BAC Information

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BAC

Clone NameB6Ng01-332J20
Chromosome12 (Build37)
Map Location 75,215,147 - 75,216,215
singlet/doubletsinglet
Overlap geneSyt16
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream gene1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J20.bB6Ng01-332J20.g
ACCGA118665GA118666
length1,1131,080
definitionB6Ng01-332J20.b B6Ng01-332J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtcaatgaacatagtatatctatcaacttacccacttagtt
tccttctgttatttatttttttccaaaatgttttaccattcctttcgtaa
tcttcccacttgccatgattgaagttattctctgctatcttacatgatgt
atttctattagaatactaatactctaaaaacttaatttgttaatttttac
tgatgtacttgaatacaattctaaatgagtacaaatctgtagagaatctt
gtgatttaatgcagacaatcagattttctatatataatgttagtttcatt
tattcctttcaagttttacctattttgttgctatgccttatgctattaag
ctgcctggaatgttactgtcaagaaagttctctctggaccacatattact
aggtgcatatctttctaagatttctcctgtaccaaagacacttaaagtcc
taaaactaaattcccctaaatttcttgccagttaaatcccagttagattc
cagtagtgaatgctacccacaaaaggtcaccaagtagaagaaaatggaaa
atataatcatttgtagttgacacaggagactcattgtgttttggatttcc
tggatgttttgggttaggagctttttgccttttgctttttctctgattgt
tgggtcaatgttttctatggtatcttctgcacccaaggttctctcttcta
tctcttgtattctgtcggtgatccttgcatctatgactcctgatctcttt
cctaggttttttaactccagggttgtctccctttatgatttctttattgt
ttctgattccatttttagatcttggatggctttgttcatttccttcgcct
gtttgattgtgttttcctgtaattcttttaagggattttttatgtttcct
cttttaaggacttctaccctgtttatctgtgttcttcttggtatcttctt
taagggagttatttaatgtctctttttcaaagtccttctattcatcattg
tgagtagttgaattttagattgagtccttgctttttcccaatggtgatgg
atgtatccagggacttggctatgtttgggaagaatttggtttctgaagaa
atgtcaagttacc
gaattcaccagctgagagtggaatgatggggacgtgtgaggtatcaaagg
acttctgaaaaaagaggatgaattaattgaaccctaaggttgataatact
gcattggtttaattggagtgagccaattcacaaattgagcacttctgtgg
gaattttaaatatccccatcttcaactgcaaagccctgaaatgtaatcag
actgtggtggttcccacagatgttgcttgaagctgtccttcagcttccac
actttacagtattagaaggaaaggatcttggttaacccttaaaagaaagg
tatgatttctgttacaagcgatcagcacctagtgtgttataaaccagagc
tttgctttatgtgacaaagtttattcatttacatgtctgcaaagtacatg
aataaacacactactttctgcattgtgacaaagcctttgacagctcccct
gtgatcctacctgtgtacttttgcatgttgtttgtctaatggtgttttgt
tttgaacttttgaatccataaagacaaatgtaattaatcaccaagataca
actgagatccactggggatcattctagatgagtatatttacacaatttct
acctcatctttccccaccttttaactcttccagtgtctccccactccctt
tgaaattcatcacctcttctttaaaaattatatatgtgtgcacctatatg
catgtataaatacagcctgctgagtccatttggcactgctcatatgtata
tgtgtttaggggtgaccacttgggattggagatcatccatggagaagact
aatttctctcttactgcagccattaattgtttatagctccttattaagag
cagagtcttgtgagatttccccaatccacaatgtcctgtgaatttgtact
taagattgtggaggcaggacttgtataggtaaatgtgttttttgagattt
ctttggggtgcagcttccctgtcacatgtagtggggcactgttctcacag
aagatgtccccttttctctggcttctatagtcattcccttactcaatgat
tattacattaggtgttaggagttttgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75215147_75216215
seq2: B6Ng01-332J20.g_69_1148

seq1  GAATTCACCAGCTGAGAGTGGAATGATGGGGACGTGTGAGGTATCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGCTGAGAGTGGAATGATGGGGACGTGTGAGGTATCAAAGG  50

seq1  ACTTCTGAAAAAAGAGGATGAATTAATTGAACCCTAAGGTTGATAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAAAAAGAGGATGAATTAATTGAACCCTAAGGTTGATAATACT  100

seq1  GCATTGGTTTAATTGGAGTGAGCCAATTCACAAATTGAGCACTTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTTTAATTGGAGTGAGCCAATTCACAAATTGAGCACTTCTGTGG  150

seq1  GAATTTTAAATATCCCCATCTTCAACTGCAAAGCCCTGAAATGTAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAATATCCCCATCTTCAACTGCAAAGCCCTGAAATGTAATCAG  200

seq1  ACTGTGGTGGTTCCCACAGATGTTGCTTGAAGCTGTCCTTCAGCTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTGGTTCCCACAGATGTTGCTTGAAGCTGTCCTTCAGCTTCCAC  250

seq1  ACTTTACAGTATTAGAAGGAAAGGATCTTGGTTAACCCTTAAAAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAGTATTAGAAGGAAAGGATCTTGGTTAACCCTTAAAAGAAAGG  300

seq1  TATGATTTCTGTTACAAGCGATCAGCACCTAGTGTGTTATAAACCAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTCTGTTACAAGCGATCAGCACCTAGTGTGTTATAAACCAGAGC  350

seq1  TTTGCTTTATGTGACAAAGTTTATTCATTTACATGTCTGCAAAGTACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTATGTGACAAAGTTTATTCATTTACATGTCTGCAAAGTACATG  400

seq1  AATAAACACACTACTTTCTGCATTGTGACAAAGCCTTTGACAGCTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACACTACTTTCTGCATTGTGACAAAGCCTTTGACAGCTCCCCT  450

seq1  GTGATCCTACCTGTGTACTTTTGCATGTTGTTTGTCTAATGGTGTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTACCTGTGTACTTTTGCATGTTGTTTGTCTAATGGTGTTTTGT  500

seq1  TTTGAACTTTTGAATCCATAAAGACAAATGTAATTAATCACCAAGATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTTTGAATCCATAAAGACAAATGTAATTAATCACCAAGATACA  550

seq1  ACTGAGATCCACTGGGGATCATTCTAGATGAGTATATTTACACAATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCCACTGGGGATCATTCTAGATGAGTATATTTACACAATTTCT  600

seq1  ACCTCATCTTTCCCCACCTTTTAACTCTTCCAGTGTCTCCCCACTCCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCTTTCCCCACCTTTTAACTCTTCCAGTGTCTCCCCACTCCCTT  650

seq1  TGAAATTCATCACCTCTTCTTTAAAAATTATATATGTGTGCACCTATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCATCACCTCTTCTTTAAAAATTATATATGTGTGCACCTATATG  700

seq1  CATGTATAAATACAGCCTGCTGAGTCCATTTGGCACTGCTCATATGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAAATACAGCCTGCTGAGTCCATTTGGCACTGCTCATATGTATA  750

seq1  TGTGTTTAGGGGTGACCACTTGGGATTGGAGATCATCCATGGAGAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGGGGTGACCACTTGGGATTGGAGATCATCCATGGAGAAGACT  800

seq1  AATTTCTCTCTTACTGCAGCCATTAATTGTTTATAGCTCCTTATTAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTCTTACTGCAGCCATTAATTGTTTATAGCTCCTTATTAAGAG  850

seq1  CAGAGTCTTGTGAGATTTCCCCAATCCACAATGTCCTGTGAATTTGTAC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGAGTCTTGTGAGATTTCCCCAATCCACAATGTCCTGTGAATTTGTACT  900

seq1  TAAGATTGTGGAGGCAGGACTTGTATAGGTAAATGTG-TTTTTGAGATTT  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAGATTGTGGAGGCAGGACTTGTATAGGTAAATGTGTTTTTTGAGATTT  950

seq1  CTT--GGGTGCAGCTTCCCTGTCACATGTAGT-GGGCACTG-TCTCACAG  994
      |||  ||||||||||||||||||||||||||| |||||||| ||||||||
seq2  CTTTGGGGTGCAGCTTCCCTGTCACATGTAGTGGGGCACTGTTCTCACAG  1000

seq1  AAGATGTCCCC-TTTCTCTGGCTTCTATAGTCATTCCCTACTTCAATGA-  1042
      ||||||||||| |||||||||||||||||||||||||||   ||||||| 
seq2  AAGATGTCCCCTTTTCTCTGGCTTCTATAGTCATTCCCTTACTCAATGAT  1050

seq1  TATTACAT--AGTGTTAGGAG-TTTGGGAT  1069
      ||||||||   |||||||||| ||||||||
seq2  TATTACATTAGGTGTTAGGAGTTTTGGGAT  1080