BAC Information

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BAC

Clone NameB6Ng01-330E20
Chromosome12 (Build37)
Map Location 94,416,993 - 94,552,897
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039425, LOC628116
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330E20.bB6Ng01-330E20.g
ACCGA117019GA117020
length1,1551,165
definitionB6Ng01-330E20.b B6Ng01-330E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,551,742 - 94,552,897)(94,416,993 - 94,418,149)
sequence
gaattccaaataatctggtctctaataaagacaaatacaccccaaagtca
gcaaacaagatagtaacatttccagaacaagttacctttattttttgaca
ctgagcatcatcctccttgacatttcaaggtgaggattcagacaagaaca
caaactgatgacttttattactgattagcccatgccatcaagtgagttac
tattattctaccaaatctactcctgctcctatatcaccaaaaaagaaaac
ataaacatctccaaataaccttaacaaaatggtgttgagatttaaaagca
gaatgtatcaaagaaaagtgcatggaaggctcctacaggaaatgagttag
ctagctaagcctttgcaatcaccaaacatcagtgggacatctattatcta
gaatcattggaagacttattgaatgggagtctcagaattttcaaggtatt
tctttcaagaggtattgatctttaacacctgtctcctgatgctcctaaag
acacttatcttcttagaaggaaacctatatattgctacaggcatatcaaa
agaatgtcattagaggagtttaaagcatgaaatccatgcctttaaaagaa
attccatcacttgtacagcactatgtgaacctacaaccagcattcccaga
aatatcttcataaatagctcacttatcatttaccagtgtaacaccctggc
tgtgtatctctcagttggcacattaacataaagaataataacccccccaa
aaaaacaagctaaaatattgaaatattggaaaaggtttggattggtaccg
tgtggtttatttttacctgtattttttttttcctgactgtaaagaatttg
atgtagaaatgagcataaatggtacagaagccaaactatgtcctatgtga
gctgtatcacagaagagacactaggaagttttatatctagaagagataaa
gataatgcaagctgttaattgcctctagcaatcccaactaccttttgtca
tctatctatctatctatctatctatctatctatctatctatctatctatc
tatcaatccactatctatctattgcactccagattttattaccgctcagt
acacttctgactattccacaattccaaactccccccacaaaccccacgag
atgtc

gaattcaatgatgcaaattaaggcttcagtgaatatagagtatgagttta
tttccctagaaagttactggtgatctaaagcaagacagcaactctgttca
tagtgtaggtggcctgaattaatggattcattaattactttgataattgt
gatcatgtgagtccccacaggaaccaccctttgtgcctatttaatcccag
cacttgggaggcagaggcaggtggatttctgagttcaaggccagcctggt
ctacagagtgagttccaggacaaccagagctacacagagaaaccctgtct
caaaaaaccaaaagaaaaaaaaaaaaaccaaaaaacaaaaacaacaacaa
caaaaacaccaaaaaataccaaaacaaacaaacaaacaaaaaacaagagc
ttttaaaacccaccaaacccctctgtttgcccctcagaaaggtagtgtgg
tgggactctcccaaagaagggcgcgctcctgttttgagtgtgtctaactt
ttctttcaagcacctttctacctaaatctcacatttaaaatcagtattaa
aataaaataactaggcccacctctgcttcatactgcctgtgcattagatt
cttttcatcatcaaaaccaaagttccagttttacctgtgaggaaggcctt
aaaagattaaaggaactccacaggctatgcagtgcccactggagttgggt
cttcaactttcattccttttacattttattttgtgtaatgtggtaagaat
tgtattccttatctctccaagatttttttttaagaaaatgcttttagatt
gatttattttattctatgtgatgattgttttgtctgcatttcatgtctgt
gaaccatgcacttgcaaaccatatgtgcttgcctggtaatgcagtggtca
ggagccagataccctggaactggagttatggatgttttatgcaccgcctg
ctgtgttgttcaaagaaacaaagttggtgttcattcccaacaagttactc
ttagcttaagtcattcttttcaaggccctcttcatgcaattttccatgga
ttctgtccttccaaatctgccttgaattatttgacaaattccaatggcaa
catagtgacgtgtgaatctgactgttgtggcagcaagaactaaggttatt
caagagaaaacatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_94551742_94552897
seq2: B6Ng01-330E20.b_50_1204 (reverse)

seq1  GACATCCTCGTGGGGGTTGGGGGGGGGGAGGTGTGGGA-TGTGGAATAGT  49
      ||||| ||||||||| ||| ||||||    || ||| | |||||||||||
seq2  GACAT-CTCGTGGGGTTTGTGGGGGG---AGTTTGGAATTGTGGAATAGT  46

seq1  CAGAGTTGGTACTGAGCGGTAAATAAAATCTGGAGTGCAATAGATAGATA  99
      ||||  | |||||||||||| |||||||||||||||||||||||||||||
seq2  CAGAAGT-GTACTGAGCGGT-AATAAAATCTGGAGTGCAATAGATAGATA  94

seq1  ---GGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  146
         | | |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  144

seq1  AGATAGATAGATGACAAAAGGTAGTTGGGATTGCTAGAGGCAATTAACAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATGACAAAAGGTAGTTGGGATTGCTAGAGGCAATTAACAG  194

seq1  CTTGCATTATCTTTATCTCTTCTAGATATAAAACTTCCTAGTGTCTCTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTATCTTTATCTCTTCTAGATATAAAACTTCCTAGTGTCTCTTC  244

seq1  TGTGATACAGCTCACATAGGACATAGTTTGGCTTCTGTACCATTTATGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATACAGCTCACATAGGACATAGTTTGGCTTCTGTACCATTTATGCT  294

seq1  CATTTCTACATCAAATTCTTTACAGTCAGG-AAAAAAAAATACAGGTAAA  345
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTTCTACATCAAATTCTTTACAGTCAGGAAAAAAAAAATACAGGTAAA  344

seq1  AATAAACCACACGGTACCAATCCAAACCTTTTCCAATATTTCAATATTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCACACGGTACCAATCCAAACCTTTTCCAATATTTCAATATTTT  394

seq1  AGCTTGTTTTTTTGGGGGGGTTATTATTCTTTATGTTAATGTGCCAACTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTTTTTTGGGGGGGTTATTATTCTTTATGTTAATGTGCCAACTG  444

seq1  AGAGATACACAGCCAGGGTGTTACACTGGTAAATGATAAGTGAGCTATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACACAGCCAGGGTGTTACACTGGTAAATGATAAGTGAGCTATTT  494

seq1  ATGAAGATATTTCTGGGAATGCTGGTTGTAGGTTCACATAGTGCTGTACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATATTTCTGGGAATGCTGGTTGTAGGTTCACATAGTGCTGTACA  544

seq1  AGTGATGGAATTTCTTTTAAAGGCATGGATTTCATGCTTTAAACTCCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGAATTTCTTTTAAAGGCATGGATTTCATGCTTTAAACTCCTCT  594

seq1  AATGACATTCTTTTGATATGCCTGTAGCAATATATAGGTTTCCTTCTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTCTTTTGATATGCCTGTAGCAATATATAGGTTTCCTTCTAAG  644

seq1  AAGATAAGTGTCTTTAGGAGCATCAGGAGACAGGTGTTAAAGATCAATAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGTGTCTTTAGGAGCATCAGGAGACAGGTGTTAAAGATCAATAC  694

seq1  CTCTTGAAAGAAATACCTTGAAAATTCTGAGACTCCCATTCAATAAGTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAAAGAAATACCTTGAAAATTCTGAGACTCCCATTCAATAAGTCT  744

seq1  TCCAATGATTCTAGATAATAGATGTCCCACTGATGTTTGGTGATTGCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGATTCTAGATAATAGATGTCCCACTGATGTTTGGTGATTGCAAA  794

seq1  GGCTTAGCTAGCTAACTCATTTCCTGTAGGAGCCTTCCATGCACTTTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGCTAGCTAACTCATTTCCTGTAGGAGCCTTCCATGCACTTTTCT  844

seq1  TTGATACATTCTGCTTTTAAATCTCAACACCATTTTGTTAAGGTTATTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATTCTGCTTTTAAATCTCAACACCATTTTGTTAAGGTTATTTG  894

seq1  GAGATGTTTATGTTTTCTTTTTTGGTGATATAGGAGCAGGAGTAGATTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTATGTTTTCTTTTTTGGTGATATAGGAGCAGGAGTAGATTTG  944

seq1  GTAGAATAATAGTAACTCACTTGATGGCATGGGCTAATCAGTAATAAAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAATAGTAACTCACTTGATGGCATGGGCTAATCAGTAATAAAAG  994

seq1  TCATCAGTTTGTGTTCTTGTCTGAATCCTCACCTTGAAATGTCAAGGAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTTTGTGTTCTTGTCTGAATCCTCACCTTGAAATGTCAAGGAGG  1044

seq1  ATGATGCTCAGTGTCAAAAAATAAAGGTAACTTGTTCTGGAAATGTTACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTCAGTGTCAAAAAATAAAGGTAACTTGTTCTGGAAATGTTACT  1094

seq1  ATCTTGTTTGCTGACTTTGGGGTGTATTTGTCTTTATTAGAGACCAGATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTTGCTGACTTTGGGGTGTATTTGTCTTTATTAGAGACCAGATT  1144

seq1  ATTTGGAATTC  1156
      |||||||||||
seq2  ATTTGGAATTC  1155


seq1: chr12_94416993_94418149
seq2: B6Ng01-330E20.g_71_1235

seq1  GAATTCAATGATGCAAATTAAGGCTTCAGTGAATATAGAGTATGAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATGCAAATTAAGGCTTCAGTGAATATAGAGTATGAGTTTA  50

seq1  TTTCCCTAGAAAGTTACTGGTGATCTAAAGCAAGACAGCAACTCTGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGAAAGTTACTGGTGATCTAAAGCAAGACAGCAACTCTGTTCA  100

seq1  TAGTGTAGGTGGCCTGAATTAATGGATTCATTAATTACTTTGATAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGGTGGCCTGAATTAATGGATTCATTAATTACTTTGATAATTGT  150

seq1  GATCATGTGAGTCCCCACAGGAACCACCCTTTGTGCCTATTTAATCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTGAGTCCCCACAGGAACCACCCTTTGTGCCTATTTAATCCCAG  200

seq1  CACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGT  250

seq1  CTACAGAGTGAGTTCCAGGACAACCAGAGCTACACAGAGAAACCCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAACCAGAGCTACACAGAGAAACCCTGTCT  300

seq1  CAAAAAACCAAAAGAAAAAAAAAAAAACCAAAAAACAAAAACAACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCAAAAGAAAAAAAAAAAAACCAAAAAACAAAAACAACAACAA  350

seq1  CAAAAACACCAAAAAATACCAAAACAAACAAACAAACAAAAAACAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACCAAAAAATACCAAAACAAACAAACAAACAAAAAACAAGAGC  400

seq1  TTTTAAAACCCACCAAACCCCTCTGTTTGCCCCTCAGAAAGGTAGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACCCACCAAACCCCTCTGTTTGCCCCTCAGAAAGGTAGTGTGG  450

seq1  TGGGACTCTCCCAAAGAAGGGCGCGCTCCTGTTTTGAGTGTGTCTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTCCCAAAGAAGGGCGCGCTCCTGTTTTGAGTGTGTCTAACTT  500

seq1  TTCTTTCAAGCACCTTTCTACCTAAATCTCACATTTAAAATCAGTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAAGCACCTTTCTACCTAAATCTCACATTTAAAATCAGTATTAA  550

seq1  AATAAAATAACTAGGCCCACCTCTGCTTCATACTGCCTGTGCATTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAACTAGGCCCACCTCTGCTTCATACTGCCTGTGCATTAGATT  600

seq1  CTTTTCATCATCAAAACCAAAGTTCCAGTTTTACCTGTGAGGAAGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATCATCAAAACCAAAGTTCCAGTTTTACCTGTGAGGAAGGCCTT  650

seq1  AAAAGATTAAAGGAACTCCACAGGCTATGCAGTGCCCACTGGAGTTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTAAAGGAACTCCACAGGCTATGCAGTGCCCACTGGAGTTGGGT  700

seq1  CTTCAACTTTCATTCCTTTTACATTTTATTTTGTGTAATGTGGTAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTTCATTCCTTTTACATTTTATTTTGTGTAATGTGGTAAGAAT  750

seq1  TGTATTCCTTATCTCTCCAAGA-TTTTTTTTAAGAAAATGCTTTTAGATT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTATTCCTTATCTCTCCAAGATTTTTTTTTAAGAAAATGCTTTTAGATT  800

seq1  GATTTATTTTATTCTATGTGATGATTGTTTTGTCTGCA-TTCATGTCTGT  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATTTATTTTATTCTATGTGATGATTGTTTTGTCTGCATTTCATGTCTGT  850

seq1  GAACCATGCACTTGCAAACCATATGTGCTTGCCTGGT-ATGCAGTGGTCA  897
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAACCATGCACTTGCAAACCATATGTGCTTGCCTGGTAATGCAGTGGTCA  900

seq1  GGAGCCAGATACCCTGGAACTGGAGTTATGGATG-TTTATGCAC--GCTG  944
      |||||||||||||||||||||||||||||||||| |||||||||   |||
seq2  GGAGCCAGATACCCTGGAACTGGAGTTATGGATGTTTTATGCACCGCCTG  950

seq1  CTGTG-TGTTCAAAGAAACAAAATT-GTG-TCATTCCCAACAAG-TACTC  990
      ||||| |||||||||||||||| || ||| |||||||||||||| |||||
seq2  CTGTGTTGTTCAAAGAAACAAAGTTGGTGTTCATTCCCAACAAGTTACTC  1000

seq1  TTAGCTTTAAGTCAT--CTTTCCAGGCCCTCTTCATGCCATTTTCAATGG  1038
      ||||| |||||||||   |||| ||||||||||||||| |||||| ||||
seq2  TTAGC-TTAAGTCATTCTTTTCAAGGCCCTCTTCATGCAATTTTCCATGG  1049

seq1  AATCTGT-CTTTCTAATCTGCTTGAAATTATTTGTACTAATTTCATTGTG  1087
      | ||||| ||| | ||||||| |  ||||||||| || |||| || || |
seq2  ATTCTGTCCTTCCAAATCTGCCTTGAATTATTTG-ACAAATTCCAATG-G  1097

seq1  CCACATAGTTGTAAGTGTGGTCCCTTTAGTTGTTGTTGGAGAAAGAACAA  1137
      | |||||||   | |||||     | |   |||||| | || |||||| |
seq2  CAACATAGT--GACGTGTG---AATCTGACTGTTGTGGCAGCAAGAACTA  1142

seq1  AGG-TATTCAAGAG--AACATGC  1157
      ||| ||||||||||  |||||||
seq2  AGGTTATTCAAGAGAAAACATGC  1165


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