BAC Information

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BAC

Clone NameB6Ng01-327M07
Chromosome12 (Build37)
Map Location 93,209,701 - 93,301,918
singlet/doubletdoublet
Overlap geneLOC100039387
Upstream gene4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589
Downstream geneLOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M07.bB6Ng01-327M07.g
ACCGA115217GA115218
length1,169854
definitionB6Ng01-327M07.b B6Ng01-327M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,209,701 - 93,210,850)(93,301,065 - 93,301,918)
sequence
gaattccaccccaccccccaccccccatgcaatgaaagaggaggcagaaa
aagtgtaagagagactggaggacatcaggggaacaatttcctctaaatta
actgaccaaagctcaaatcaactcatagagagtgaagcagcaaacagaac
ctgcatgagactccaccaggtcgtctgtatatatattatatgtgtatata
tattatatctttcagtttagaaatttcatgagacttttgaatgtgtgaag
gagtgggtctctgattcttgtaccttctcttggactctcttccttctatt
ggggtgccttgtccaattttgatgtgattttttttttaaaaaaattatct
catgatattttattttgttatgttttctcagaagcctttcttttctaatg
agagcataggtcatgatggccactggtagtggttgatagggaacaaagca
agttaagatgccactgtcaagtttcattttattttacaatctgcctggaa
ttctcctactgtgctctaggggtaagaaggccagggctagcttccatgtt
ccctggtctttgtggaagtagtgttaatcaggataataatgtgatcatgc
ctgccatgctagatattcatttatttttagaaaatattggagatagaaaa
ctctatctatctatctatctatctatctatctatctatctatctatctat
ctatctatctatctacaaatataaatatagaaatatacaaatatttctat
gagtactcataataattctatgaagcctgttatttttgtataagaaagtg
gagtatttatatattcttttagacaaacacaaagtatgcttatctgtaaa
caatgatataatttagaattataacacacagtgaaagcacacacaaataa
tgaaacacattttttcagtgttttcaattcctggcatgttaccctctgag
atttaagggaaactaatcagtattcccagattattcccagtgtcttccaa
aattatgatatttaaatatacctcttaaagactcttccaccatggttaat
tttgcattgctaaaattttatattaaagaatataaaattacacctaagct
ttctatagtacttacaggaacctgtattcttataaggaacatttccaaaa
aaacatactttggaatttc
gaattcttcctgaacatgtgggaaagtcgaggtcaaggcaaaaccaatga
gccattgcagtcttcactagtgaaatttcaacaagtagattaaaattaat
cagactaattgggccttttctgggagcaatggagaaaaatgaacatgtgt
agagactgaaaaagttaaaactactgctgaattttgtctaacctatgagt
tttaaaaagcaaaaggaaggtgattcccctcaagggctattcaacgcatt
taaatgtgagctcaccaaagcatggactaatgttttaacagctggagtgg
ttaagcatccttctgttttaatagttttaatagcctatgacaagagggca
aggttagacacccaaagagctcagcatcctcaagggcaacacctgaagtg
agtgagaatctgttctgatggaatgcagcagcagtttctgtagagcaagg
ctgtttaatagactgctctctgcatttaaattatagtagacttgcccttc
acttaaacttgaccagcagcccccacacagctctaagggatgatgctgca
gtgctgcgatacaggaaggaaaacagaccactgtcaccatgcacatacct
ccctcttagtgtatggaagcacagggatgctgcactcagacaggcaccat
ataaagcacactagactcttggccataaagtgtgacacagcttagggatc
atcacgtccattgagttaaaatagaaagcgatctggaaaacgaaagagtt
gcattcagttcctgtttcctgatctctttcccatgtaaactctgaggtct
tcaatgctcacttacctacagacttccaggtctcagtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93209701_93210850
seq2: B6Ng01-327M07.b_45_1213

seq1  GAATTCCACCCCACCCCCCACCCCCCATGCAATGAAAGAGGAGGCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCACCCCCCACCCCCCATGCAATGAAAGAGGAGGCAGAAA  50

seq1  AAGTGTAAGAGAGACTGGAGGACATCAGGGGAACAATTTCCTCTAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAAGAGAGACTGGAGGACATCAGGGGAACAATTTCCTCTAAATTA  100

seq1  ACTGACCAAAGCTCAAATCAACTCATAGAGAGTGAAGCAGCAAACAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAAAGCTCAAATCAACTCATAGAGAGTGAAGCAGCAAACAGAAC  150

seq1  CTGCATGAGACTCCACCAGGTCGTCTGTATATATATTATATGTGTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAGACTCCACCAGGTCGTCTGTATATATATTATATGTGTATATA  200

seq1  TATTATATCTTTCAGTTTAGAAATTTCATGAGACTTTTGAATGTGTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATCTTTCAGTTTAGAAATTTCATGAGACTTTTGAATGTGTGAAG  250

seq1  GAGTGGGTCTCTGATTCTTGTACCTTCTCTTGGACTCTCTTCCTTCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTCTCTGATTCTTGTACCTTCTCTTGGACTCTCTTCCTTCTATT  300

seq1  GGGGTGCCTTGTCCAATTTTGATGTGATTTTTTTTTTAAAAAAATTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCCTTGTCCAATTTTGATGTGATTTTTTTTTTAAAAAAATTATCT  350

seq1  CATGATATTTTATTTTGTTATGTTTTCTCAGAAGCCTTTCTTTTCTAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATTTTATTTTGTTATGTTTTCTCAGAAGCCTTTCTTTTCTAATG  400

seq1  AGAGCATAGGTCATGATGGCCACTGGTAGTGGTTGATAGGGAACAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGGTCATGATGGCCACTGGTAGTGGTTGATAGGGAACAAAGCA  450

seq1  AGTTAAGATGCCACTGTCAAGTTTCATTTTATTTTACAATCTGCCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGATGCCACTGTCAAGTTTCATTTTATTTTACAATCTGCCTGGAA  500

seq1  TTCTCCTACTGTGCTCTAGGGGTAAGAAGGCCAGGGCTAGCTTCCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTACTGTGCTCTAGGGGTAAGAAGGCCAGGGCTAGCTTCCATGTT  550

seq1  CCCTGGTCTTTGTGGAAGTAGTGTTAATCAGGATAATAATGTGATCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCTTTGTGGAAGTAGTGTTAATCAGGATAATAATGTGATCATGC  600

seq1  CTGCCATGCTAGATATTCATTTATTTTTAGAAAATATTGGAGATAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGCTAGATATTCATTTATTTTTAGAAAATATTGGAGATAGAAAA  650

seq1  CTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  700

seq1  CTATCTATCTATCTACAAATATAAATATAGAAATATACAAATATTTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTACAAATATAAATATAGAAATATACAAATATTTCTAT  750

seq1  GAGTACTCATAATAATTCTATGAAGCCTGTTATTTTTGTATAAGAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTCATAATAATTCTATGAAGCCTGTTATTTTTGTATAAGAAAGTG  800

seq1  GAGTATTTATATATTCTTTTAGACAAACACAAAGTATGCTTATCTGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTATATATTCTTTTAGACAAACACAAAGTATGCTTATCTGTAAA  850

seq1  CAATGATATAATTTAGAATTATAACACACAGTGAAAGCACACACAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATATAATTTAGAATTATAACACACAGTGAAAGCACACACAAATAA  900

seq1  TGAAACACA-TTTTTCAGTGTTTTCAATTCCTGGCATGTTACCCTCTGAG  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACATTTTTTCAGTGTTTTCAATTCCTGGCATGTTACCCTCTGAG  950

seq1  ATTT-AGGGAAACTAAATCAGTATTCCCAGA-TATTCCCAGTGTC-TCCA  996
      |||| ||||||||| |||||||||||||||| ||||||||||||| ||||
seq2  ATTTAAGGGAAACT-AATCAGTATTCCCAGATTATTCCCAGTGTCTTCCA  999

seq1  AAATTATGATATTTAAATATACCTCT--AAGACTCTTC--ACATGGT--A  1040
      ||||||||||||||||||||||||||  ||||||||||   ||||||  |
seq2  AAATTATGATATTTAAATATACCTCTTAAAGACTCTTCCACCATGGTTAA  1049

seq1  ATTTGCATTGCTAAAATTTTTATTTAAAGAAT---AAAATACA-CTAAGC  1086
       |||||||||||||||||||   |||||||||   ||| |||| ||||||
seq2  TTTTGCATTGCTAAAATTTTATATTAAAGAATATAAAATTACACCTAAGC  1099

seq1  TT--CATAGTACTTACAAGGAACTGTA-TCTTAT-AGGAACA-TTCCAGA  1131
      ||   |||||||||||| | | ||||| |||||| ||||||| ||||| |
seq2  TTTCTATAGTACTTACAGGAACCTGTATTCTTATAAGGAACATTTCCAAA  1149

seq1  AAAACATAATTT-GAATTTC  1150
      |||||||| ||| |||||||
seq2  AAAACATACTTTGGAATTTC  1169

seq1: chr12_93301065_93301918
seq2: B6Ng01-327M07.g_68_921 (reverse)

seq1  CACACACACACACACACACTGAGACCTGGAAGTCTGTAGGTAAGTGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTGAGACCTGGAAGTCTGTAGGTAAGTGAGCA  50

seq1  TTGAAGACCTCAGAGTTTACATGGGAAAGAGATCAGGAAACAGGAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCTCAGAGTTTACATGGGAAAGAGATCAGGAAACAGGAACTGA  100

seq1  ATGCAACTCTTTCGTTTTCCAGATCGCTTTCTATTTTAACTCAATGGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACTCTTTCGTTTTCCAGATCGCTTTCTATTTTAACTCAATGGACG  150

seq1  TGATGATCCCTAAGCTGTGTCACACTTTATGGCCAAGAGTCTAGTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATCCCTAAGCTGTGTCACACTTTATGGCCAAGAGTCTAGTGTGCT  200

seq1  TTATATGGTGCCTGTCTGAGTGCAGCATCCCTGTGCTTCCATACACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGTGCCTGTCTGAGTGCAGCATCCCTGTGCTTCCATACACTAAG  250

seq1  AGGGAGGTATGTGCATGGTGACAGTGGTCTGTTTTCCTTCCTGTATCGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTATGTGCATGGTGACAGTGGTCTGTTTTCCTTCCTGTATCGCA  300

seq1  GCACTGCAGCATCATCCCTTAGAGCTGTGTGGGGGCTGCTGGTCAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCAGCATCATCCCTTAGAGCTGTGTGGGGGCTGCTGGTCAAGTTT  350

seq1  AAGTGAAGGGCAAGTCTACTATAATTTAAATGCAGAGAGCAGTCTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGGGCAAGTCTACTATAATTTAAATGCAGAGAGCAGTCTATTAA  400

seq1  ACAGCCTTGCTCTACAGAAACTGCTGCTGCATTCCATCAGAACAGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTGCTCTACAGAAACTGCTGCTGCATTCCATCAGAACAGATTCT  450

seq1  CACTCACTTCAGGTGTTGCCCTTGAGGATGCTGAGCTCTTTGGGTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTTCAGGTGTTGCCCTTGAGGATGCTGAGCTCTTTGGGTGTCTA  500

seq1  ACCTTGCCCTCTTGTCATAGGCTATTAAAACTATTAAAACAGAAGGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCCTCTTGTCATAGGCTATTAAAACTATTAAAACAGAAGGATGC  550

seq1  TTAACCACTCCAGCTGTTAAAACATTAGTCCATGCTTTGGTGAGCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACTCCAGCTGTTAAAACATTAGTCCATGCTTTGGTGAGCTCACA  600

seq1  TTTAAATGCGTTGAATAGCCCTTGAGGGGAATCACCTTCCTTTTGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCGTTGAATAGCCCTTGAGGGGAATCACCTTCCTTTTGCTTTT  650

seq1  TAAAACTCATAGGTTAGACAAAATTCAGCAGTAGTTTTAACTTTTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCATAGGTTAGACAAAATTCAGCAGTAGTTTTAACTTTTTCAGT  700

seq1  CTCTACACATGTTCATTTTTCTCCATTGCTCCCAGAAAAGGCCCAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACATGTTCATTTTTCTCCATTGCTCCCAGAAAAGGCCCAATTAG  750

seq1  TCTGATTAATTTTAATCTACTTGTTGAAATTTCACTAGTGAAGACTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAATTTTAATCTACTTGTTGAAATTTCACTAGTGAAGACTGCAA  800

seq1  TGGCTCATTGGTTTTGCCTTGACCTCGACTTTCCCACATGTTCAGGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTGGTTTTGCCTTGACCTCGACTTTCCCACATGTTCAGGAAGA  850

seq1  ATTC  854
      ||||
seq2  ATTC  854