BAC Information

Click to search

BAC

Clone NameB6Ng01-328E04
Chromosome12 (Build37)11 (Build37)
Map Location 77,475,622 - 77,477,101113,634,010 - 113,634,566
singlet/doubletsingletsinglet
Overlap geneZbtb1
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25
Downstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328E04.bB6Ng01-328E04.g
ACCGA115575GA115576
length1,014128
definitionB6Ng01-328E04.b B6Ng01-328E04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,475,622 - 77,477,101)(113,634,010 - 113,634,566)
sequence
gaattccacccacatttggcagcttacatatttaaggtagatttctaagt
atactgatgttttgtcctgtatagtcatcacaaagctacttagcctggtg
tagtcaaggtggatgagctgtgaagtcgattccctgataaagctgccagc
tagcaggaacagatttaatcacagtagttacttgaaggtgttgaggacat
gctgctatgttgagatgggggtctctttgtatagcattgcctgtcctgga
actcacagagatccatctgtctctgtctcccaagtgctgggatcaaaggc
atgtatcaccaactgctgggggttttttttgggcgggggtgatgtgctct
ttgagaacactactatgtgaatataacttgttctcaatcatatttgaagg
cttggaggtatatgacttagtaggagagtgcttgcctgtcatgcctgagg
ccctatgctcagcctctggcacggtaaactataatgatgggtattaaaga
atagggctggagagatggctcagtggttaagagcactggctgcttgctct
tccagaggtcctgagttcaattcccagcaacgacatggtggctcacaacc
atctgttgtggggtctggtgcccttttctggtgtgtctcaagagagtaat
ggtggtgtactcacgcataaaatgaataaatcttttttaaaaatttaaag
aatagcagtgtgtggggtacatgattttaatcccagcacttagaaggtaa
aagcaagtggatttctgtgggttcgaggccaccttagtatacacagttcc
agccagctccacagtgagaccctgtcaccaaaaaaataaaaataaaaagt
aaatattaaataataaattgctaattatattttctgttagtttcctgtgt
gaggtgcatgttgcccttttaagagctagctgaagagctcctccatactt
gaaattgccagccgtggggtgggcatggcggtcagcagatgggaaaggag
atggggaaaggggt
caggacagccagggctaaacagagaaaccctgtctcaaaaaacaaacgaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaag
gaaggaggaaagaaagagagaaagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77475622_77477101
seq2: B6Ng01-328E04.b_45_1058

seq1  GAATTCCACCCACATTTGGCAGCTTACATATTTAAGGTAGATTTCTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCACATTTGGCAGCTTACATATTTAAGGTAGATTTCTAAGT  50

seq1  ATACTGATGTTTTGTCCTGTATAGTCATCACAAAGCTACTTAGCCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATGTTTTGTCCTGTATAGTCATCACAAAGCTACTTAGCCTGGTG  100

seq1  TAGTCAAGGTGGATGAGCTGTGAAGTCGATTCCCTGATAAAGCTGCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGGTGGATGAGCTGTGAAGTCGATTCCCTGATAAAGCTGCCAGC  150

seq1  TAGCAGGAACAGATTTAATCACAGTAGTTACTTGAAGGTGTTGAGGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAACAGATTTAATCACAGTAGTTACTTGAAGGTGTTGAGGACAT  200

seq1  GCTGCTATGTTGAGATGGGGGTCTCTTTGTATAGCATTGCCTGTCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATGTTGAGATGGGGGTCTCTTTGTATAGCATTGCCTGTCCTGGA  250

seq1  ACTCACAGAGATCCATCTGTCTCTGTCTCCCAAGTGCTGGGATCAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAGAGATCCATCTGTCTCTGTCTCCCAAGTGCTGGGATCAAAGGC  300

seq1  ATGTATCACCAACTGCTGGGGGTTTTTTTTGGGCGGGGGTGATGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCACCAACTGCTGGGGGTTTTTTTTGGGCGGGGGTGATGTGCTCT  350

seq1  TTGAGAACACTACTATGTGAATATAACTTGTTCTCAATCATATTTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACACTACTATGTGAATATAACTTGTTCTCAATCATATTTGAAGG  400

seq1  CTTGGAGGTATATGACTTAGTAGGAGAGTGCTTGCCTGTCATGCCTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGTATATGACTTAGTAGGAGAGTGCTTGCCTGTCATGCCTGAGG  450

seq1  CCCTATGCTCAGCCTCTGGCACGGTAAACTATAATGATGGGTATTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGCTCAGCCTCTGGCACGGTAAACTATAATGATGGGTATTAAAGA  500

seq1  ATAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGGCTGCTTGCTCT  550

seq1  TCCAGAGGTCCTGAGTTCAATTCCCAGCAACGACATGGTGGCTCACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCTGAGTTCAATTCCCAGCAACGACATGGTGGCTCACAACC  600

seq1  ATCTGTTGTGGGGTCTGGTGCCCTTTTCTGGTGTGTCTCAAGAGAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGTGGGGTCTGGTGCCCTTTTCTGGTGTGTCTCAAGAGAGTAAT  650

seq1  GGTGGTGTACTCACGCATAAAATGAATAAATCTTTTTTAAAAATTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGTACTCACGCATAAAATGAATAAATCTTTTTTAAAAATTTAAAG  700

seq1  AATAGCAGTGTGTGGGGTACATGATTTTAATCCCAGCACTTAGAAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGTGTGTGGGGTACATGATTTTAATCCCAGCACTTAGAAGGTAA  750

seq1  AAGCAAGTGGATTTCTGTGGGTTCGAGGCCACCTTAGTATACACAGTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTGGATTTCTGTGGGTTCGAGGCCACCTTAGTATACACAGTTCC  800

seq1  AGCCAGCTCCACAGTGAGACCCTGTCACCAAAAAAATAAAAATAAAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTCCACAGTGAGACCCTGTCACCAAAAAAATAAAAATAAAAAGT  850

seq1  AAATATTAAATAATAAATTGCTAATTATATTTTCTGTTAGTTTCCTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAATAATAAATTGCTAATTATATTTTCTGTTAGTTTCCTGTGT  900

seq1  GAGGTGCATGTTGCCCTTTTAAGAGCTAGCTGAAGAGCTCCTCCATACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCATGTTGCCCTTTTAAGAGCTAGCTGAAGAGCTCCTCCATACTT  950

seq1  GAAATTGCCAGCCGTGGGGTGGGCATGGCGGTCAGCAGATGGGAAAGGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCCAGCCGTGGGGTGGGCATGGCGGTCAGCAGATGGGAAAGGAG  1000

seq1  ATGGGG-AAGGGGTGTGTTCTGTGAGCCTGCAAGATAAGACAGCAAGAAT  1049
      |||||| |||||||                                    
seq2  ATGGGGAAAGGGGT------------------------------------  1014

seq1  GCTGAGAGCTTATACTGTGATGGAAAGAGTGACTGTGGGAGGCTTAGAAT  1099
                                                        
seq2  --------------------------------------------------  1014

seq1  GTTCCAGAGGGCGCCTTACTGAATAATCATACCCAGAAAGTGGAGTCTGA  1149
                                                        
seq2  --------------------------------------------------  1014

seq1  GTTACAGAAACTGAAACTCTGCATTTTGAATCAAGAGTTAGGGTTTCAGT  1199
                                                        
seq2  --------------------------------------------------  1014

seq1  CCCAGCTTCTGTTTACAAGATGGGTAGTTAACTACTGCACATGTTTTCTT  1249
                                                        
seq2  --------------------------------------------------  1014

seq1  CATTCACAAAATATAGATAATTAAAAGCCTATCTCAGGGTGTTCGTTGTA  1299
                                                        
seq2  --------------------------------------------------  1014

seq1  AGAATCTGTTCACTAATGTCTGAAAGAGACCCTATAAGCTGACAACTATA  1349
                                                        
seq2  --------------------------------------------------  1014

seq1  TAAAAGTTTCAGTGACAGCCATAAAGCAAAAACTGGTGAGCCAAATCTAA  1399
                                                        
seq2  --------------------------------------------------  1014

seq1  CTTGCTCAGTTTAACATTTATTCCTTGGAAAAACTCATTAAATATCAATT  1449
                                                        
seq2  --------------------------------------------------  1014

seq1  AAATGTCAAGCAACTACTAGAAGTTAGGGGT  1480
                                     
seq2  -------------------------------  1014

seq1: chr11_113634010_113634566
seq2: B6Ng01-328E04.g_72_199

seq1  CAGGACAGCCAAGGATATACAGAGAAACCCTGTCTCGAAAAACCAAAAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAACCAAAAAGAAAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAAGAAAGAAATAGGGACTCAACCTTTTCACCAGAGCCATCAACTTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTAATTCCCCAAAATGACACTGAGGGAGGGGAGAAAGGCACCCACTAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTTCTCTGGGCATTTTAGAAAATGGGGGTGGGGGGGGGGGAGGTGGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAATGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCATTGATTGCTCTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGAGGTCCTGAGTTCAAATCCCAGCAACCTCATGGTGGCTCACAACCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACA  400
                                                ||| ||||
seq2  ------------------------------------------CAG-GACA  7

seq1  GTGTACTCACATACATAAAATAAATAAATAATTAAAAAGAAAGAAAGAAA  450
      |        ||    |||               | | |||||    |   
seq2  G-------CCAGGGCTAA---------------ACAGAGAAACCCTGTCT  35

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  500
       ||| ||  || ||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAACGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  85

seq1  AAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGA  550
      ||||||||||||||||||||| | ||| |||              |||||
seq2  AAGAAAGGAAGGAAGGAAGGAGGAAAGAAAG--------------AGAGA  121

seq1  GAGAAAG  557
       ||||||
seq2  AAGAAAG  128