BAC Information

Click to search

BAC

Clone NameB6Ng01-331F10
Chromosome12 (Build37)
Map Location 40,723,803 - 40,724,926
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043148
Downstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F10.bB6Ng01-331F10.g
ACCGA117732GA117733
length1,1831,130
definitionB6Ng01-331F10.b B6Ng01-331F10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaact
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggca
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtataaagacagacaagcagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagtattttcaacaattgggtgctg
gcacaactgggtgggttatcatgtagaagaatgcaaatcgatccatactt
atctccttgtactactcaaatctaagtggatcaggaacttcacataaaac
agaagaacactgaacttatagaggagaaagtggggaaaagcttgaagaat
atgggcacagggaaaactcttgaacgaacagcatgctgtacctgtagatc
gagaatgacaaatggaccttaatgaaaacttcc
gaattccattagccagacaatgccccagcccagaccagtacagcctggaa
gtgttgggggaggaagcccatctggccttgcttgggtgtaagactgggct
gggtcaatggcaggttgagggcaggaatggagtagagggattgtttttca
aatgcagtaggtgtgatatcggagtatctgccaaggcctgtccttctcac
attcaccttaggaacagatccaatttagcagtgtgctttgaaaatgcatt
ttaggagagtattattattgttgttatcctttttttttttttccagttta
ggatgcttcaaataaaactggccaatttgggataatacagcagcagggca
gaacaggctgaaaatagtttttctttctttcttttttccttgtttatttc
caaaagactttccagtatccagctaggcttataaacctaatcgtattaca
atgggaaatgtaaggcttagcattttattgtattacaaaggcaattgccg
tctgcctcgggtctgagaattcttgtctctcagttgggttctctgactct
taacaaatgtgaaggggattgtagtcaaatgaatacagaacgttgcctcc
ctaggggcttttaataataattagtaataataataaacatatggagaggt
tttccctgactcaaactcagtacttcagtatatggtattttcattactct
ttctaacatccccctcagtcctcagtgtccacccaggagggtagggacct
tggtttgatgattgttccgttgatggtgacttctcagagagaaggggaag
aaaccaccccactttggtgaaacacagcctttccattttgctggggcttt
caattcaggccctcaccccagcatagccctctcaacaccctagactccct
cctctgcatgccatttccatcttacaaaagaagtgagacttacccatttc
ctattcgcataacaaccaacacccttcttcccccccaagctgtacaagca
taaatgtggtatggttacgtgccattgattctgaatagacagctctagga
tgtctatccacttgtataatcttcttgaaccacattctttctttcacaaa
atgcctattgtcaaggtatgtctaatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40723803_40724926
seq2: B6Ng01-331F10.g_69_1198 (reverse)

seq1  CTAGATTAAGACAATTACCTTAACAATAGGCATTTTGTGGAAAGAAGATT  50
      ||||||| |||||  |||||| ||||||||||||||||| ||  |||| |
seq2  CTAGATT-AGACA--TACCTTGACAATAGGCATTTTGTGAAAGAAAGAAT  47

seq1  GTGCTCAGAGA----TATACCAAGTGGATAGACATCCTAGAGCTGTCTA-  95
      ||| |   |||    |||| ||||||||||||||||||||||||||||| 
seq2  GTGGTTCAAGAAGATTATA-CAAGTGGATAGACATCCTAGAGCTGTCTAT  96

seq1  TCAGAATTCATGCAACCTTAACCATA-CACATTTATGCTGTTACAGCTTG  144
      |||||||  |||  | | |||||||| ||||||||||||  |||||||| 
seq2  TCAGAATCAATGGCA-CGTAACCATACCACATTTATGCTTGTACAGCTT-  144

seq1  GGGGGGGAAGAAGGGTGTTGGTTGTTATGCG-ATAGG-AATGGGTAAGTC  192
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GGGGGGGAAGAAGGGTGTTGGTTGTTATGCGAATAGGAAATGGGTAAGTC  194

seq1  TCACTTCTTTTGTAAGATGGAAATGGCATGCAGA-GAGGGAGTCTAGGGT  241
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCACTTCTTTTGTAAGATGGAAATGGCATGCAGAGGAGGGAGTCTAGGGT  244

seq1  GTTGAGAGGGCTATGCTGGGGTGAGGGCCTGAATTGAAAGCCCCAGCAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGGGCTATGCTGGGGTGAGGGCCTGAATTGAAAGCCCCAGCAAA  294

seq1  ATGG-AAGGCTGTGTTTCACC-AAGT-GGGTGGTTTCTTCCCCTTCTCTC  338
      |||| |||||||||||||||| |||| |||||||||||||||||||||||
seq2  ATGGAAAGGCTGTGTTTCACCAAAGTGGGGTGGTTTCTTCCCCTTCTCTC  344

seq1  TGAGAAGTCACCATCAACGGAACAATCATCAAACCAAGGTCCCTACCCTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTCACCATCAACGGAACAATCATCAAACCAAGGTCCCTACCCTC  394

seq1  CTGGGTGGACACTGAGGACTGAGGGGGATGTTAGAAAGAGTAATGAAAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGACACTGAGGACTGAGGGGGATGTTAGAAAGAGTAATGAAAAT  444

seq1  ACCATATACTGAAGTACTGAGTTTGAGTCAGGGAAAACCTCTCCATATGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATACTGAAGTACTGAGTTTGAGTCAGGGAAAACCTCTCCATATGT  494

seq1  TTATTATTATTACTAATTATTATTAAAAGCCCCTAGGGAGGCAACGTTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTACTAATTATTATTAAAAGCCCCTAGGGAGGCAACGTTCT  544

seq1  GTATTCATTTGACTACAATCCCCTTCACATTTGTTAAGAGTCAGAGAACC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATTTGACTACAATCCCCTTCACATTTGTTAAGAGTCAGAGAACC  594

seq1  CAACTGAGAGACAAGAATTCTCAGACCCGAGGCAGACGGCAATTGCCTTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGAGACAAGAATTCTCAGACCCGAGGCAGACGGCAATTGCCTTT  644

seq1  GTAATACAATAAAATGCTAAGCCTTACATTTCCCATTGTAATACGATTAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAATAAAATGCTAAGCCTTACATTTCCCATTGTAATACGATTAG  694

seq1  GTTTATAAGCCTAGCTGGATACTGGAAAGTCTTTTGGAAATAAACAAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAGCCTAGCTGGATACTGGAAAGTCTTTTGGAAATAAACAAGGA  744

seq1  AAAAAGAAAGAAAGAAAAACTATTTTCAGCCTGTTCTGCCCTGCTGCTGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAGAAAAACTATTTTCAGCCTGTTCTGCCCTGCTGCTGT  794

seq1  ATTATCCCAAATTGGCCAGTTTTATTTGAAGCATCCTAAACTGGAAAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAAATTGGCCAGTTTTATTTGAAGCATCCTAAACTGGAAAAAA  844

seq1  AAAAAAAGGATAACAACAATAATAATACTCTCCTAAAATGCATTTTCAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGATAACAACAATAATAATACTCTCCTAAAATGCATTTTCAAA  894

seq1  GCACACTGCTAAATTGGATCTGTTCCTAAGGTGAATGTGAGAAGGACAGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGCTAAATTGGATCTGTTCCTAAGGTGAATGTGAGAAGGACAGG  944

seq1  CCTTGGCAGATACTCCGATATCACACCTACTGCATTTGAAAAACAATCCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAGATACTCCGATATCACACCTACTGCATTTGAAAAACAATCCC  994

seq1  TCTACTCCATTCCTGCCCTCAACCTGCCATTGACCCAGCCCAGTCTTACA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCATTCCTGCCCTCAACCTGCCATTGACCCAGCCCAGTCTTACA  1044

seq1  CCCAAGCAAGGCCAGATGGGCTTCCTCCCCCAACACTTCCAGGCTGTACT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAAGGCCAGATGGGCTTCCTCCCCCAACACTTCCAGGCTGTACT  1094

seq1  GGTCTGGGCTGGGGCATTGTCTGGCTAATGGAATTC  1124
      ||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGCTGGGGCATTGTCTGGCTAATGGAATTC  1130