BAC Information

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BAC

Clone NameB6Ng01-329G11
Chromosome12 (Build37)
Map Location 26,668,763 - 26,814,547
singlet/doubletdoublet
Overlap genenone
Upstream geneC330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G11.bB6Ng01-329G11.g
ACCGA116377GA116378
length1,140858
definitionB6Ng01-329G11.b B6Ng01-329G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,813,396 - 26,814,547)(26,668,763 - 26,669,602)
sequence
gaattccaggactttgtcaaacaggcatgtcttaaccatggcagggagtt
aggacgtctgtctgttaagctgtgaaattaaaacaccccaggctgggagc
ctaaacaatggatatttactttctcttcgttctggatcctagatatccaa
ggtcaagccactgactgctttgatttctgaggaagccttcctctttggct
tgtatgtggccaggtcctggtttcctctccattccttagcctggcctctt
tggctcccacagtgtcctatctactgttcttatgatgataacattcttat
tctatcagaacccacccactgaaacccagttacatccctaaaggccttgt
ctccaaatttagttgcatcttaacattctgagatacggctccaatgtata
gatttttttttttaatgtgggaaggacagttcaatccaaaatagatagtt
gagaaaacataattctaaattagacaacctatggcctcaagttgttcaga
tctactttagcaataaatcctgtaacttgtttatccattagccatgtgtc
tggcatcctgttcatatttgtggagggactcagtaattcctgtgcactct
cttccctcagttatgaaacagatcagagctgctagttgacatgattcatg
gacaaatgaaaggagaacaagctgcaatgggaagtgcctgtgtggcaaga
caccagcacaggatatgattgtgagctcaaagctgatggttttctttgtg
actttttcccattatttctttacaggttttctgggcagaagcatttgggc
tgtagttaggctcctgtctttcaactgcctccaggaaaggtgtagcatca
aggagcagaggaacggaaatcctttcttctggtattatgatatcaaatac
gaggttttcagtgaaaaagattcagtacagaatctgggcaataacgtgtt
aaaacaaggagccccctttactctcccctctcacaggacaccaggatcca
ttatgaggaggagaaggagattagaaagagaagatgcgtctcagatagtg
acagctccattttggatttcatagaatgagatcagaactggaccttgtta
acatattactgcccatgttctccagaatctgtaggatctg

gaattccataagcacacctatagaaacatagacacagacacacagataca
cacacacacacacacacacacacacacacacccctacactaaggaccatg
tatatgcagaaataaatattgttaagggtcatattacattcagtggacat
aataatattagctactaataacaactactatttcacctgaatgcatccca
ggtaccaagcttttttaaaatcaaccctatgtgtgaatgttgtggataat
cacagcagccatgttttttctgtgaaaaaaaaaatgaaacaaacaaaaaa
aatattacttccaagtgaaatgtgttgagtgcaaaattagttctgtctgg
attctaaatccactcttgttttgttattacacattctcgtggtctttgat
tcatccctatcacgagttcttaaaaaaagaaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaaagaaagaa
aggaaagagggaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagagagaaag
agagagagagagaagtcaaagtgaaagtccaggctggtagtttcctccag
agtcagaggtgcccatcaaccacactgaagaagcatattccagtgttatc
aggtatgagacctggtggagggaatgagggaggaatgtgatgttttctat
gggaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26813396_26814547
seq2: B6Ng01-329G11.b_46_1185 (reverse)

seq1  CAGATCCCTCCAGAATTCTGGAGAACATTGGGCAGT-ATATGTT-ACAA-  47
      ||||| ||| ||| ||||||||||||| |||||||| ||||||| |||| 
seq2  CAGAT-CCTACAG-ATTCTGGAGAACA-TGGGCAGTAATATGTTAACAAG  47

seq1  GTCTGGTCCTGATTCTTCATCTATGAAATCCAAAATGGAGCTGTCACTAT  97
      |||  || |||| |||   |||||||||||||||||||||||||||||||
seq2  GTCCAGTTCTGA-TCTCATTCTATGAAATCCAAAATGGAGCTGTCACTAT  96

seq1  CCTGAGACGCCATCTTCTCTTTTCCTAATTCTTCCTTCTCCTCCTTCATA  147
       |||||||| ||||||||||||  |||||   |||||||||||| |||||
seq2  -CTGAGACG-CATCTTCTCTTT--CTAAT--CTCCTTCTCCTCC-TCATA  139

seq1  ATGGATCCTGGGTGTCCTGTGAGAGGGGAGAGTAAAGGGGGCCTCCTTGT  197
      ||||||||| ||||||||||||||||||||||||||||||| ||||||| 
seq2  ATGGATCCT-GGTGTCCTGTGAGAGGGGAGAGTAAAGGGGG-CTCCTTG-  186

seq1  TTTTAACACGTTATTGCCCAGATTTCTGTACTGAATCTTTTTCACTGAAA  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTAACACGTTATTGCCCAGA-TTCTGTACTGAATCTTTTTCACTGAAA  235

seq1  ACCTCGTATTTGATATCATAATACCAGAAGAAAGGATTTCCGTTCCTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGTATTTGATATCATAATACCAGAAGAAAGGATTTCCGTTCCTCTG  285

seq1  CTCCTTGATGCTACACCTTTCCTGGAGGCAGTTGAAAGACAGGAGCCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGATGCTACACCTTTCCTGGAGGCAGTTGAAAGACAGGAGCCTAA  335

seq1  CTACAGCCCAAATGCTTCTGCCCAGAAAACCTGTAAAGAAATAATGGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCCAAATGCTTCTGCCCAGAAAACCTGTAAAGAAATAATGGGAA  385

seq1  AAAGTCACAAAGAAAACCATCAGCTTTGAGCTCACAATCATATCCTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAAAGAAAACCATCAGCTTTGAGCTCACAATCATATCCTGTGC  435

seq1  TGGTGTCTTGCCACACAGGCACTTCCCATTGCAGCTTGTTCTCCTTTCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTTGCCACACAGGCACTTCCCATTGCAGCTTGTTCTCCTTTCAT  485

seq1  TTGTCCATGAATCATGTCAACTAGCAGCTCTGATCTGTTTCATAACTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATGAATCATGTCAACTAGCAGCTCTGATCTGTTTCATAACTGAG  535

seq1  GGAAGAGAGTGCACAGGAATTACTGAGTCCCTCCACAAATATGAACAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGTGCACAGGAATTACTGAGTCCCTCCACAAATATGAACAGGA  585

seq1  TGCCAGACACATGGCTAATGGATAAACAAGTTACAGGATTTATTGCTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACACATGGCTAATGGATAAACAAGTTACAGGATTTATTGCTAAA  635

seq1  GTAGATCTGAACAACTTGAGGCCATAGGTTGTCTAATTTAGAATTATGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTGAACAACTTGAGGCCATAGGTTGTCTAATTTAGAATTATGTT  685

seq1  TTCTCAACTATCTATTTTGGATTGAACTGTCCTTCCCACATTAAAAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTATCTATTTTGGATTGAACTGTCCTTCCCACATTAAAAAAAA  735

seq1  AAATCTATACATTGGAGCCGTATCTCAGAATGTTAAGATGCAACTAAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATACATTGGAGCCGTATCTCAGAATGTTAAGATGCAACTAAATT  785

seq1  TGGAGACAAGGCCTTTAGGGATGTAACTGGGTTTCAGTGGGTGGGTTCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAGGCCTTTAGGGATGTAACTGGGTTTCAGTGGGTGGGTTCTG  835

seq1  ATAGAATAAGAATGTTATCATCATAAGAACAGTAGATAGGACACTGTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAAGAATGTTATCATCATAAGAACAGTAGATAGGACACTGTGGG  885

seq1  AGCCAAAGAGGCCAGGCTAAGGAATGGAGAGGAAACCAGGACCTGGCCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGAGGCCAGGCTAAGGAATGGAGAGGAAACCAGGACCTGGCCAC  935

seq1  ATACAAGCCAAAGAGGAAGGCTTCCTCAGAAATCAAAGCAGTCAGTGGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCCAAAGAGGAAGGCTTCCTCAGAAATCAAAGCAGTCAGTGGCT  985

seq1  TGACCTTGGATATCTAGGATCCAGAACGAAGAGAAAGTAAATATCCATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGGATATCTAGGATCCAGAACGAAGAGAAAGTAAATATCCATTG  1035

seq1  TTTAGGCTCCCAGCCTGGGGTGTTTTAATTTCACAGCTTAACAGACAGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTCCCAGCCTGGGGTGTTTTAATTTCACAGCTTAACAGACAGAC  1085

seq1  GTCCTAACTCCCTGCCATGGTTAAGACATGCCTGTTTGACAAAGTCCTGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAACTCCCTGCCATGGTTAAGACATGCCTGTTTGACAAAGTCCTGG  1135

seq1  AATTC  1152
      |||||
seq2  AATTC  1140


seq1: chr12_26668763_26669602
seq2: B6Ng01-329G11.g_68_925

seq1  GAATTCCATAAGCACACCTATAGAAACATAGACACAGACACACAGATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGCACACCTATAGAAACATAGACACAGACACACAGATACA  50

seq1  CACACACACACACACACACACACACACACACCCCTACACTAAGGACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCCCTACACTAAGGACCATG  100

seq1  TATATGCAGAAATAAATATTGTTAAGGGTCATATTACATTCAGTGGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGAAATAAATATTGTTAAGGGTCATATTACATTCAGTGGACAT  150

seq1  AATAATATTAGCTACTAATAACAACTACTATTTCACCTGAATGCATCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTAGCTACTAATAACAACTACTATTTCACCTGAATGCATCCCA  200

seq1  GGTACCAAGCTTTTTTAAAATCAACCCTATGTGTGAATGTTGTGGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAAGCTTTTTTAAAATCAACCCTATGTGTGAATGTTGTGGATAAT  250

seq1  CACAGCAGCCATGTTTTTTCTGTGAAAAAAAAAATGAAACAAACAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCCATGTTTTTTCTGTGAAAAAAAAAATGAAACAAACAAAAAA  300

seq1  AATATTACTTCCAAGTGAAATGTGTTGAGTGCAAAATTAGTTCTGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACTTCCAAGTGAAATGTGTTGAGTGCAAAATTAGTTCTGTCTGG  350

seq1  ATTCTAAATCCACTCTTGTTTTGTTATTACACATTCTCGTGGTCTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATCCACTCTTGTTTTGTTATTACACATTCTCGTGGTCTTTGAT  400

seq1  TCATCCCTATCACGAGTTCTTAAAAAAAGAAAGAAGAAGAAGAAGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTATCACGAGTTCTTAAAAAAAGAAAGAAGAAGAAGAAGAAGAA  450

seq1  GAAGAAGAAGAAGAAGAAGAAG--------AGAAAGAAAGAAAGAAAGAA  492
      ||||||||||||||||||||||        ||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA  500

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAGAA  550

seq1  AGGAAAGAGGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  600

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGA  650

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGAAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGAAAG  700

seq1  AGAGAGAGAGAGAAGTCAAAGTG-AAGTCCAGGCTGGTAG-TTCCTCCAG  740
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  AGAGAGAGAGAGAAGTCAAAGTGAAAGTCCAGGCTGGTAGTTTCCTCCAG  750

seq1  AGTCTGAGGTGCCCATCAA-CACACTG-AGAAGCATA-TCCAGTGTTATC  787
      |||| |||||||||||||| ||||||| ||||||||| ||||||||||||
seq2  AGTCAGAGGTGCCCATCAACCACACTGAAGAAGCATATTCCAGTGTTATC  800

seq1  A-GTATGAGACCTGGTG--AGGAATGA-GGAGGAATGTGATGTTTTCTAT  833
      | |||||||||||||||   ||||||| ||||||||||||||||||||||
seq2  AGGTATGAGACCTGGTGGAGGGAATGAGGGAGGAATGTGATGTTTTCTAT  850

seq1  -GGAATTT  840
       |||||||
seq2  GGGAATTT  858


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