BAC Information

Click to search

BAC

Clone NameB6Ng01-332F04
Chromosome12 (Build37)
Map Location 56,076,746 - 56,210,135
singlet/doubletdoublet
Overlap geneBaz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2
Downstream gene1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F04.bB6Ng01-332F04.g
ACCGA118457GA118458
length1,0911,098
definitionB6Ng01-332F04.b B6Ng01-332F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,209,046 - 56,210,135)(56,076,746 - 56,077,862)
sequence
gaattctgggagtatatacatgggatacccaacctagttaatcgatatat
tctgaagaatgtttgccaatatgggaaaataatcagtagctacagcaact
gttgtctccaataggacttgtgggatattttaaggagaagaaagagagtt
cagtttttgtagtctaatgttctttaagtagtctatggctcattgataaa
aagcttttcacgattaatcatctactatcttgattctgaagaggtaaacc
atgtgtcatggtagtccttgactttaaccctgagttcaggttctcttttc
tttttttctttagtattgggacagaacccagggacccagacaggccctac
cacagagctaagccccaactcctacaacttggaaactcagcagtaacttt
tccagtatgagactactggctttaatattttgtttctgaattttgttctt
ttaggtgatagtgttttccagctcacctttgaaaagtcctttgatacctc
ccatctttttgaccatctgtgcaaacttggtatactgggtcagaagttct
tgaacatctcttgttgacacacctgatccccgggcaactctttggattct
ccctggttgcttactgaaaaccttggcaccatctgtactgtccagttctg
aagacaaagacaaataatttcatcacataaaattatcattcattatcaca
gtagccaagcactctgcctctgtcctaaaaatggaagcgtgtttattaga
aaataggaataaagccaaacgatacaaaacttgggactgaataaggaaga
agtgactcacaaaggaaattcaaacgggtgatagaaagcttcagagattt
tacagatgcctttatttatgtttatgttttagatatagggtcttatatat
ccctagctagactgaaaatctctatgtagttgagggttaccctgaacttc
caatcctcctgcttccacttcttgagggctggaattacaggtgtttgata
ctcgaccctgtttcctgggttctacagagagattcctgttatgttaggta
ctctaccatatgagctcagttaggggtgcagggtgttgggg
gaattcttactagaccaggggcaaacaactgtatttcaagtttgagcctt
cctttgttctttttacagtaagcactgactttaccttcatagaaaaacaa
aacagaagaggtcaagacgacaatacagaagcggggagggggagcgagtg
tggtggctactcctgcttgtcagctcgactacagctggaatgaactacat
acagtccagaaatggagggcacacctgtgatcctgaggccggaagaccca
ggcttctgacccggatcatgacatgggataacacaggcttttgaaccaga
tcttgaggtatagtggccataagaagcttaagcccagggaagggagcaca
cactgggcctgtttctgctggaggcccacatgaggaccttggaagaagga
agactccctcttcttcgcctgtttgcacttccttgccagcacatctgctg
gaacctacctcttcagcattccagcttatacagaagaccagtgaaacaac
tggcctggtgggactgagcggctactagactcttgggacttcccattcgc
agctgcccactgttgggttaattggattgtagactgtaagtcgttaaata
aattcccttactatatagagacattccgtaagttctgtgactctggagaa
cactgacaatacagcaagtgaggagggagaacttgaaaaagcagagattt
ttgaaatattaaacaaaattaggatatgaggctggccatacgtggtttgc
tcctgagtgaccaagccagagtcagcaggctcaggtaggaaagcccaaca
gtttcgaggccaccaaagtgagttccggttcagctgaagctacagtaagg
ctccgcctcaaaacataaactgaggtgccaggagtgctgacctacaccag
cacatgcagcagtgctgacctgcatgcagcacctgggagggagagagcag
agagcaatcagctagcctgcgtgtgcgctaccccagatcctatcttagaa
caaagccgggttatagctaggggtggggataaactacaatcacagcagtg
cctttgactacagtgatttcttaaatggacttattttctgaaatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56209046_56210135
seq2: B6Ng01-332F04.b_45_1135 (reverse)

seq1  -CCCCACACCCTGCACCCCTAACTGAGCTCATATGGTAGAGTACCTAACA  49
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACCCTGCACCCCTAACTGAGCTCATATGGTAGAGTACCTAACA  50

seq1  T-ACAGGAATCTCTCTGTTAGAACCCAGGAAACAGGGTCGAGTATCAAAC  98
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACAGGAATCTCTCTG-TAGAACCCAGGAAACAGGGTCGAGTATCAAAC  99

seq1  ACCTGTAATTCCAGCCCTCAAGAAGTGGAAGCAGGAGGATTGGAAGTTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAATTCCAGCCCTCAAGAAGTGGAAGCAGGAGGATTGGAAGTTCA  149

seq1  GGGTAACCCTCAACTACATAGAGATTTTCAGTCTAGCTAGGGATATATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACCCTCAACTACATAGAGATTTTCAGTCTAGCTAGGGATATATAA  199

seq1  GACCCTATATCTAAAACATAAACATAAATAAAGGCATCTGTAAAATCTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATATCTAAAACATAAACATAAATAAAGGCATCTGTAAAATCTCT  249

seq1  GAAGCTTTCTATCACCCGTTTGAATTTCCTTTGTGAGTCACTTCTTCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTCTATCACCCGTTTGAATTTCCTTTGTGAGTCACTTCTTCCTT  299

seq1  ATTCAGTCCCAAGTTTTGTATCGTTTGGCTTTATTCCTATTTTCTAATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCCCAAGTTTTGTATCGTTTGGCTTTATTCCTATTTTCTAATAA  349

seq1  ACACGCTTCCATTTTTAGGACAGAGGCAGAGTGCTTGGCTACTGTGATAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTTCCATTTTTAGGACAGAGGCAGAGTGCTTGGCTACTGTGATAA  399

seq1  TGAATGATAATTTTATGTGATGAAATTATTTGTCTTTGTCTTCAGAACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATAATTTTATGTGATGAAATTATTTGTCTTTGTCTTCAGAACTG  449

seq1  GACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTACAGATGGTGCCAAGGTTTTCAGTAAGCAACCAGGGAGAATCCA  499

seq1  AAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGCCCGGGGATCAGGTGTGTCAACAAGAGATGTTCAAGAACTTC  549

seq1  TGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGTATACCAAGTTTGCACAGATGGTCAAAAAGATGGGAGGTATC  599

seq1  AAAGGACTTTTCAAAGGTGAGCTGGAAAACACTATCACCTAAAAGAACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTTTCAAAGGTGAGCTGGAAAACACTATCACCTAAAAGAACAA  649

seq1  AATTCAGAAACAAAATATTAAAGCCAGTAGTCTCATACTGGAAAAGTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAAACAAAATATTAAAGCCAGTAGTCTCATACTGGAAAAGTTAC  699

seq1  TGCTGAGTTTCCAAGTTGTAGGAGTTGGGGCTTAGCTCTGTGGTAGGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTTCCAAGTTGTAGGAGTTGGGGCTTAGCTCTGTGGTAGGGCC  749

seq1  TGTCTGGGTCCCTGGGTTCTGTCCCAATACTAAAGAAAAAAAGAAAAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTCCCTGGGTTCTGTCCCAATACTAAAGAAAAAAAGAAAAGAG  799

seq1  AACCTGAACTCAGGGTTAAAGTCAAGGACTACCATGACACATGGTTTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAACTCAGGGTTAAAGTCAAGGACTACCATGACACATGGTTTACC  849

seq1  TCTTCAGAATCAAGATAGTAGATGATTAATCGTGAAAAGCTTTTTATCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAATCAAGATAGTAGATGATTAATCGTGAAAAGCTTTTTATCAA  899

seq1  TGAGCCATAGACTACTTAAAGAACATTAGACTACAAAAACTGAACTCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATAGACTACTTAAAGAACATTAGACTACAAAAACTGAACTCTCT  949

seq1  TTCTTCTCCTTAAAATATCCCACAAGTCCTATTGGAGACAACAGTTGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCTTAAAATATCCCACAAGTCCTATTGGAGACAACAGTTGCTG  999

seq1  TAGCTACTGATTATTTTCCCATATTGGCAAACATTCTTCAGAATATATCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTGATTATTTTCCCATATTGGCAAACATTCTTCAGAATATATCG  1049

seq1  ATTAACTAGGTTGGGTATCCCATGTATATACTCCCAGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAGGTTGGGTATCCCATGTATATACTCCCAGAATTC  1091

seq1: chr12_56076746_56077862
seq2: B6Ng01-332F04.g_64_1161

seq1  GAATTCTTACTAGACCAGGGGCAAACAACTGTATTTCAAGTTTGAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTAGACCAGGGGCAAACAACTGTATTTCAAGTTTGAGCCTT  50

seq1  CCTTTGTTCTTTTTACAGTAAGCACTGACTTTACCTTCATAGAAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCTTTTTACAGTAAGCACTGACTTTACCTTCATAGAAAAACAA  100

seq1  AACAGAAGAGGTCAAGACGACAATACAGAAGCGGGGAGGGGGAGCGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGAGGTCAAGACGACAATACAGAAGCGGGGAGGGGGAGCGAGTG  150

seq1  TGGTGGCTACTCCTGCTTGTCAGCTCGACTACAGCTGGAATGAACTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTACTCCTGCTTGTCAGCTCGACTACAGCTGGAATGAACTACAT  200

seq1  ACAGTCCAGAAATGGAGGGCACACCTGTGATCCTGAGGCCGGAAGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCAGAAATGGAGGGCACACCTGTGATCCTGAGGCCGGAAGACCCA  250

seq1  GGCTTCTGACCCGGATCATGACATGGGATAACACAGGCTTTTGAACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGACCCGGATCATGACATGGGATAACACAGGCTTTTGAACCAGA  300

seq1  TCTTGAGGTATAGTGGCCATAAGAAGCTTAAGCCCAGGGAAGGGAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGTATAGTGGCCATAAGAAGCTTAAGCCCAGGGAAGGGAGCACA  350

seq1  CACTGGGCCTGTTTCTGCTGGAGGCCCACATGAGGACCTTGGAAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCCTGTTTCTGCTGGAGGCCCACATGAGGACCTTGGAAGAAGGA  400

seq1  AGACTCCCTCTTCTTCGCCTGTTTGCACTTCCTTGCCAGCACATCTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCCTCTTCTTCGCCTGTTTGCACTTCCTTGCCAGCACATCTGCTG  450

seq1  GAACCTACCTCTTCAGCATTCCAGCTTATACAGAAGACCAGTGAAACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTACCTCTTCAGCATTCCAGCTTATACAGAAGACCAGTGAAACAAC  500

seq1  TGGCCTGGTGGGACTGAGCGGCTACTAGACTCTTGGGACTTCCCATTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGTGGGACTGAGCGGCTACTAGACTCTTGGGACTTCCCATTCGC  550

seq1  AGCTGCCCACTGTTGGGTTAATTGGATTGTAGACTGTAAGTCGTTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCACTGTTGGGTTAATTGGATTGTAGACTGTAAGTCGTTAAATA  600

seq1  AATTCCCTTACTATATAGAGACATTCCGTAAGTTCTGTGACTCTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTACTATATAGAGACATTCCGTAAGTTCTGTGACTCTGGAGAA  650

seq1  CACTGACAATACAGCAAGTGAGGAGGGAGAACTTGAAAAAGCAGAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACAATACAGCAAGTGAGGAGGGAGAACTTGAAAAAGCAGAGATTT  700

seq1  TTGAAATATTAAACAAAATTAGGATATGAGGCTGGCCATACGTGGTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATTAAACAAAATTAGGATATGAGGCTGGCCATACGTGGTTTGC  750

seq1  TCCTGAGTGACCAAGCCAGAGTCAGCAGGCTCAGGTAGGAAAGCCCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGACCAAGCCAGAGTCAGCAGGCTCAGGTAGGAAAGCCCAACA  800

seq1  GTTTCGAGGCCACCAAAGTGAGTTCCGGTTCAGCTGAAGCTACAGTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAGGCCACCAAAGTGAGTTCCGGTTCAGCTGAAGCTACAGTAAGG  850

seq1  CTCCGCCTCAAAACATAAACTGAGGTGCCAGGAGTGCTGACCTACACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTCAAAACATAAACTGAGGTGCCAGGAGTGCTGACCTACACCAG  900

seq1  CACATGCAGCAGTGCTGACCTGCATGCAGCACCTGGGAGGGAGAGAGGCA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACATGCAGCAGTGCTGACCTGCATGCAGCACCTGGGAGGGAGAGA-GCA  949

seq1  GGAGAGCAAATCAAGCTAGCCTGCGTGTGCGCTACCCCAGATCCTATCTT  1000
       |||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  -GAGAGC-AATC-AGCTAGCCTGCGTGTGCGCTACCCCAGATCCTATCTT  996

seq1  AGAAACAAAAGGCCCGGGTTATAGCTAGGGGTGGGGATAAAACTACCATT  1050
      || ||||||    ||||||||||||||||||||||||| ||||||| || 
seq2  AG-AACAAA---GCCGGGTTATAGCTAGGGGTGGGGAT-AAACTACAAT-  1040

seq1  CAACAGGCAGTGCCCTTTTGAACTACAGTGATTTCTTAATATGAACCTTT  1100
        ||| ||||||||  |||| |||||||||||||||||| ||| ||  ||
seq2  -CACA-GCAGTGCC--TTTG-ACTACAGTGATTTCTTAA-ATGGAC--TT  1082

seq1  ATTTTCTGAAAATATAC  1117
      |||||||| ||||||||
seq2  ATTTTCTG-AAATATAC  1098