BAC Information

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BAC

Clone NameB6Ng01-329M16
Chromosome3 (Build37)12 (Build37)
Map Location 72,309,673 - 72,310,158116,254,011 - 116,255,066
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329M16.bB6Ng01-329M16.g
ACCGA116653GA116654
length9921,117
definitionB6Ng01-329M16.b B6Ng01-329M16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,309,673 - 72,310,158)(116,254,011 - 116,255,066)
sequence
gaattccaggctattggggatagacctgagattcctaacagtttctgata
agagattcacattcttttcactgccagaatgtgatttgcatctcatgaga
ttagattctgtctctggtagcagactttccatgttatctaaaggaatgtc
tggttgctgctgtactctgagcatgttgggatccttttactcacaacatc
catatttaacatacctacctgacatgaatcccatgatagtacagtcattt
tattttttaaaatgtatttatttttattagatattttctttatatacatt
tcaaatgctatcctgaaatttccctatgccctccttctgcccgcctcccc
tacccacccactctatcttgtgggccctggcaacccttgtattggggcat
atagagtttgcaatgtcaaggtgtctctcttcccagtgatggccgactag
gccatcttctgttacatatgcagcttgagatatgagctctggggttactg
gttagttcacattgttgttccacctatagagttgcagaccccttcagctc
cttgggtgctttatctagcttctccattggggacgctgtgatccatctta
tagatgactgtgagcatccacttctgtatttgccaggcactggcataacc
tcatatgagaaagctataacagggtaccttcagcaaaacctttctttcat
tgtgcaatagtgtctgggtttggtgactgattattggatggatcctcagg
tggggtagtctctggatagtccatcttttggtcttagctccaaactttgt
ctctgtaactcttttcatgggtattttgttccctattctaaggaggaatg
aagtatccacccattggtcttccatttccttgatttttttttgtgtgttt
tgcaaattttatcttagatgttctatgtttctgggctaatatccacttac
cagtgagtgcgtatctaacgacttcttttgtgattgggttac

gaattctccctcactaggccattatccatccttttggaagatcacatgta
cattatggcctgccgacttcaatgtcgaaggctacattagattctaggtc
ttttagatatataacccacaatcatactcttaagaatttttataaaacgc
ttcatatatactcataccttaaacttcattgtacagcttgaattggaatg
attatggaaattattattgcctgcagacatttttttcttaattctattat
gttaaagtatacctacagtaaactacttgttcctagactccctgaagtcg
gatccaggttaacaaagtcaacctgcaaaaagttctcaagcacacctctt
atcatggctgctttcatgtatggtatctgcagggatctctttaaagaaac
aacagctaaacaactcattgaacatggagaacgtgtgcctacctagaatt
atcaaatctgtgcactaatgttcataataatggaaggaattcaacatggt
atcaatggaagaagataaacataaaataagcttttaaaaaaactgatcta
aatagtgtcctgcctcaactgaaggggaaaaggtttctagattacctgat
gataataatttatgtttggtgcaggatgatagatatggatctatttgcat
tcttctacacaccaacatcctgtaagactagcaccatttatcaaagatgc
tgtcattcttcaagtgtatatttctagtttctttaccaagaatcaggtgt
ctatagttatttggatgtaatcttatgtctttgattcaattccactgatc
aaccagcccaattttatacaaatagcatgctagatgttttactatagcac
tgtagtacaacatccttacaatacatacaattaacaatttcctttccaaa
atgttatatagaaaaaaaatctcatccaaatgaccaaaagtaaatataat
tcagaaatgcttgaatgattattgaagcattaccaagattaataaatcat
ggaaataaaccttatttctatcacagagattgcctcagagtgatatatac
acacagacgttttttatcagaaaaagaacagaatttaggttcaatttagg
aatgcatgcatctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72309673_72310158
seq2: B6Ng01-329M16.b_822_1032 (reverse)

seq1  TAACCCAATCACAAAAGAACACACATGCCTGGCGGTGGTGGCACACACCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTAATTCCAACACTTGGGAGGCAGATTTCAGAGGCAGAGGCAGGCGGATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGAGTTCGAGGCCATCCTGGTCTACAAAGTGAGTTCCAGAACAACCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGTACAGAGAAACCCTGTCTCAATAAAGCCAAAAAAAAAAAAAAAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAAAAAAAAAAAAAAAACCAAAAAAACAACAACAAAAAAAAAACAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AACAACAACAATAAAAAACAACAACAACAAAAACAACAAAAAAAGAGAGA  300
                               |||  || | |||||| |||     
seq2  ------------------------TAACCCAATC-ACAAAAGAAG-----  20

seq1  ACACTCATGGTATACG--CTCTCTGATAAGCGGATATTAGCCCAGAAACT  348
          || |   |||||  ||| ||| |||| |||||||||||||||||| 
seq2  ----TCGTTAGATACGCACTCACTGGTAAGTGGATATTAGCCCAGAAACA  66

seq1  TAGAATATCTAAGACACAATTTGCAAAACAC----ATGAAACTCAAG---  391
      ||||| |||||||| | ||||||||||||||    |  ||| |||||   
seq2  TAGAACATCTAAGATAAAATTTGCAAAACACACAAAAAAAAATCAAGGAA  116

seq1  AAGTTAGATTAAAGTGTGGATACTTCATTCCTTCTTAGAATGGGGAACAA  441
      | |  |||  || | ||||||||||||||||| |||||||| ||||||||
seq2  ATGGAAGACCAATGGGTGGATACTTCATTCCTCCTTAGAATAGGGAACAA  166

seq1  AATACCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCTAAGAC  486
      |||||||||| || |||||||||||||||||||  ||||||||||
seq2  AATACCCATGAAAAGAGTTACAGAGACAAAGTTTGGAGCTAAGAC  211


seq1: chr12_116254011_116255066
seq2: B6Ng01-329M16.g_133_1181

seq1  TCAATGTCGAAGGCTACATTAGATTCTAGGTCTTTTAGATATATAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCGAAGGCTACATTAGATTCTAGGTCTTTTAGATATATAACCCA  50

seq1  CAATCATACTCTTAAGAATTTTTATAAAACGCTTCATATATACTCATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATACTCTTAAGAATTTTTATAAAACGCTTCATATATACTCATACC  100

seq1  TTAAACTTCATTGTACAGCTTGAATTGGAATGATTATGGAAATTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTCATTGTACAGCTTGAATTGGAATGATTATGGAAATTATTATT  150

seq1  GCCTGCAGACATTTTTTTCTTAATTCTATTATGTTAAAGTATACCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGACATTTTTTTCTTAATTCTATTATGTTAAAGTATACCTACAG  200

seq1  TAAACTACTTGTTCCTAGACTCCCTGAAGTCGGATCCAGGTTAACAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACTTGTTCCTAGACTCCCTGAAGTCGGATCCAGGTTAACAAAGT  250

seq1  CAACCTGCAAAAAGTTCTCAAGCACACCTCTTATCATGGCTGCTTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCAAAAAGTTCTCAAGCACACCTCTTATCATGGCTGCTTTCATG  300

seq1  TATGGTATCTGCAGGGATCTCTTTAAAGAAACAACAGCTAAACAACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATCTGCAGGGATCTCTTTAAAGAAACAACAGCTAAACAACTCAT  350

seq1  TGAACATGGAGAACGTGTGCCTACCTAGAATTATCAAATCTGTGCACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGGAGAACGTGTGCCTACCTAGAATTATCAAATCTGTGCACTAA  400

seq1  TGTTCATAATAATGGAAGGAATTCAACATGGTATCAATGGAAGAAGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAATAATGGAAGGAATTCAACATGGTATCAATGGAAGAAGATAA  450

seq1  ACATAAAATAAGCTTTTAAAAAAACTGATCTAAATAGTGTCCTGCCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAAGCTTTTAAAAAAACTGATCTAAATAGTGTCCTGCCTCAA  500

seq1  CTGAAGGGGAAAAGGTTTCTAGATTACCTGATGATAATAATTTATGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGGAAAAGGTTTCTAGATTACCTGATGATAATAATTTATGTTTG  550

seq1  GTGCAGGATGATAGATATGGATCTATTTGCATTCTTCTACACACCAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGATGATAGATATGGATCTATTTGCATTCTTCTACACACCAACAT  600

seq1  CCTGTAAGACTAGCACCATTTATCAAAGATGCTGTCATTCTTCAAGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGACTAGCACCATTTATCAAAGATGCTGTCATTCTTCAAGTGTA  650

seq1  TATTTCTAGTTTCTTTACCAAGAATCAGGTGTCTATAGTTATTTGGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAGTTTCTTTACCAAGAATCAGGTGTCTATAGTTATTTGGATGT  700

seq1  AATCTTATGTCTTTGATTCAATTCCACTGATCAACCAGCCCAATTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGTCTTTGATTCAATTCCACTGATCAACCAGCCCAATTTTATA  750

seq1  CAAATAGCATGCTAGATGTTTTACTATAGCACTGTAGTACAACATCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCATGCTAGATGTTTTACTATAGCACTGTAGTACAACATCCTTA  800

seq1  CAATACATACAATTAACAATTTCCTTTCCAAAATGTTATATAGAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATACAATTAACAATTTCCTTTCCAAAATGTTATATAGAAAAAAA  850

seq1  ATCTCATCCAAATGACCAAAAGTAAATATAATTCAGAAATGCTTGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCCAAATGACCAAAAGTAAATATAATTCAGAAATGCTTGAATGA  900

seq1  TTATTGAAGCATTACCAAGATTAATAAATCATGGAAATAAACCTTA-TTC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTATTGAAGCATTACCAAGATTAATAAATCATGGAAATAAACCTTATTTC  950

seq1  TATCAACAGAGATTTGCCTCAAGAAGTGATATATAACACAACAGACGTTT  999
      |||| ||||||| ||||||||   |||||||||| |||| ||||||||||
seq2  TATC-ACAGAGA-TTGCCTCA--GAGTGATATAT-ACAC-ACAGACGTTT  994

seq1  TTTATCAG-AAAAGAACAGGAATTTA-GTTCAATTTTAGGAAAATGGATG  1047
      |||||||| ||||||||| ||||||| |||||| ||||||  |||| |||
seq2  TTTATCAGAAAAAGAACA-GAATTTAGGTTCAA-TTTAGG--AATGCATG  1040

seq1  CATCTGGAG  1056
      |||||||||
seq2  CATCTGGAG  1049


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