BAC Information

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BAC

Clone NameB6Ng01-333C18
Chromosome12 (Build37)
Map Location 90,277,217 - 90,413,512
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039191, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333C18.bB6Ng01-333C18.g
ACCGA119062GA119063
length1,2141,058
definitionB6Ng01-333C18.b B6Ng01-333C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,412,286 - 90,413,512)(90,277,217 - 90,278,288)
sequence
gaattcatcaatgaccacaaagtgtcccgcttactgtgtatagcactcct
actttgctgggggccttggcaccgcagagctcagactgacttccttcagg
gcaaagagaaactatgctgatggataggtcttgagatggaataagacaca
taacttgctattgtgtaatagttccacagcaaacacccgaagccaggcaa
accagcatctgggatgtgtctgtcacctgggcacttgccacaaacctagt
aacctttttactttcttcacagcagaataaaatgatggtagtcttttacg
aatggccccacagaaaaaaactgtattggtaggtactccccagtctttcc
tgcagagaggggacagcccgcaggccagtccctcttttgttctcactatg
ggctctagcctgcaagtctagacacactggtttgttaaaaggccctggag
tcaatgcctggacaagatcaatacggctttttatgacacaatgaaaactt
tctattttgttaaatgtgcctaatctaccatttctgcggtactcctaaag
ctttcagtggcaagcttgagcccaggtgattaaagccctgttcggagaca
caaactgggggaactgtgccaaaggagaaacacaaatcctggacgcctga
gccaggctgtctttttagaactaactatgcatctcgctcgcctcaagcaa
aaagacatagcagtaaggaggagctggtgttactggtaaaatgcaaactg
ctccattcctaggttcccaagtagggaaagataatggcacacagtaatta
aggatggactctggataaaaggacagggagggtcggctctatcagaggag
ggtcaagtccccagaaaggatgttaaaaaaaatatcactgatctgactca
ggaagcctaaataaaaggcaaacagcctttactgatcccaatttcaatta
tagtaccaatattgtatacaaaactagaatattgctttattttcacgttt
ctttttctcagatacctgtaatgcttcagaagcagagattttttgcctta
gtataaaaaggcaggagaaaaaatatatcgaaacatctatggcacttcag
ctttacatatagaaaaaggcgccagttagacaggtatatttaaaatattt
gaatgaattagctagactcttttcgagagctaacggataggaattcaagt
tctggccttattaa
gaattcataggctttttacatgtgactaagaacaggctgaagactgggtt
tctctatttagttgagtctctataaccttctatttctagtcaatgccatg
gtctgtgtaactttctgaatacacccagtactgcctggctttagatttgt
ggtgtgaattctttccatcattaaaatattcacatttctgtttctctggt
tccttaaatgactttttcccataaagaatctggatgatacttttggagtg
tgatttttaaatcactctcacttgtgctctgaagaattccttttggtact
catttactttatcgttctcggtcttagggtagagtcaatcctggcttcat
agatgcttaggacacaggctattcttgatattatttatttacttctgggc
tgtgttggctcatgaaaaacaagtagaaaatacatttgttagatgtctgt
cattttgttttttgtttaacaaaacatttgtccttaaatttaatgattat
gttattgctagatatttgatatttctgcaatatttgaaatgtgagataaa
aaggcaaatacagaggacctgtgtttgattactagcacccacataatgga
aacaactgtctgtcatttcagttccaggggattaaatatgtcttctagac
tctgggttccatgcatacatgtgatgaacaggcacatacacgaacaaccc
cccacccccgtgcccatgcacacaaaataaaatatatacttaaaaaagag
aaagagaaataaagagaccggcctccgtgatctgaaactctttgaattct
agagatatctgaaagtctgcattttgttttctttgtggtatctcagaaat
cagagaatgatttcataatgacagtaaaaacacgtgttaaaggaatcatg
aatctgcacatttttttcttcatgctgtagagggcaacgtgatatcatcg
ctacaccctgagaaagaattagaagtagatgagagagtcacatttgagga
aagtgccatattgggtagagcaaggagagtatatacaagatggaggagtg
taggaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90412286_90413512
seq2: B6Ng01-333C18.b_51_1264 (reverse)

seq1  TTAATA--GGCAGAATTTGAATTCCTATACCCTTTAACTCTCTAAAAGAG  48
      ||||||  | ||||| ||||||||||||  || ||| ||||| |||||| 
seq2  TTAATAAGGCCAGAACTTGAATTCCTAT--CCGTTAGCTCTCGAAAAGA-  47

seq1  GTCTTAGCTAATTTCTATCAAATATTTTAAATATAACCCTTGTTCTACTG  98
      ||| ||||||| |||  ||||||||||||||||||   | |||   ||||
seq2  GTC-TAGCTAA-TTCATTCAAATATTTTAAATATA---CCTGTCTAACTG  92

seq1  GCGCC-TTTTCTATATGTAAAAGCCTGAAGTGCAATAGATGTTTGGAATA  147
      ||||| |||||||||||||||   ||||||||| |||||||||| | |||
seq2  GCGCCTTTTTCTATATGTAAA--GCTGAAGTGCCATAGATGTTTCG-ATA  139

seq1  TA-TTTTTCTCTTGCCCTTTTTATACTAAGGCAAAAAAATCTTCTGCTTT  196
      || |||||||| || ||||||||||||||||| |||||||| |||||  |
seq2  TATTTTTTCTCCTG-CCTTTTTATACTAAGGC-AAAAAATC-TCTGC--T  184

seq1  TCTGAAGCATTACAGGTATCTGAGAAAAAGAAACGGTGAAAATAAAGCAA  246
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTGAAGCATTACAGGTATCTGAGAAAAAGAAAC-GTGAAAATAAAGCAA  233

seq1  TATTCTAGTTTTGTATACAATATTGGTACTATAATTGAAATTGGGATCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGTTTTGTATACAATATTGGTACTATAATTGAAATTGGGATCAG  283

seq1  TAAAGGCTGTTTGCCTTTTATTTAGGCTTCCTGAGTCAGATCAGTGATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGTTTGCCTTTTATTTAGGCTTCCTGAGTCAGATCAGTGATAT  333

seq1  TTTTTTTAACATCCTTTCTGGGGACTTGACCCTCCTCTGATAGAGCCGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAACATCCTTTCTGGGGACTTGACCCTCCTCTGATAGAGCCGAC  383

seq1  CCTCCCTGTCCTTTTATCCAGAGTCCATCCTTAATTACTGTGTGCCATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGTCCTTTTATCCAGAGTCCATCCTTAATTACTGTGTGCCATTA  433

seq1  TCTTTCCCTACTTGGGAACCTAGGAATGGAGCAGTTTGCATTTTACCAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTACTTGGGAACCTAGGAATGGAGCAGTTTGCATTTTACCAGT  483

seq1  AACACCAGCTCCTCCTTACTGCTATGTCTTTTTGCTTGAGGCGAGCGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGCTCCTCCTTACTGCTATGTCTTTTTGCTTGAGGCGAGCGAGA  533

seq1  TGCATAGTTAGTTCTAAAAAGACAGCCTGGCTCAGGCGTCCAGGATTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTTAGTTCTAAAAAGACAGCCTGGCTCAGGCGTCCAGGATTTGT  583

seq1  GTTTCTCCTTTGGCACAGTTCCCCCAGTTTGTGTCTCCGAACAGGGCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTTTGGCACAGTTCCCCCAGTTTGTGTCTCCGAACAGGGCTTT  633

seq1  AATCACCTGGGCTCAAGCTTGCCACTGAAAGCTTTAGGAGTACCGCAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCTGGGCTCAAGCTTGCCACTGAAAGCTTTAGGAGTACCGCAGAA  683

seq1  ATGGTAGATTAGGCACATTTAACAAAATAGAAAGTTTTCATTGTGTCATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATTAGGCACATTTAACAAAATAGAAAGTTTTCATTGTGTCATA  733

seq1  AAAAGCCGTATTGATCTTGTCCAGGCATTGACTCCAGGGCCTTTTAACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCGTATTGATCTTGTCCAGGCATTGACTCCAGGGCCTTTTAACAA  783

seq1  ACCAGTGTGTCTAGACTTGCAGGCTAGAGCCCATAGTGAGAACAAAAGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTGTCTAGACTTGCAGGCTAGAGCCCATAGTGAGAACAAAAGAG  833

seq1  GGACTGGCCTGCGGGCTGTCCCCTCTCTGCAGGAAAGACTGGGGAGTACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCCTGCGGGCTGTCCCCTCTCTGCAGGAAAGACTGGGGAGTACC  883

seq1  TACCAATACAGTTTTTTTCTGTGGGGCCATTCGTAAAAGACTACCATCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATACAGTTTTTTTCTGTGGGGCCATTCGTAAAAGACTACCATCAT  933

seq1  TTTATTCTGCTGTGAAGAAAGTAAAAAGGTTACTAGGTTTGTGGCAAGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGCTGTGAAGAAAGTAAAAAGGTTACTAGGTTTGTGGCAAGTG  983

seq1  CCCAGGTGACAGACACATCCCAGATGCTGGTTTGCCTGGCTTCGGGTGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGACAGACACATCCCAGATGCTGGTTTGCCTGGCTTCGGGTGTT  1033

seq1  TGCTGTGGAACTATTACACAATAGCAAGTTATGTGTCTTATTCCATCTCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGAACTATTACACAATAGCAAGTTATGTGTCTTATTCCATCTCA  1083

seq1  AGACCTATCCATCAGCATAGTTTCTCTTTGCCCTGAAGGAAGTCAGTCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATCCATCAGCATAGTTTCTCTTTGCCCTGAAGGAAGTCAGTCTG  1133

seq1  AGCTCTGCGGTGCCAAGGCCCCCAGCAAAGTAGGAGTGCTATACACAGTA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCGGTGCCAAGGCCCCCAGCAAAGTAGGAGTGCTATACACAGTA  1183

seq1  AGCGGGACACTTTGTGGTCATTGATGAATTC  1227
      |||||||||||||||||||||||||||||||
seq2  AGCGGGACACTTTGTGGTCATTGATGAATTC  1214

seq1: chr12_90277217_90278288
seq2: B6Ng01-333C18.g_69_1126

seq1  GAATTCATAGGCTTTTTACATGTGACTAAGAACAGGCTGAAGACTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGCTTTTTACATGTGACTAAGAACAGGCTGAAGACTGGGTT  50

seq1  TCTCTATTTAGTTGAGTCTCTATAACCTTCTATTTCTAGTCAATGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTAGTTGAGTCTCTATAACCTTCTATTTCTAGTCAATGCCATG  100

seq1  GTCTGTGTAACTTTCTGAATACACCCAGTACTGCCTGGCTTTAGATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTAACTTTCTGAATACACCCAGTACTGCCTGGCTTTAGATTTGT  150

seq1  GGTGTGAATTCTTTCCATCATTAAAATATTCACATTTCTGTTTCTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAATTCTTTCCATCATTAAAATATTCACATTTCTGTTTCTCTGGT  200

seq1  TCCTTAAATGACTTTTTCCCATAAAGAATCTGGATGATACTTTTGGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAATGACTTTTTCCCATAAAGAATCTGGATGATACTTTTGGAGTG  250

seq1  TGATTTTTAAATCACTCTCACTTGTGCTCTGAAGAATTCCTTTTGGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAATCACTCTCACTTGTGCTCTGAAGAATTCCTTTTGGTACT  300

seq1  CATTTACTTTATCGTTCTCGGTCTTAGGGTAGAGTCAATCCTGGCTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTTATCGTTCTCGGTCTTAGGGTAGAGTCAATCCTGGCTTCAT  350

seq1  AGATGCTTAGGACACAGGCTATTCTTGATATTATTTATTTACTTCTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTAGGACACAGGCTATTCTTGATATTATTTATTTACTTCTGGGC  400

seq1  TGTGTTGGCTCATGAAAAACAAGTAGAAAATACATTTGTTAGATGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGCTCATGAAAAACAAGTAGAAAATACATTTGTTAGATGTCTGT  450

seq1  CATTTTGTTTTTTGTTTAACAAAACATTTGTCCTTAAATTTAATGATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTTTTTGTTTAACAAAACATTTGTCCTTAAATTTAATGATTAT  500

seq1  GTTATTGCTAGATATTTGATATTTCTGCAATATTTGAAATGTGAGATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTAGATATTTGATATTTCTGCAATATTTGAAATGTGAGATAAA  550

seq1  AAGGCAAATACAGAGGACCTGTGTTTGATTACTAGCACCCACATAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAATACAGAGGACCTGTGTTTGATTACTAGCACCCACATAATGGA  600

seq1  AACAACTGTCTGTCATTTCAGTTCCAGGGGATTAAATATGTCTTCTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGTCTGTCATTTCAGTTCCAGGGGATTAAATATGTCTTCTAGAC  650

seq1  TCTGGGTTCCATGCATACATGTGATGAACAGGCACATACACGAACAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTCCATGCATACATGTGATGAACAGGCACATACACGAACAACCC  700

seq1  CCCACCCCCGTGCCCATGCACACAAAATAAAATATATACTTAAAAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCGTGCCCATGCACACAAAATAAAATATATACTTAAAAAAGAG  750

seq1  AAAGAGAAATAAAGAGACCGGCCTCCGTGATCTGAAACTCTTTGAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATAAAGAGACCGGCCTCCGTGATCTGAAACTCTTTGAATTCT  800

seq1  AGAGATATCTGAAAGTCTGCATTTTGTTTTCTTTGTGGTATCTCAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATCTGAAAGTCTGCATTTTGTTTTCTTTGTGGTATCTCAGAAAT  850

seq1  CAGAGAATGATTTCATAATGACAGTAAAAACACGTGTTAAAGGAATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATGATTTCATAATGACAGTAAAAACACGTGTTAAAGGAATCATG  900

seq1  AATCTGCACATTTTTTTCTTCATGCTGTAGAGGGCAACGTGATTATCATC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATCTGCACATTTTTTTCTTCATGCTGTAGAGGGCAACGTGA-TATCATC  949

seq1  GCTAACAACCCTGAAGAAAGAATTAGAAGTAGGATGAGAGAGTCAACATT  1000
      ||||   |||||| ||||||||||||||||| |||||||||||| |||||
seq2  GCTA--CACCCTG-AGAAAGAATTAGAAGTA-GATGAGAGAGTC-ACATT  994

seq1  TGAAGGAAAGTTGCCATATTGGGTAGAGGCAAAGGAGAGTATATAACAAA  1050
      || ||||||| |||||||||||||||||   ||||||||||||||   ||
seq2  TG-AGGAAAG-TGCCATATTGGGTAGAG--CAAGGAGAGTATATA--CAA  1038

seq1  GATGGAGGAGTGTAAGGGAAAG  1072
      ||||||||||||||  ||||||
seq2  GATGGAGGAGTGTA--GGAAAG  1058