BAC Information

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BAC

Clone NameB6Ng01-332F16
Chromosome12 (Build37)
Map Location 100,850,535 - 100,987,988
singlet/doubletdoublet
Overlap gene2610021K21Rik
Upstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
Downstream geneTdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F16.bB6Ng01-332F16.g
ACCGA118479GA118480
length1,1841,121
definitionB6Ng01-332F16.b B6Ng01-332F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,986,794 - 100,987,988)(100,850,535 - 100,851,669)
sequence
gaattctttttttttcctctttaccttttaatccctccattgcctatctt
tgtagcccatatcttatatatataaagttccttctcttaaactggctttg
attccctgctgacagactcggtggcaccatggtggtcccaggtggcctgg
gaatggtgccccaaatgccatgcccaacagctcactggcccaagatggaa
tgctagtaatctgtgtcatgcagtgacatcatgattaatcgcactgtccc
ctgtggttgatggtgatgaactgccgggagcaagtaactgggcagaccag
gtggctgccacagttaactgttacaatgtaacagtgatatccaggagagg
tgatacctataattctaactctgttgatgctctgtagggaaaaaaaggct
aagcccaaatctaagcacactgtagaagtcagatgtgagacatctcaaat
gtgtcctctcttcacctccactgcgactgccctctattcctgagtgtaat
tttgtagcaacttcccaggcctagcttgcccagcttataatccatttata
tacagcaaccgaaggactttaaagccgtgcctataatcaaaacctctagc
aacatccttctgcattcccagcaaaattaacttcttctacctcgtctcaa
gccatttccttcctctgtataaccttgtctgctcagctctctctggcctg
tggctcccttataatagaatcctccattctggggactaggttcctctcgt
atgactgtttttcaccattcttacttatataagcattatctgattactta
ctcgtctgtctctgctgaactgcaccccagtaagatagactgtctttctc
ttagctactgtattctcaggcccctgtaccaattcctgtcacttaataca
tacatggctggtgtcttatttggctgcagctgacaactcaatacagatct
gggtcacctggaaagagtaatctcaactgaaggagtgcccagatcggact
ggcctgtgcggtgttttgtggggcctttttcttaggtgctaactgacaga
agaagccgatcaactatgggtggctccattccctagaaaaggtgcccagg
ccttgtttagaaagcagctggacaagcgagtttctctgtgtttcttgcct
caccctgtctcagtgccttcttccaagtgctttc
gaattcaagttctcatgtctgtgcaccaaacactttattgactaagccat
ctccccaaaccctttcagattccaaaagagattcaatcaaccgctgtgtt
ctctaacctttagtcccagttaaaaggcttgaaagaatttgcatttgaag
tgcacggttggggcaaggtgaggcagatgaggtgccctatcctgcttggg
taaggcaggtgaatacccgttagtttaaagggtttaatatttattatgca
ggagacaaagagttctaaaaagcacctgcctgtggtatggtataatcagc
tctgcattccagcccagtcccagctgtactgtgagggaagtatttctccc
gaacatacttgctctccacccatcaggcacgtggtgtactggggtttaag
aaaccaaaggccagagggctgaaggggcaggattcggagtctcccctgcc
cctcctcgaggacagtttggttcgttatgtattctgtagcttctgggcca
gggatgggcaggtcgtgtagatccctcactgtctctgtgttttgttcttt
tgcttttccttattgtacaagtgccaggaaagggggtgaaacctctctca
cccccaaatgaattgtcactctctgaactgaaacaacaacaacaaaccaa
aggccacatactctgaaacggccatcacgatggctgtctgtaatggctcc
acctaccaactaagacagctaatttaactgagcttgagctaagccgaata
gttcctagaaacgtcctaacccccaacaacaggctttgtgagaaagagta
ttctgagctctagaagagggaacagagacagaaacacttctgggaagaag
aacatttggtctctcagtaactactaggcatgtcagcctgtgctctcggc
gtgagacccttgtctgccattactctgacctgtttgcttccatagaagct
tgtgtgagcacatgaagctagacatttaaatattatagtaaaaacatatt
gtttttttccagaacttttctgagctagtttctgggaaacacacttttac
tttgacatctgctttctccctttgttatttcacagatatgcctagatggt
tatatacagactgcactcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100986794_100987988
seq2: B6Ng01-332F16.b_48_1231 (reverse)

seq1  GAAAGCAACTTGGGAAAGAAGGCACTGAAGACAGGGGTTTGAGGCAGAAA  50
      |||||| ||||||  |||||||||||| ||||||||   |||||||  ||
seq2  GAAAGC-ACTTGG--AAGAAGGCACTG-AGACAGGG---TGAGGCAAGAA  43

seq1  CCACAGAGAAACTCTGCTTGCTCAGCTGCCTTTCTTAAACAGCCCTGGCC  100
       ||||||||||||| |||||  |||||| |||||| ||  || ||||| |
seq2  ACACAGAGAAACTC-GCTTGTCCAGCTG-CTTTCTAAACAAGGCCTGGGC  91

seq1  CACCTGTCTAGGG-ATGGAGCCACCCATAGTTGGATCGGCCTTCTTCTGT  149
        | | ||||||| |||||||||||||||||| |||||| ||||||||||
seq2  ACCTTTTCTAGGGAATGGAGCCACCCATAGTT-GATCGG-CTTCTTCTGT  139

seq1  CAGTTAGCACCTAAGAAAAGGCCCCCAC-AAACACCGCCACAGGCCAGTC  198
      ||||||||||||||||||| | |||||| |||||||| ||||||||||||
seq2  CAGTTAGCACCTAAGAAAAAGGCCCCACAAAACACCG-CACAGGCCAGTC  188

seq1  CGATCTGGGCACTCCTTCAGTTGAGATTACCTCTTTCCAGGTGACCCAGA  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGATCTGGGCACTCCTTCAGTTGAGATTA-CTCTTTCCAGGTGACCCAGA  237

seq1  TCTGTATTGAGTTGTCAGCTGCAGCCAAATAAGACACCAGCCATGTATGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTGAGTTGTCAGCTGCAGCCAAATAAGACACCAGCCATGTATGT  287

seq1  ATTAAGTGACAGGAATTGGTACAGGGGCCTGAGAATACAGTAGCTAAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGACAGGAATTGGTACAGGGGCCTGAGAATACAGTAGCTAAGAG  337

seq1  AAAGACAGTCTATCTTACTGGGGTGCAGTTCAGCAGAGACAGACGAGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGTCTATCTTACTGGGGTGCAGTTCAGCAGAGACAGACGAGTAA  387

seq1  GTAATCAGATAATGCTTATATAAGTAAGAATGGTGAAAAACAGTCATACG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGATAATGCTTATATAAGTAAGAATGGTGAAAAACAGTCATACG  437

seq1  AGAGGAACCTAGTCCCCAGAATGGAGGATTCTATTATAAGGGAGCCACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACCTAGTCCCCAGAATGGAGGATTCTATTATAAGGGAGCCACAG  487

seq1  GCCAGAGAGAGCTGAGCAGACAAGGTTATACAGAGGAAGGAAATGGCTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGAGCTGAGCAGACAAGGTTATACAGAGGAAGGAAATGGCTTG  537

seq1  AGACGAGGTAGAAGAAGTTAATTTTGCTGGGAATGCAGAAGGATGTTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGGTAGAAGAAGTTAATTTTGCTGGGAATGCAGAAGGATGTTGCT  587

seq1  AGAGGTTTTGATTATAGGCACGGCTTTAAAGTCCTTCGGTTGCTGTATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTTTGATTATAGGCACGGCTTTAAAGTCCTTCGGTTGCTGTATAT  637

seq1  AAATGGATTATAAGCTGGGCAAGCTAGGCCTGGGAAGTTGCTACAAAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTATAAGCTGGGCAAGCTAGGCCTGGGAAGTTGCTACAAAATT  687

seq1  ACACTCAGGAATAGAGGGCAGTCGCAGTGGAGGTGAAGAGAGGACACATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGAATAGAGGGCAGTCGCAGTGGAGGTGAAGAGAGGACACATT  737

seq1  TGAGATGTCTCACATCTGACTTCTACAGTGTGCTTAGATTTGGGCTTAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTCTCACATCTGACTTCTACAGTGTGCTTAGATTTGGGCTTAGC  787

seq1  CTTTTTTTCCCTACAGAGCATCAACAGAGTTAGAATTATAGGTATCACCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCCTACAGAGCATCAACAGAGTTAGAATTATAGGTATCACCT  837

seq1  CTCCTGGATATCACTGTTACATTGTAACAGTTAACTGTGGCAGCCACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGATATCACTGTTACATTGTAACAGTTAACTGTGGCAGCCACCTG  887

seq1  GTCTGCCCAGTTACTTGCTCCCGGCAGTTCATCACCATCAACCACAGGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGTTACTTGCTCCCGGCAGTTCATCACCATCAACCACAGGGG  937

seq1  ACAGTGCGATTAATCATGATGTCACTGCATGACACAGATTACTAGCATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGATTAATCATGATGTCACTGCATGACACAGATTACTAGCATTC  987

seq1  CATCTTGGGCCAGTGAGCTGTTGGGCATGGCATTTGGGGCACCATTCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGGCCAGTGAGCTGTTGGGCATGGCATTTGGGGCACCATTCCCA  1037

seq1  GGCCACCTGGGACCACCATGGTGCCACCGAGTCTGTCAGCAGGGAATCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTGGGACCACCATGGTGCCACCGAGTCTGTCAGCAGGGAATCAA  1087

seq1  AGCCAGTTTAAGAGAAGGAACTTTATATATATAAGATATGGGCTACAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTTAAGAGAAGGAACTTTATATATATAAGATATGGGCTACAAAG  1137

seq1  ATAGGCAATGGAGGGATTAAAAGGTAAAGAGGAAAAAAAAAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAATGGAGGGATTAAAAGGTAAAGAGGAAAAAAAAAGAATTC  1184

seq1: chr12_100850535_100851669
seq2: B6Ng01-332F16.g_66_1186

seq1  GAATTCAAGTTCTCATGTCTGTGCACCAAACACTTTATTGACTAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCTCATGTCTGTGCACCAAACACTTTATTGACTAAGCCAT  50

seq1  CTCCCCAAACCCTTTCAGATTCCAAAAGAGATTCAATCAACCGCTGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAACCCTTTCAGATTCCAAAAGAGATTCAATCAACCGCTGTGTT  100

seq1  CTCTAACCTTTAGTCCCAGTTAAAAGGCTTGAAAGAATTTGCATTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCTTTAGTCCCAGTTAAAAGGCTTGAAAGAATTTGCATTTGAAG  150

seq1  TGCACGGTTGGGGCAAGGTGAGGCAGATGAGGTGCCCTATCCTGCTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGTTGGGGCAAGGTGAGGCAGATGAGGTGCCCTATCCTGCTTGGG  200

seq1  TAAGGCAGGTGAATACCCGTTAGTTTAAAGGGTTTAATATTTATTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGGTGAATACCCGTTAGTTTAAAGGGTTTAATATTTATTATGCA  250

seq1  GGAGACAAAGAGTTCTAAAAAGCACCTGCCTGTGGTATGGTATAATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAAGAGTTCTAAAAAGCACCTGCCTGTGGTATGGTATAATCAGC  300

seq1  TCTGCATTCCAGCCCAGTCCCAGCTGTACTGTGAGGGAAGTATTTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTCCAGCCCAGTCCCAGCTGTACTGTGAGGGAAGTATTTCTCCC  350

seq1  GAACATACTTGCTCTCCACCCATCAGGCACGTGGTGTACTGGGGTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACTTGCTCTCCACCCATCAGGCACGTGGTGTACTGGGGTTTAAG  400

seq1  AAACCAAAGGCCAGAGGGCTGAAGGGGCAGGATTCGGAGTCTCCCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGGCCAGAGGGCTGAAGGGGCAGGATTCGGAGTCTCCCCTGCC  450

seq1  CCTCCTCGAGGACAGTTTGGTTCGTTATGTATTCTGTAGCTTCTGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCGAGGACAGTTTGGTTCGTTATGTATTCTGTAGCTTCTGGGCCA  500

seq1  GGGATGGGCAGGTCGTGTAGATCCCTCACTGTCTCTGTGTTTTGTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGCAGGTCGTGTAGATCCCTCACTGTCTCTGTGTTTTGTTCTTT  550

seq1  TGCTTTTCCTTATTGTACAAGTGCCAGGAAAGGGGGTGAAACCTCTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCTTATTGTACAAGTGCCAGGAAAGGGGGTGAAACCTCTCTCA  600

seq1  CCCCCAAATGAATTGTCACTCTCTGAACTGAAACAACAACAACAAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAATGAATTGTCACTCTCTGAACTGAAACAACAACAACAAACCAA  650

seq1  AGGCCACATACTCTGAAACGGCCATCACGATGGCTGTCTGTAATGGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACATACTCTGAAACGGCCATCACGATGGCTGTCTGTAATGGCTCC  700

seq1  ACCTACCAACTAAGACAGCTAATTTAACTGAGCTTGAGCTAAGCCGAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAACTAAGACAGCTAATTTAACTGAGCTTGAGCTAAGCCGAATA  750

seq1  GTTCCTAGAAACGTCCTAACCCCCAACAACAGGCTTTGTGAGAAAGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGAAACGTCCTAACCCCCAACAACAGGCTTTGTGAGAAAGAGTA  800

seq1  TTCTGAGCTCTAGAAGAGGGAACAGAGACAGAAACACTTCTGGGAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCTCTAGAAGAGGGAACAGAGACAGAAACACTTCTGGGAAGAAG  850

seq1  AACATTTGGTCTCTCAGTAACTACTAGGCATGTCAGCCTGTGCTCTCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGTCTCTCAGTAACTACTAGGCATGTCAGCCTGTGCTCTCGGC  900

seq1  GTGAGACCCTTGTCTGCCATTACTCTGACCTGTTTGCTTCCATAGAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCCTTGTCTGCCATTACTCTGACCTGTTTGCTTCCATAGAAGCT  950

seq1  TGTGTGAGCACATGAAGCTAGACATTTAAATATTATAGTAAAAACATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGCACATGAAGCTAGACATTTAAATATTATAGTAAAAACATATT  1000

seq1  GTTTTTTTCCAAGAACCTTTTCTGAGCTAAGTTTCTGGGAAACACACCTT  1050
      |||||||||| |||| |||||||||||| ||||||||||||||||| |||
seq2  GTTTTTTTCC-AGAA-CTTTTCTGAGCT-AGTTTCTGGGAAACACA-CTT  1046

seq1  TTACTTTGGACATCTGGCTTTTCTCCCTTTGGTTTATTTCACAGATATTG  1100
      ||||||| ||||||||   ||||||||||||  |||||||||||||| ||
seq2  TTACTTT-GACATCTG--CTTTCTCCCTTTG--TTATTTCACAGATA-TG  1090

seq1  GCTAGATGTGTTATATACCAAGAACTGCACCCAGG  1135
       ||||||| |||||||||  || ||||||| ||||
seq2  CCTAGATG-GTTATATAC--AG-ACTGCACTCAGG  1121