BAC Information

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BAC

Clone NameB6Ng01-329D01
Chromosome12 (Build37)
Map Location 88,629,185 - 88,723,181
singlet/doubletdoublet
Overlap geneThsd3, Sptlc2
Upstream gene1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1
Downstream geneLOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329D01.bB6Ng01-329D01.g
ACCGA116233GA116234
length468487
definitionB6Ng01-329D01.b B6Ng01-329D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,629,185 - 88,629,658)(88,722,689 - 88,723,181)
sequence
aaatctgtggtctatgggggccattcgtattcaaagtgcccaagccagaa
ctatcttttgtcagctgagatagtgaggggaagaagcccctggctattcc
tagcgctcctcagcttttaccccagatgatccatcggcattggcctctat
gcctaatacctatttctgttccccagtacccatggcaaggcaggggagct
ctttccagggacaccttggtgggtcctccccaggccccagccttgcccct
tcaaacctagtctcttgtgcagcatggagcaacttcttccgaaaagtcag
gtaagaatggctccaaaggccagttccactttctacctaggccttcaatg
aagtgagtgccctgccaaacgagaatgaaaagtcttacataaacggaaag
ttataattttcttactagacaccatagcatgtactgtgtagcaggcacta
gggtgtgtgtgtgtgtgt
agggggtctacatctccctactgaactattggctattgatggattctggg
ggaggggcagttgttgccttcagttgagtacaaaacacagaggctaaacc
tctgaccacacacactatcctggttaaaatcagagcgtaacaaaacaaca
aaagacttaaatgtgaggtaaggacctgtaaggggaagaggtggaagata
ggtgagagggaagtaagagaaggtggaaaatgagaggaaatagaatgaat
gtactgtatacatgtataatgttgtcaaataaacttagttgattaaaaag
gtttaaaaaaatgagagaagatcctttctaggtaaatagtatcctcattt
tgcaaataagaatactaaagtccgtacctctaagttactgagttggaagt
gttttggtggtattcagtttgtctgactctaccagacgattgaaagaagg
atgagtggtatttgaagcaatggagttggtaaagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88629185_88629658
seq2: B6Ng01-329D01.b_45_518

seq1  GAATTCAAATCTGTGGTCTATGGGGGCCATTCGTATTCAAAGTGCCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTGTGGTCTATGGGGGCCATTCGTATTCAAAGTGCCCAAG  50

seq1  CCAGAACTATCTTTTGTCAGCTGAGATAGTGAGGGGAAGAAGCCCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTATCTTTTGTCAGCTGAGATAGTGAGGGGAAGAAGCCCCTGGC  100

seq1  TATTCCTAGCGCTCCTCAGCTTTTACCCCAGATGATCCATCGGCATTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGCGCTCCTCAGCTTTTACCCCAGATGATCCATCGGCATTGGC  150

seq1  CTCTATGCCTAATACCTATTTCTGTTCCCCAGTACCCATGGCAAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCCTAATACCTATTTCTGTTCCCCAGTACCCATGGCAAGGCAGG  200

seq1  GGAGCTCTTTCCAGGGACACCTTGGTGGGTCCTCCCCAGGCCCCAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTTTCCAGGGACACCTTGGTGGGTCCTCCCCAGGCCCCAGCCTT  250

seq1  GCCCCTTCAAACCTAGTCTCTTGTGCAGCATGGAGCAACTTCTTCCGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCAAACCTAGTCTCTTGTGCAGCATGGAGCAACTTCTTCCGAAA  300

seq1  AGTCAGGTAAGAATGGCTCCAAAGGCCAGTTCCACTTTCTACCTAGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTAAGAATGGCTCCAAAGGCCAGTTCCACTTTCTACCTAGGCCT  350

seq1  TCAATGAAGTGAGTGCCCTGCCAAACGAGAATGAAAAGTCTTACATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAGTGAGTGCCCTGCCAAACGAGAATGAAAAGTCTTACATAAAC  400

seq1  GGAAAGTTATAATTTTCTTACTAGACACCATAGCATGTACTGTGTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTATAATTTTCTTACTAGACACCATAGCATGTACTGTGTAGCAG  450

seq1  GCACTAGGGTGTGTGTGTGTGTGT  474
      ||||||||||||||||||||||||
seq2  GCACTAGGGTGTGTGTGTGTGTGT  474

seq1: chr12_88722689_88723181
seq2: B6Ng01-329D01.g_63_555 (reverse)

seq1  ATACTTTACCAACTCCATTGCTTCAACTACCACTCATCCCTCTTTCAATC  50
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ATACTTTACCAACTCCATTGCTTCAAATACCACTCATCCTTCTTTCAATC  50

seq1  GTCTGGTAGAGTCAGACAAACTGAATACCACCAAAACACTTCCAACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTAGAGTCAGACAAACTGAATACCACCAAAACACTTCCAACTCAG  100

seq1  TAACTTAGAGGTACGGACTTTAGTATTCTTATTTGCAAAATGAGGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGAGGTACGGACTTTAGTATTCTTATTTGCAAAATGAGGATACT  150

seq1  ATTTACCTAGAAAGGATCTTCTCTCATTTTTTTAAACCTTTTTAATCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTAGAAAGGATCTTCTCTCATTTTTTTAAACCTTTTTAATCAAC  200

seq1  TAAGTTTATTTGACAACATTATACATGTATACAGTACATTCATTCTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATTTGACAACATTATACATGTATACAGTACATTCATTCTATTT  250

seq1  CCTCTCATTTTCCACCTTCTCTTACTTCCCTCTCACCTATCTTCCACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATTTTCCACCTTCTCTTACTTCCCTCTCACCTATCTTCCACCTC  300

seq1  TTCCCCTTACAGGTCCTTACCTCACATTTAAGTCTTTTGTTGTTTTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTACAGGTCCTTACCTCACATTTAAGTCTTTTGTTGTTTTGTTA  350

seq1  CGCTCTGATTTTAACCAGGATAGTGTGTGTGGTCAGAGGTTTAGCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGATTTTAACCAGGATAGTGTGTGTGGTCAGAGGTTTAGCCTCTG  400

seq1  TGTTTTGTACTCAACTGAAGGCAACAACTGCCCCTCCCCCAGAATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTACTCAACTGAAGGCAACAACTGCCCCTCCCCCAGAATCCATC  450

seq1  AATAGCCAATAGTTCAGTAGGGAGATGTAGACCCCCTGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAATAGTTCAGTAGGGAGATGTAGACCCCCTGAATTC  493