BAC Information

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BAC

Clone NameB6Ng01-332J13
Chromosome12 (Build37)
Map Location 81,989,857 - 82,100,932
singlet/doubletdoublet
Overlap geneSfrs5, Slc10a1
Upstream geneLOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik
Downstream geneSmoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J13.bB6Ng01-332J13.g
ACCGA118651GA118652
length1,153899
definitionB6Ng01-332J13.b B6Ng01-332J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,099,784 - 82,100,932)(81,989,857 - 81,990,747)
sequence
gaattctattgtttcgaaaaagattaaattaatgagcccagagaaggctc
gcttgccagcacacgcagcaggttaggagtgctttaaatggtggctctcc
catttaaacaagggcagctcccccaagggagggtggcttttgactaaatc
tgaactcatggggggatggggtcacacctgaagggcagaggccaaggatg
ctgtcaaacatccagacacacacaagacagccctcacaagaaagacccca
gctaaaatgtcaacagtgccaaacacccagctttaaagtcatacacacct
gggttcaaactccaggtgtacaatttcagcaagcctgcagcctttccagc
ctggatttgcacatctgtaaagatgggtaaacattgcatttggagttaaa
gcagtcctctagtctgtgctggggttggcgaaaacattctgatttttaaa
atgaataaaaagaggtaggcggatcgctaggagttcaagaccagcttggt
ctacctagagagttttaggacacccaggactacatagagagaccctgtct
taataattaaataaataaataagtctacttaaaaggtgtgacagttgggt
catcacacatgaagtggcccagcctggaaactgtatttgatacctagagc
tgtcacttgcttctttcccgggtgtttggagctgaaacccttaggagaac
cttcaggcctctttgtcttccgtagggcatctgaacctcctacagggcca
gctgcaccgcggttgggttgcgtctaaagacccacgatccgagtggagga
cggcctcatttccggtgacagtggacttgagcagcctgcctctcctttgg
aaccgcgcagcgggtccaatgccaattagctgagcctgaaaaatgagtgt
gctctccgctctccagggggacgcaaggtgcccccagcccgggcctgggg
ttgctgccccgtccccctattgtgcctttcaacaagagcgtttttattga
aagagttgagtgcatctaatgcagtatccgtgtcggccccatcgagccat
gggctggaagcgaggccgcgcagctgccgcgcctcacaccgcctcgcaac
taagaagggcgccgtgggagaatttgcctccctttggaacgctctatctg
gtt
gaattcatggctttctttccttttttttttttttttttggtttttctgta
tagccctgggtgtcctggaactcactttgtagaccaggctggcctcgaac
tcagaaatccgcctgcctctgcctcccaagtgctgggaataaaggcatgc
gccaccaccaccatgtctttcttttctcttctcttctcttctcttctctt
ctcttctcttctcttctcttctcttcttttcatttctttcattcattctt
tttagcagagtatccctggctgcctggatctctttatttagaccaggctg
gcctctaaatcacatagatctgactgcctctgtctgctcagtgctgggat
tagaggtatgtaccactacacccagataggctcagatttttaatatacaa
aaattgacatagcccccattgattgataaacaatgcagaaataatgtgaa
tatgtatatacacacttaatgtacacacagatatttctcagttcttctca
gagggtttgggagcagtggcaacccaaggacagtgagaaagggactgata
ttgagatcattgctttttatttctttcaattcatttatttttaggtgtaa
gagtgttttgcctctatgtatgcctgtgctctatgtgtgtgcagtaccat
cagtggccagaagagggcatgaaatcaccttgaaatcacaaatgggtcct
tttggacgagcagccagaactcttaaccactgaaccatctctctagcctc
agtttactttttaaaaaaaaaactattttccagggatggagagatgcaaa
gtggtttagagcaacttgctgctctgccgagggcttgggtttcggttccc
agccacacacacacattgtttggctcacaactattttttaactgcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_82099784_82100932
seq2: B6Ng01-332J13.b_47_1199 (reverse)

seq1  AACCAGAT-GAGCCGTTCAAAGGGGAGCAAATTCT-CCACGGCGCCCTCC  48
      |||||||| ||||  | |||||||  ||||||||| |||||||||||| |
seq2  AACCAGATAGAGCGTTCCAAAGGGAGGCAAATTCTCCCACGGCGCCCTTC  50

seq1  TTTGTTGCGAG--CGTGTGAGGCGGCGGCAGCTGCGC-GCCTCGCTCCCA  95
      || ||||||||   ||||||||| ||||||||||||| |||||||| |||
seq2  TTAGTTGCGAGGCGGTGTGAGGC-GCGGCAGCTGCGCGGCCTCGCTTCCA  99

seq1  GCCCATGGCTCGATGGGGCGGACACGGATAACTGCATTAGATGCACTCAG  145
      ||||||||||||||||||| ||||||||| ||||||||||||||||||| 
seq2  GCCCATGGCTCGATGGGGCCGACACGGAT-ACTGCATTAGATGCACTCAA  148

seq1  CTCTTTTCAAT-AAAACGCTCTTGTTG-AAGGCACAATAGGGGGAACGGG  193
      ||| ||||||| ||||||||||||||| |||||||||||||||| |||||
seq2  CTC-TTTCAATAAAAACGCTCTTGTTGAAAGGCACAATAGGGGG-ACGGG  196

seq1  GCAGCAACCCCAGG-CCGGGCTGGGGGCACCCTGCGTCCCCCTGGAGAGC  242
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GCAGCAACCCCAGGCCCGGGCTGGGGGCACCTTGCGTCCCCCTGGAGAGC  246

seq1  GGAGAGCACACTCATTTTTCAGGCTCAGCTAATTGGCATTGGACCCGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCACACTCATTTTTCAGGCTCAGCTAATTGGCATTGGACCCGCTG  296

seq1  CGCGGTTCCAAAGGAGAGGCAGGCTGCTCAAGTCCACTGTCACCGGAAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTCCAAAGGAGAGGCAGGCTGCTCAAGTCCACTGTCACCGGAAAT  346

seq1  GAGGCCGTCCTCCACTCGGATCGTGGGTCTTTAGACGCAACCCAACCGCG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGTCCTCCACTCGGATCGTGGGTCTTTAGACGCAACCCAACCGCG  396

seq1  GTGCAGCTGGCCCTGTAGGAGGTTCAGATGCCCTACGGAAGACAAAGAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCTGGCCCTGTAGGAGGTTCAGATGCCCTACGGAAGACAAAGAGG  446

seq1  CCTGAAGGTTCTCCTAAGGGTTTCAGCTCCAAACACCCGGGAAAGAAGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGTTCTCCTAAGGGTTTCAGCTCCAAACACCCGGGAAAGAAGCA  496

seq1  AGTGACAGCTCTAGGTATCAAATACAGTTTCCAGGCTGGGCCACTTCATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGCTCTAGGTATCAAATACAGTTTCCAGGCTGGGCCACTTCATG  546

seq1  TGTGATGACCCAACTGTCACACCTTTTAAGTAGACTTATTTATTTATTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGACCCAACTGTCACACCTTTTAAGTAGACTTATTTATTTATTTA  596

seq1  ATTATTAAGACAGGGTCTCTCTATGTAGTCCTGGGTGTCCTAAAACTCTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGACAGGGTCTCTCTATGTAGTCCTGGGTGTCCTAAAACTCTC  646

seq1  TAGGTAGACCAAGCTGGTCTTGAACTCCTAGCGATCCGCCTACCTCTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGACCAAGCTGGTCTTGAACTCCTAGCGATCCGCCTACCTCTTTT  696

seq1  TATTCATTTTAAAAATCAGAATGTTTTCGCCAACCCCAGCACAGACTAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTTAAAAATCAGAATGTTTTCGCCAACCCCAGCACAGACTAGA  746

seq1  GGACTGCTTTAACTCCAAATGCAATGTTTACCCATCTTTACAGATGTGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTAACTCCAAATGCAATGTTTACCCATCTTTACAGATGTGCA  796

seq1  AATCCAGGCTGGAAAGGCTGCAGGCTTGCTGAAATTGTACACCTGGAGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGCTGGAAAGGCTGCAGGCTTGCTGAAATTGTACACCTGGAGTT  846

seq1  TGAACCCAGGTGTGTATGACTTTAAAGCTGGGTGTTTGGCACTGTTGACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCAGGTGTGTATGACTTTAAAGCTGGGTGTTTGGCACTGTTGACA  896

seq1  TTTTAGCTGGGGTCTTTCTTGTGAGGGCTGTCTTGTGTGTGTCTGGATGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTGGGGTCTTTCTTGTGAGGGCTGTCTTGTGTGTGTCTGGATGT  946

seq1  TTGACAGCATCCTTGGCCTCTGCCCTTCAGGTGTGACCCCATCCCCCCAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCATCCTTGGCCTCTGCCCTTCAGGTGTGACCCCATCCCCCCAT  996

seq1  GAGTTCAGATTTAGTCAAAAGCCACCCTCCCTTGGGGGAGCTGCCCTTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGATTTAGTCAAAAGCCACCCTCCCTTGGGGGAGCTGCCCTTGT  1046

seq1  TTAAATGGGAGAGCCACCATTTAAAGCACTCCTAACCTGCTGCGTGTGCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGGAGAGCCACCATTTAAAGCACTCCTAACCTGCTGCGTGTGCT  1096

seq1  GGCAAGCGAGCCTTCTCTGGGCTCATTAATTTAATCTTTTTCGAAACAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCGAGCCTTCTCTGGGCTCATTAATTTAATCTTTTTCGAAACAAT  1146

seq1  AGAATTC  1149
      |||||||
seq2  AGAATTC  1153

seq1: chr12_81989857_81990747
seq2: B6Ng01-332J13.g_65_963

seq1  GAATTCATGGCTCTCTTTCCTTTTTTTTTTTTTTTTTTGGTTTTTCTGTA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCTTTCTTTCCTTTTTTTTTTTTTTTTTTGGTTTTTCTGTA  50

seq1  TAGCCCTGGGTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGGTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  100

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGAATAAAGGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGAATAAAGGCATGC  150

seq1  GCCACCACCACCATGTCTTTCTTTTCTCTTCTCTTCTCTTCTCTTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCACCATGTCTTTCTTTTCTCTTCTCTTCTCTTCTCTTCTCTT  200

seq1  CTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCATTTCTTTCATTCATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTTCTCTTCTCTTCTCTTCTTTTCATTTCTTTCATTCATTCTT  250

seq1  TTTAGCAGAGTATCCCTGGCTGCCTGGATCTCTTTATTTAGACCAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGAGTATCCCTGGCTGCCTGGATCTCTTTATTTAGACCAGGCTG  300

seq1  GCCTCTAAATCACATAGATCTGACTGCCTCTGTCTGCTCAGTGCTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAATCACATAGATCTGACTGCCTCTGTCTGCTCAGTGCTGGGAT  350

seq1  TAGAGGTATGTACCACTACACCCAGATAGGCTCAGATTTTTAATATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTATGTACCACTACACCCAGATAGGCTCAGATTTTTAATATACAA  400

seq1  AAATTGACATAGCCCCCATTGATTGATAAACAATGCAGAAATAATGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACATAGCCCCCATTGATTGATAAACAATGCAGAAATAATGTGAA  450

seq1  TATGTATATACACACTTAATGTACACACAGATATTTCTCAGTTCTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATACACACTTAATGTACACACAGATATTTCTCAGTTCTTCTCA  500

seq1  GAGGGTTTGGGAGCAGTGGCAACCCAAGGACAGTGAGAAAGGGACTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGGGAGCAGTGGCAACCCAAGGACAGTGAGAAAGGGACTGATA  550

seq1  TTGAGATCATTGC-TTTTATTTCTTTCAATTCATTTATTTTTAGGTGTAA  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCATTGCTTTTTATTTCTTTCAATTCATTTATTTTTAGGTGTAA  600

seq1  GAGTGTTTTGCCTCTATGTATGCCTGTGCTCTATGTGTGTGCAGTACCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTGCCTCTATGTATGCCTGTGCTCTATGTGTGTGCAGTACCAT  650

seq1  CAGTGGCCAGAAGAGGGCATGAAATCACCTTGAAATCACAAATGGGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCCAGAAGAGGGCATGAAATCACCTTGAAATCACAAATGGGTCCT  700

seq1  TTTGGACGAGCAGCCAGAACTCTTAACCACTGAACCATCTCTCTAGCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACGAGCAGCCAGAACTCTTAACCACTGAACCATCTCTCTAGCCTC  750

seq1  AGTTTACTTTTTAAAAAAAAAACTA-TTTCCAGGGATGGAGAGATGCAAA  798
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTTTACTTTTTAAAAAAAAAACTATTTTCCAGGGATGGAGAGATGCAAA  800

seq1  GTGGTTAAGAGC-ACTTGCTGCTCTGCCGAGGGCCTGGG-TTCGGTTCCC  846
      |||||| ||||| ||||||||||||||||||||| |||| ||||||||||
seq2  GTGGTTTAGAGCAACTTGCTGCTCTGCCGAGGGCTTGGGTTTCGGTTCCC  850

seq1  AG-CACACACACACAT--GTTGGCTCACAACTA-TCTCTAACTGCAATT  891
      || |||||||||||||   |||||||||||||| | | |||||||||||
seq2  AGCCACACACACACATTGTTTGGCTCACAACTATTTTTTAACTGCAATT  899