

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BAC

Clone NameB6Ng01-327L23
Chromosome12 (Build37)
Map Location 9,987,086 - 10,039,136
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr35, Ttc32, LOC633030, LOC100042238, Osr1
Downstream geneLOC382567, Nt5c1b, Rdh14, LOC238074, LOC100042308, EG668435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327L23.bB6Ng01-327L23.g
ACCGA115205GA115206
length1,173616
definitionB6Ng01-327L23.b B6Ng01-327L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,037,957 - 10,039,136)(9,987,086 - 9,987,894)
sequence
gaattcccaaatccttgcctttgtctctgaatggtgttattccttcaggt
tttctactctggataaaggtctatcccaataatgacatcttaattagatc
acccgaaaagactccacttgtcaataaggtacaattttgaggctttagaa
tagtgaacttaccaggggtttggaataatatggctttcttaaactcatat
taatttgcacttacagaggaaagatggttcacttgcacagtgtaaaggaa
gagggagaaatggacatgactcccatgtgaccctcaggaaactcccagat
agagtggacttagaattgacagctcaattcctttgtagagatgaagactc
acccatccctgcacccaaatgtgacactacctttacaaagcaaaatgctg
gaaacactttcaaatttgtttggttttctggtatgggtgggtgtgtgctt
tgcctggcaaaataaacatttcagtccattccttaatttcaattttcagt
gtgaatttatgaaacattgtctagcatgtagtggtttcttctgaagggaa
gactaggtcaatcagttctcagttcatgaccaccgagcatcctgctgaat
ccattctttggcaaggtctacctatgctttcctgctttcccaggtggttg
tcagctatcctcagtaattgtcttgtcattcagattcatcagtggggagt
ccttcttagtattctccaaagttcccaagaccttgtgtgaccccttgtta
atctgtgcacatgttctcagaagtagcttagagaaagctgccaatgtttg
catagcagtccagttttccttctggtaaagtacaccacaccttcaaactg
ttctaactgggttcactgagggaaactgaacaaagaatagtataatttga
tacattttaatacttttatctatccatctgtgcttcccaggcaataagca
tatccaccaaccatacatagattgtttcctgtatccatattcagtggaat
cctgtctctctgattcctttatatgtcccagggaatattccacatatttt
taatttttttatttatcaataatggaagtgtttattctttaccatgcctt
tgcagtatctcacatgacttttggatactctatgcctatcaataattaac
gtgaattcttcatgggtaatatt

gaattcttagaagtgcaatatttgggcaggcaaatgaagatagccttctc
tgtgatattggataaattatcccaccagtatcacatggttagtcaaagca
tcagtttaatgaatgtcaagctgggcagtggtggtgcatgcctttaatcc
ccacttgggaggaagaggcaggtggatttctgagtttgaggccaacctgg
tctacaaagtgagttccaggacagccagggctacacagagaagccctgtc
tcaaaaaagaaaacaaacaaacaaaaaaaaaaccaaacaaacaaaaaagg
aaagtctaagtgtccactgattgtttttgaatctctaggtgttctgtttg
tgcttttacatcctggagtaaaggccagggtattgtgtaattatactgtg
tgacttcaatccattgcctgagtgtctctgggtgagaatttaccaccaca
gaaacaatctagaacttaattgtgaagccctttttgttgtaaaagaaaac
agtgactggtgtgtggtgtgggtgattgtgtgtatattgatgttgctgtt
tttgtatttttttttctttagtgtgattgttttctgctttttggttttga
catttttgtttttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10037957_10039136
seq2: B6Ng01-327L23.b_45_1217 (reverse)

seq1  AATATTACCCACATTAAAGAAATAAACTGTTAATATATTTGATA-GCATA  49
      |||||||||||   | ||||| | |   |||||| || |||||| |||||
seq2  AATATTACCCA---TGAAGAATTCA--CGTTAAT-TA-TTGATAGGCATA  43

seq1  GATGTCT-CAAAAGTCATGTGATA-ACTGGCAAAGGGCATGGT-AAGAAT  96
      || || | |||||||||||||| | ||| ||||| |||||||| ||||||
seq2  GA-GTATCCAAAAGTCATGTGAGATACT-GCAAA-GGCATGGTAAAGAAT  90

seq1  AAACACTT-CATTATTTAATAAATAAAAAATTTAAAAATATGT-GAATAT  144
      |||||||| ||||| || |||||||||||| |||||||||||| ||||||
seq2  AAACACTTCCATTA-TTGATAAATAAAAAAATTAAAAATATGTGGAATAT  139

seq1  TCCCCTGGGAACATATAAAGGAATCAAGAGAGACAGGA-TCCACTGATTA  193
      | ||||||| ||||||||||||||| |||||||||||| |||||||| ||
seq2  T-CCCTGGG-ACATATAAAGGAATC-AGAGAGACAGGATTCCACTGAATA  186

seq1  TGGATTACAGGAAACAATCTATGTATGGTTGGTGGATATGCTTATTGCCT  243
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGA-TACAGGAAACAATCTATGTATGGTTGGTGGATATGCTTATTGCCT  235

seq1  GGGAAGCACAGATGGATAGATAAAAGTATTAAAATGTATCAAATTATACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACAGATGGATAGATAAAAGTATTAAAATGTATCAAATTATACT  285

seq1  ATTCTTTGTTCAGTTTCCCTCAGTGAA-CCAGTTAGAACAGTTTGAAGGT  342
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTCTTTGTTCAGTTTCCCTCAGTGAACCCAGTTAGAACAGTTTGAAGGT  335

seq1  GTGGTGTACTTTACCAGAAGGAAAACTGGACTGCTATGCAAACATTGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTACTTTACCAGAAGGAAAACTGGACTGCTATGCAAACATTGGCA  385

seq1  GCTTTCTCTAAGCTACTTCTGAGAACATGTGCACAGATTAACAAGGGGTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTAAGCTACTTCTGAGAACATGTGCACAGATTAACAAGGGGTC  435

seq1  ACACAAGGTCTTGGGAACTTTGGAGAATACTAAGAAGGACTCCCCACTGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGTCTTGGGAACTTTGGAGAATACTAAGAAGGACTCCCCACTGA  485

seq1  TGAATCTGAATGACAAGACAATTACTGAGGATAGCTGACAACCACCTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGAATGACAAGACAATTACTGAGGATAGCTGACAACCACCTGGG  535

seq1  AAAGCAGGAAAGCATAGGTAGACCTTGCCAAAGAATGGATTCAGCAGGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGAAAGCATAGGTAGACCTTGCCAAAGAATGGATTCAGCAGGAT  585

seq1  GCTCGGTGGTCATGAACTGAGAACTGATTGACCTAGTCTTCCCTTCAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGTGGTCATGAACTGAGAACTGATTGACCTAGTCTTCCCTTCAGAA  635

seq1  GAAACCACTACATGCTAGACAATGTTTCATAAATTCACACTGAAAATTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACTACATGCTAGACAATGTTTCATAAATTCACACTGAAAATTGA  685

seq1  AATTAAGGAATGGACTGAAATGTTTATTTTGCCAGGCAAAGCACACACCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGGAATGGACTGAAATGTTTATTTTGCCAGGCAAAGCACACACCC  735

seq1  ACCCATACCAGAAAACCAAACAAATTTGAAAGTGTTTCCAGCATTTTGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATACCAGAAAACCAAACAAATTTGAAAGTGTTTCCAGCATTTTGCT  785

seq1  TTGTAAAGGTAGTGTCACATTTGGGTGCAGGGATGGGTGAGTCTTCATCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGGTAGTGTCACATTTGGGTGCAGGGATGGGTGAGTCTTCATCT  835

seq1  CTACAAAGGAATTGAGCTGTCAATTCTAAGTCCACTCTATCTGGGAGTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGGAATTGAGCTGTCAATTCTAAGTCCACTCTATCTGGGAGTTT  885

seq1  CCTGAGGGTCACATGGGAGTCATGTCCATTTCTCCCTCTTCCTTTACACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGTCACATGGGAGTCATGTCCATTTCTCCCTCTTCCTTTACACT  935

seq1  GTGCAAGTGAACCATCTTTCCTCTGTAAGTGCAAATTAATATGAGTTTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTGAACCATCTTTCCTCTGTAAGTGCAAATTAATATGAGTTTAA  985

seq1  GAAAGCCATATTATTCCAAACCCCTGGTAAGTTCACTATTCTAAAGCCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATATTATTCCAAACCCCTGGTAAGTTCACTATTCTAAAGCCTC  1035

seq1  AAAATTGTACCTTATTGACAAGTGGAGTCTTTTCGGGTGATCTAATTAAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTACCTTATTGACAAGTGGAGTCTTTTCGGGTGATCTAATTAAG  1085

seq1  ATGTCATTATTGGGATAGACCTTTATCCAGAGTAGAAAACCTGAAGGAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTATTGGGATAGACCTTTATCCAGAGTAGAAAACCTGAAGGAAT  1135

seq1  AACACCATTCAGAGACAAAGGCAAGGATTTGGGAATTC  1180
      ||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTCAGAGACAAAGGCAAGGATTTGGGAATTC  1173


seq1: chr12_9987086_9987894
seq2: B6Ng01-327L23.g_65_680

seq1  GAATTCTTAGAAGTGCAATATTTGGGCAGGCAAATGAAGATAGCCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAGTGCAATATTTGGGCAGGCAAATGAAGATAGCCTTCTC  50

seq1  TGTGATATTGGATAAATTATCCCACCAGTATCACATGGTTAGTCAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATTGGATAAATTATCCCACCAGTATCACATGGTTAGTCAAAGCA  100

seq1  TCAGTTTAATGAATGTCAAGCTGGGCAGTGGTGGTGCATGCCTTTAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAATGAATGTCAAGCTGGGCAGTGGTGGTGCATGCCTTTAATCC  150

seq1  CCACTTGGGAGGAAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGGAGGAAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAACCTGG  200

seq1  TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAGCCCTGTC  250

seq1  TCAAAAAAGAAAACAAACAAACAAAAAAAAAACCAAACAAACAAAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGAAAACAAACAAACAAAAAAAAAACCAAACAAACAAAAAAGG  300

seq1  AAAGTCTAAGTGTCCACTGATTGTTTTTGAATCTCTAGGTGTTCTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAAGTGTCCACTGATTGTTTTTGAATCTCTAGGTGTTCTGTTTG  350

seq1  TGCTTTTACATCCTGGAGTAAAGGCCAGGGTATTGTGTAATTATACTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTACATCCTGGAGTAAAGGCCAGGGTATTGTGTAATTATACTGTG  400

seq1  TGACTTCAATCCATTGCCTGAGTGTCTCTGGGTGAGAATTTACCACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAATCCATTGCCTGAGTGTCTCTGGGTGAGAATTTACCACCACA  450

seq1  GAAACAATCTAGAACTTAATTGTGAAGCCCTTTTTGTTGTAAAAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATCTAGAACTTAATTGTGAAGCCCTTTTTGTTGTAAAAGAAAAC  500

seq1  AGTGACTGGTGTGTGGTGTGGGTGATTGTGTGTATATTGATGTTGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGGTGTGTGGTGTGGGTGATTGTGTGTATATTGATGTTGCTGTT  550

seq1  TTTGTATTTTTTTTTCTTTAGTGTGACTGTTTACTGC-TTGTGGTTTTGA  599
      |||||||||||||||||||||||||| ||||| |||| || |||||||||
seq2  TTTGTATTTTTTTTTCTTTAGTGTGATTGTTTTCTGCTTTTTGGTTTTGA  600

seq1  CATTTTTGTCTTGTATCCTTACGAATTTAGGATTTCCTTAGGATCTCAAG  649
      ||||||||| || | ||                                 
seq2  CATTTTTGT-TTTTGTC---------------------------------  616

seq1  AAGCAATAGTTTGTATCACTGTTTTAACATTACTTTCAGATGTAGAAGGG  699
                                                        
seq2  --------------------------------------------------  616

seq1  AATGGACATTTATATGTAATTGAATAAAATGAAGTGATATTCAGAATATA  749
                                                        
seq2  --------------------------------------------------  616

seq1  ATATCTTATGGCTTTGAAATAATATAGACAACATGTTGGATAAGTTGTTT  799
                                                        
seq2  --------------------------------------------------  616

seq1  TGGTTTTGTC  809
                
seq2  ----------  616


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