BAC Information

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BAC

Clone NameB6Ng01-331C08
Chromosome12 (Build37)
Map Location 48,366,498 - 48,502,236
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C08.bB6Ng01-331C08.g
ACCGA117597GA117598
length1,1931,155
definitionB6Ng01-331C08.b B6Ng01-331C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,501,053 - 48,502,236)(48,366,498 - 48,367,649)
sequence
gaattcattaccattgttttaacttttaatccatagcctaattttgatta
tattcccaacaatccctgtactcttttttattttaatgtcatgctagtca
agcattgactttctacgtctcctttgtccatggtagtatttctccccaac
agacatgatggacctttgaggattttgatataaagcatgttaactttctg
ttttataactcataaggcaggcagtatctataaacaggcatttggactcc
attggctttaatttgtttgcaatgatcagactcagaaacccaccttcacc
ctgtctagtttattattcacgattctgaattcagctttggggctgagtgt
catttggagtaaaagaaaattagcaatttggggcgatcctatattgcatt
cactctgcagagcagacggaatatatttttaggcactgcatgtttataac
ctaattttccctcattactttacagaggtgaccttgttctaataccttcg
gcacctgatgttataaaagtgaaattcttttcaaacctgccctgttaaca
tgctcctgctagaaaacaaatgagagataacattaacattcctgccacaa
aatacctgctaatttgcttgcagtgtagagagaaagcctttcattacata
tcacaaacttcatttctgtcgaatgcgtcactaggctttctgaaaagcca
gtgatcatctgatctgcaaagctgccttcagctccagcatcaatcctcac
agcccaactcatcctttatcatatacttgctctctctctctctctttaaa
tttccatcctgtgacaaaattgtattgttcatctgtcaaaacagctttga
tttatgctttatttcatattacagcttcagagaagaaacactcccacagg
aatattctattttcttattaaggtcagaatgaaatctatacagcagaaaa
tgagcaacttgatttcaaacaaatgatgacattattagtcataagactgc
attcttgatcttaaatctgctgatgtgtgttgttccatgttcagtttttt
ttttttttctgaagtgggttttcagagactacctgcatataaggaaccac
actattcccagttagtgaaatatttattaatggaggctacaattagtttc
gggctgtttagaacaattagggtttatcatttagacaataaca
gaattcttttaagtcacttcaaactaagataaaaacatacagtattctgt
tgttcaaactttccactttctcatcatattgtgttgcaggctgataaata
ttcagtctagaacttataacttcaataattttcactaaaactagtgctta
ttcatttaaaaatacctttatatgattaaatattcagaataaaaataaat
taaatagaacttattagcttattacaattttataagaaaaatattatttc
atttatcctgtagtaaaatttacaaaaatacctcaaatcaacaattttgc
atgtattttaagatgattccactagctccagatacaaatgtacataagaa
caagactttttacttggacttcttgcaagatctaactatttctttttatg
accacaaaatatatcatttcagtacaaattttcttcaatggttgtactaa
tatctgtcactatctttaagagaacagtgtttccatattccaaaatggtc
tgttataatgaaaattttagtcctttcactcttaagccataacattgttt
tggaaaaccataattggaggaattttctctcatagttgcatgcatattat
tctagctgtaaagccaccagagccaaggtgaaacactcatttccataaca
gaaaactagtaggtttctctactagaggaaaacataggcaatactcaaca
taattatagaaaaaaagaaaagatttcctgaataggacttcatttgccta
agaactaaggctataattgatatgtgggacttctgaaattaaaatgctcc
cacctagcaatcagcaggcaaagggaaagaccacagaatggcttgggact
taaaaaattcaaaaaaaaaaaaaaagaatagataaggaatctctcaaaaa
agaaaaagcaaatgtttaccatacctaccaagcatggaaatacaaatcaa
acaaccttgagaataacatctcaccccagttagaatggccaatgaccaat
gtagcaacctaaaaaacagtacaggacagatgagggggaaaggaactatt
cttatattcttctccactcctggtgtgactgactataaaactgttaccag
ccactatgttaatctggtacggagaaattccaaagcctaaaatggatcta
ccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48501053_48502236
seq2: B6Ng01-331C08.b_47_1239 (reverse)

seq1  TGTTATTGTCTAAAT-ATAAACC--TATTG-TCT-AACAGCCCCAAA-TT  44
      ||||||||||||||| |||||||   |||| ||| |||||||| ||| | 
seq2  TGTTATTGTCTAAATGATAAACCCTAATTGTTCTAAACAGCCCGAAACTA  50

seq1  ATTGTAAGCTTCATTTAT-AATATTTCACT-ACTGGG-ATAGTGTG--TT  89
      ||||||  || |||| || ||||||||||| |||||| ||||||||  | 
seq2  ATTGTAGCCTCCATTAATAAATATTTCACTAACTGGGAATAGTGTGGTTC  100

seq1  CTTATATGCAGTTAGGTCTCTG-AAACCCACTTTCAG---AAAAAAAAAA  135
      ||||||||||| || ||||||| |||||||| |||||   ||||||||||
seq2  CTTATATGCAGGTA-GTCTCTGAAAACCCAC-TTCAGAAAAAAAAAAAAA  148

seq1  ACTGAACATGGAACAACACACATCAAGCAGATTTTAAGATCAAGAATGCA  185
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  ACTGAACATGGAACAACACACATC-AGCAGA-TTTAAGATCAAGAATGCA  196

seq1  GTCTTATGACTTAATAATGTCATCATTTGTTTGAAATCAAGTTGCTCATT  235
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGAC-TAATAATGTCATCATTTGTTTGAAATCAAGTTGCTCATT  245

seq1  TTCTGCTGTATAGATTTCATTCTGACCTTAATAAGAAAATAGAATATTCC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTATAGATTTCATTCTGACCTTAATAAGAAAATAGAATATTCC  295

seq1  TGTGGGAGTGTTTTCTTCTCTGAAGCTGTAATATGAAATAAAGCATAAAT  335
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGTG-TTTCTTCTCTGAAGCTGTAATATGAAATAAAGCATAAAT  344

seq1  CAAAGCTGTTTTGACAGATGAACAATACAATTTTGTCACAGGATGGAAAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTTTTGACAGATGAACAATACAATTTTGTCACAGGATGGAAAT  394

seq1  TTAAAGAGAGAGAGAGAGAGCAAGTATATGATAAAGGATGAGTTGGGCTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGAGAGAGAGAGAGCAAGTATATGATAAAGGATGAGTTGGGCTG  444

seq1  TGAGGATTGATGCTGGAGCTGAAGGCAGCTTTGCAGATCAGATGATCACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTGATGCTGGAGCTGAAGGCAGCTTTGCAGATCAGATGATCACT  494

seq1  GGCTTTTCAGAAAGCCTAGTGACGCATTCGACAGAAATGAAGTTTGTGAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGAAAGCCTAGTGACGCATTCGACAGAAATGAAGTTTGTGAT  544

seq1  ATGTAATGAAAGGCTTTCTCTCTACACTGCAAGCAAATTAGCAGGTATTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGAAAGGCTTTCTCTCTACACTGCAAGCAAATTAGCAGGTATTT  594

seq1  TGTGGCAGGAATGTTAATGTTATCTCTCATTTGTTTTCTAGCAGGAGCAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGGAATGTTAATGTTATCTCTCATTTGTTTTCTAGCAGGAGCAT  644

seq1  GTTAACAGGGCAGGTTTGAAAAGAATTTCACTTTTATAACATCAGGTGCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGGGCAGGTTTGAAAAGAATTTCACTTTTATAACATCAGGTGCC  694

seq1  GAAGGTATTAGAACAAGGTCACCTCTGTAAAGTAATGAGGGAAAATTAGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATTAGAACAAGGTCACCTCTGTAAAGTAATGAGGGAAAATTAGG  744

seq1  TTATAAACATGCAGTGCCTAAAAATATATTCCGTCTGCTCTGCAGAGTGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACATGCAGTGCCTAAAAATATATTCCGTCTGCTCTGCAGAGTGA  794

seq1  ATGCAATATAGGATCGCCCCAAATTGCTAATTTTCTTTTACTCCAAATGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATATAGGATCGCCCCAAATTGCTAATTTTCTTTTACTCCAAATGA  844

seq1  CACTCAGCCCCAAAGCTGAATTCAGAATCGTGAATAATAAACTAGACAGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCCCCAAAGCTGAATTCAGAATCGTGAATAATAAACTAGACAGG  894

seq1  GTGAAGGTGGGTTTCTGAGTCTGATCATTGCAAACAAATTAAAGCCAATG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTGGGTTTCTGAGTCTGATCATTGCAAACAAATTAAAGCCAATG  944

seq1  GAGTCCAAATGCCTGTTTATAGATACTGCCTGCCTTATGAGTTATAAAAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAAATGCCTGTTTATAGATACTGCCTGCCTTATGAGTTATAAAAC  994

seq1  AGAAAGTTAACATGCTTTATATCAAAATCCTCAAAGGTCCATCATGTCTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTAACATGCTTTATATCAAAATCCTCAAAGGTCCATCATGTCTG  1044

seq1  TTGGGGAGAAATACTACCATGGACAAAGGAGACGTAGAAAGTCAATGCTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAAATACTACCATGGACAAAGGAGACGTAGAAAGTCAATGCTT  1094

seq1  GACTAGCATGACATTAAAATAAAAAAGAGTACAGGGATTGTTGGGAATAT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCATGACATTAAAATAAAAAAGAGTACAGGGATTGTTGGGAATAT  1144

seq1  AATCAAAATTAGGCTATGGATTAAAAGTTAAAACAATGGTAATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATTAGGCTATGGATTAAAAGTTAAAACAATGGTAATGAATTC  1193

seq1: chr12_48366498_48367649
seq2: B6Ng01-331C08.g_67_1221

seq1  GAATTCTTTTAAGTCACTTCAAACTAAGATAAAAACATACAGTATTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAGTCACTTCAAACTAAGATAAAAACATACAGTATTCTGT  50

seq1  TGTTCAAACTTTCCACTTTCTCATCATATTGTGTTGCAGGCTGATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAACTTTCCACTTTCTCATCATATTGTGTTGCAGGCTGATAAATA  100

seq1  TTCAGTCTAGAACTTATAACTTCAATAATTTTCACTAAAACTAGTGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTAGAACTTATAACTTCAATAATTTTCACTAAAACTAGTGCTTA  150

seq1  TTCATTTAAAAATACCTTTATATGATTAAATATTCAGAATAAAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAAAATACCTTTATATGATTAAATATTCAGAATAAAAATAAAT  200

seq1  TAAATAGAACTTATTAGCTTATTACAATTTTATAAGAAAAATATTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAACTTATTAGCTTATTACAATTTTATAAGAAAAATATTATTTC  250

seq1  ATTTATCCTGTAGTAAAATTTACAAAAATACCTCAAATCAACAATTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCTGTAGTAAAATTTACAAAAATACCTCAAATCAACAATTTTGC  300

seq1  ATGTATTTTAAGATGATTCCACTAGCTCCAGATACAAATGTACATAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTAAGATGATTCCACTAGCTCCAGATACAAATGTACATAAGAA  350

seq1  CAAGACTTTTTACTTGGACTTCTTGCAAGATCTAACTATTTCTTTTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTTTTTACTTGGACTTCTTGCAAGATCTAACTATTTCTTTTTATG  400

seq1  ACCACAAAATATATCATTTCAGTACAAATTTTCTTCAATGGTTGTACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAATATATCATTTCAGTACAAATTTTCTTCAATGGTTGTACTAA  450

seq1  TATCTGTCACTATCTTTAAGAGAACAGTGTTTCCATATTCCAAAATGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCACTATCTTTAAGAGAACAGTGTTTCCATATTCCAAAATGGTC  500

seq1  TGTTATAATGAAAATTTTAGTCCTTTCACTCTTAAGCCATAACATTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAATGAAAATTTTAGTCCTTTCACTCTTAAGCCATAACATTGTTT  550

seq1  TGGAAAACCATAATTGGAGGAATTTTCTCTCATAGTTGCATGCATATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACCATAATTGGAGGAATTTTCTCTCATAGTTGCATGCATATTAT  600

seq1  TCTAGCTGTAAAGCCACCAGAGCCAAGGTGAAACACTCATTTCCATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTAAAGCCACCAGAGCCAAGGTGAAACACTCATTTCCATAACA  650

seq1  GAAAACTAGTAGGTTTCTCTACTAGAGGAAAACATAGGCAATACTCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAGTAGGTTTCTCTACTAGAGGAAAACATAGGCAATACTCAACA  700

seq1  TAATTATAGAAAAAAAGAAAAGATTTCCTGAATAGGACTTCATTTGCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAGAAAAAAAGAAAAGATTTCCTGAATAGGACTTCATTTGCCTA  750

seq1  AGAACTAAGGCTATAATTGATATGTGGGACTTCTGAAATTAAAATGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAGGCTATAATTGATATGTGGGACTTCTGAAATTAAAATGCTCC  800

seq1  CACCTAGCAATCAGCAGGGCAAAGGGAAAGACCACAGAATGGCTTGGGAC  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACCTAGCAATCAGCA-GGCAAAGGGAAAGACCACAGAATGGCTTGGGAC  849

seq1  TTAAAAAATTC-AAAAAAAAAAAAAAGAATAGATAAGGAATCTCTCAAAA  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTCAAAAAAAAAAAAAAAGAATAGATAAGGAATCTCTCAAAA  899

seq1  AAGAAAAAGCAAATGTTTACCATACCTACCAAGCATGGAAATACAAATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCAAATGTTTACCATACCTACCAAGCATGGAAATACAAATCA  949

seq1  AACAACCTTGAG-ATAACATCTCACCCCAGTTAGAATGG-CAATGACCAA  997
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  AACAACCTTGAGAATAACATCTCACCCCAGTTAGAATGGCCAATGACCAA  999

seq1  TGTAGCAACCTAAAAAACAGTACAGGACAAGATGAGGGGAAAGGGAACTA  1047
      |||||||||||||||||||||||||||| |||||||||| || |||||||
seq2  TGTAGCAACCTAAAAAACAGTACAGGAC-AGATGAGGGGGAAAGGAACTA  1048

seq1  -TCTTATATTC-TCT-CACTCTTGGTGTGACTGACTATAAAACTGTTA-C  1093
       |||||||||| ||| ||||| |||||||||||||||||||||||||| |
seq2  TTCTTATATTCTTCTCCACTCCTGGTGTGACTGACTATAAAACTGTTACC  1098

seq1  AGCCACTATGTAAATCTGGTACGGAGAAATTTCAAAAAGCTAAAAATGAA  1143
      ||||||||||| ||||||||||||||||||| |  |||||  |||||| |
seq2  AGCCACTATGTTAATCTGGTACGGAGAAATTCC--AAAGCCTAAAATGGA  1146

seq1  TCTACCATG  1152
      |||||||||
seq2  TCTACCATG  1155