BAC Information

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BAC

Clone NameB6Ng01-333G18
Chromosome12 (Build37)
Map Location 6,906,945 - 7,047,068
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333G18.bB6Ng01-333G18.g
ACCGA119229GA119230
length1,1371,059
definitionB6Ng01-333G18.b B6Ng01-333G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,045,913 - 7,047,068)(6,906,945 - 6,908,014)
sequence
gaattcctactatggtatcaaaagcaggagaaaaattcaattttattctt
ctttacaaatccatttatctgtagcactatggaaaacaatgaagtgctct
attaaggcggataaatctgggtgtcccttggagataatagaacctcaagg
ggaaatagaattgggcaagaaaatgggatcacttttatatccaaaattta
aaatggctagctaaagggtaaccagttgttataatgccgagattcttaat
aaagcctattgaggcaatcttcaatgtcttagggagttaatctgagctgt
gggcatctcattaataggaagataagaaagtatccaccaagcaacatgtc
tacttgtcaggcaaagtgattccactagaagctttacctaatagccatat
aaactcatagcacacagacacgggaaaatattaagtgttgggagagcagt
gattaaagaatgtaaggtgcaaagtacagaaggctggacagctccgcaaa
gacaatactaaggggaataaagcatgctatgtttaagatacaacttgaat
ttgtatatctcagaatcccattaacaagaaaacaagaagacatctgcaaa
gcagtccttttatttctcaactcgaatgtctatttgtatgtatgtgtgtg
taatataatacgtgctatgctatacacacacacacacacacacacacaca
cacacacatatacacacacaaacatatgtacaaatactacatatatagta
tatattccacaaggtatgaaaaggcagagaaggcatagtatttacaagca
ggttaattactaggttatgttaattctatgctacctgtatcccaccctct
tctctgaccaagtagccacctttgtgacagtagaacacaggatgctgatg
tgagctataatgcccatccaaatgtcatctctttttttttttccgtatca
ttattttttttctttctttttttttaattaggtattttcctcgtttacat
tttcatgctaatccaaagtccccatactacccccccatccctaccaccac
tcccctttatgctgcattcctgtactgagcatataaggtttgcaagtcaa
tgggactctctttgcagtgatgcgactaggcatcttt

gaattctcccatggggcccttctcgtccttcattttcttaccatctatct
agttctccaatgatacatttctctctataatatcaataccgtactaaaaa
aatgttcttaaaaagagggatttagaaaagtcgttctgtcatacagaaaa
aaaaaaaaaaaaacaaacccacaggacaaaatatatatgttagaaaccct
gaaacaggagtaactcaagtctgtcaaagctgcatatagggaaaacaaaa
caaaacaaaacaaaaaacccaaaaatatactgctgtgcagtgacagagaa
cattttcagatggtcaatctattgctgcattgaagaaaagtgattgaaaa
tgataaattggtcattcgtaaccataattttcctgaaaaaagagtctaca
agttgaaaacagtttatccttaatttgagtgcccatctttaatgttcaaa
caaaatgtgataaatgtaaatatcatttggaagttgaacgtgggggtgtt
tcattgagggcatacacactcttctatttctttctttccatcttgctatt
cttctctgatttgtatgctaaaaggtggaaaatctggatttttatgcaaa
taaactccaacagatgattctctgttgttatagttcaactaactccaatg
aaaagaatacttaatcatccactctagatgttgtctatgtttattctact
aaaatacatacttttcaaacactagagttctcttgtcacatctgaccata
gtccccagatactgaccgtttcatgtgttattttatgcctacttactgat
ttgtaaattcttgattctacattgtgcgtattaaaaaaaaaaagctctat
ttctaaaagaccagatagattacatagactgtattgtacaatatagaaaa
actaaaagaatggctttaaaaaggagaagcatagtatagtaaaataatgg
tcattctactcaataaataattgatatatgaaactcagtgctgcatgtaa
gaaattatagtagaaaaataagtagagtacatgctgtgagatataagatg
cattaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7045913_7047068
seq2: B6Ng01-333G18.b_48_1184 (reverse)

seq1  AAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGC  50
      |||||| |||||||||  ||||||||||||||||| |||||| |||||||
seq2  AAAGAT-GCCTAGTCG--CATCACTGCAAAGAGAGTCCCATT-GACTTGC  46

seq1  AAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCATAAAGGGGGAG  100
      |||| ||||||| | |||||||  |||||| |||   |||||| ||||||
seq2  AAACCTTATATG-CTCAGTACA--GGAATG-CAG---CATAAA-GGGGAG  88

seq1  TGGGTGGGTAGGGGATTGGGGGGGTAGGTATGGGGGACCTTTGGGATAGC  150
      |||   |||||||   |||||||||| ||||||||   ||||||  ||||
seq2  TGG--TGGTAGGG--ATGGGGGGGTA-GTATGGGG--ACTTTGGATTAGC  131

seq1  ATTGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAAAGAAAGAAAA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGAAAATGTAAACGAGGAAAATACCTAATTAAAAAAAAAGAAAGAAAA  180

seq1  AAAATAATGATACGG-AAAAAAAAAAGAGATGACATTTGGATGGGCATTA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAATAATGATACGGAAAAAAAAAAAGAGATGACATTTGGATGGGCATTA  230

seq1  TAGCTCACATCAGCATCCTGTGTTCTACTGTCACAAAGGTGGCTACTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCACATCAGCATCCTGTGTTCTACTGTCACAAAGGTGGCTACTTGG  280

seq1  TCAGAGAAGAGGGTGGGATACAGGTAGCATAGAATTAACATAACCTAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAGAGGGTGGGATACAGGTAGCATAGAATTAACATAACCTAGTA  330

seq1  ATTAACCTGCTTGTAAATACTATGCCTTCTCTGCCTTTTCATACCTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCTGCTTGTAAATACTATGCCTTCTCTGCCTTTTCATACCTTGTG  380

seq1  GAATATATACTATATATGTAGTATTTGTACATATGTTTGTGTGTGTATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATACTATATATGTAGTATTTGTACATATGTTTGTGTGTGTATAT  430

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCATAGCACGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGCATAGCACGTAT  480

seq1  TATATTACACACACATACATACAAATAGACATTCGAGTTGAGAAATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACACACACATACATACAAATAGACATTCGAGTTGAGAAATAAAA  530

seq1  GGACTGCTTTGCAGATGTCTTCTTGTTTTCTTGTTAATGGGATTCTGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTTGCAGATGTCTTCTTGTTTTCTTGTTAATGGGATTCTGAGA  580

seq1  TATACAAATTCAAGTTGTATCTTAAACATAGCATGCTTTATTCCCCTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAATTCAAGTTGTATCTTAAACATAGCATGCTTTATTCCCCTTAG  630

seq1  TATTGTCTTTGCGGAGCTGTCCAGCCTTCTGTACTTTGCACCTTACATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTTGCGGAGCTGTCCAGCCTTCTGTACTTTGCACCTTACATTC  680

seq1  TTTAATCACTGCTCTCCCAACACTTAATATTTTCCCGTGTCTGTGTGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCACTGCTCTCCCAACACTTAATATTTTCCCGTGTCTGTGTGCTA  730

seq1  TGAGTTTATATGGCTATTAGGTAAAGCTTCTAGTGGAATCACTTTGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTATATGGCTATTAGGTAAAGCTTCTAGTGGAATCACTTTGCCTG  780

seq1  ACAAGTAGACATGTTGCTTGGTGGATACTTTCTTATCTTCCTATTAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGACATGTTGCTTGGTGGATACTTTCTTATCTTCCTATTAATGA  830

seq1  GATGCCCACAGCTCAGATTAACTCCCTAAGACATTGAAGATTGCCTCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCACAGCTCAGATTAACTCCCTAAGACATTGAAGATTGCCTCAAT  880

seq1  AGGCTTTATTAAGAATCTCGGCATTATAACAACTGGTTACCCTTTAGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTATTAAGAATCTCGGCATTATAACAACTGGTTACCCTTTAGCTA  930

seq1  GCCATTTTAAATTTTGGATATAAAAGTGATCCCATTTTCTTGCCCAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTAAATTTTGGATATAAAAGTGATCCCATTTTCTTGCCCAATTC  980

seq1  TATTTCCCCTTGAGGTTCTATTATCTCCAAGGGACACCCAGATTTATCCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCTTGAGGTTCTATTATCTCCAAGGGACACCCAGATTTATCCG  1030

seq1  CCTTAATAGAGCACTTCATTGTTTTCCATAGTGCTACAGATAAATGGATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATAGAGCACTTCATTGTTTTCCATAGTGCTACAGATAAATGGATT  1080

seq1  TGTAAAGAAGAATAAAATTGAATTTTTCTCCTGCTTTTGATACCATAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAAGAATAAAATTGAATTTTTCTCCTGCTTTTGATACCATAGTA  1130

seq1  GGAATTC  1156
      |||||||
seq2  GGAATTC  1137


seq1: chr12_6906945_6908014
seq2: B6Ng01-333G18.g_63_1121

seq1  GAATTCTCCCATGGGGCCCTTCTCGTCCTTCATTTTCTTACCATCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATGGGGCCCTTCTCGTCCTTCATTTTCTTACCATCTATCT  50

seq1  AGTTCTCCAATGATACATTTCTCTCTATAATATCAATACCGTACTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCCAATGATACATTTCTCTCTATAATATCAATACCGTACTAAAAA  100

seq1  AATGTTCTTAAAAAGAGGGATTTAGAAAAGTCGTTCTGTCATACAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTAAAAAGAGGGATTTAGAAAAGTCGTTCTGTCATACAGAAAA  150

seq1  AAAAAAAAAAAAACAAACCCACAGGACAAAATATATATGTTAGAAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACAAACCCACAGGACAAAATATATATGTTAGAAACCCT  200

seq1  GAAACAGGAGTAACTCAAGTCTGTCAAAGCTGCATATAGGGAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGAGTAACTCAAGTCTGTCAAAGCTGCATATAGGGAAAACAAAA  250

seq1  CAAAACAAAACAAAAAACCCAAAAATATACTGCTGTGCAGTGACAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAAAACCCAAAAATATACTGCTGTGCAGTGACAGAGAA  300

seq1  CATTTTCAGATGGTCAATCTATTGCTGCATTGAAGAAAAGTGATTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGATGGTCAATCTATTGCTGCATTGAAGAAAAGTGATTGAAAA  350

seq1  TGATAAATTGGTCATTCGTAACCATAATTTTCCTGAAAAAAGAGTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATTGGTCATTCGTAACCATAATTTTCCTGAAAAAAGAGTCTACA  400

seq1  AGTTGAAAACAGTTTATCCTTAATTTGAGTGCCCATCTTTAATGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAAACAGTTTATCCTTAATTTGAGTGCCCATCTTTAATGTTCAAA  450

seq1  CAAAATGTGATAAATGTAAATATCATTTGGAAGTTGAACGTGGGGGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTGATAAATGTAAATATCATTTGGAAGTTGAACGTGGGGGTGTT  500

seq1  TCATTGAGGGCATACACACTCTTCTATTTCTTTCTTTCCATCTTGCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGGGCATACACACTCTTCTATTTCTTTCTTTCCATCTTGCTATT  550

seq1  CTTCTCTGATTTGTATGCTAAAAGGTGGAAAATCTGGATTTTTATGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGATTTGTATGCTAAAAGGTGGAAAATCTGGATTTTTATGCAAA  600

seq1  TAAACTCCAACAGATGATTCTCTGTTGTTATAGTTCAACTAACTCCAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCAACAGATGATTCTCTGTTGTTATAGTTCAACTAACTCCAATG  650

seq1  AAAAGAATACTTAATCATCCACTCTAGATGTTGTCTATGTTTATTCTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATACTTAATCATCCACTCTAGATGTTGTCTATGTTTATTCTACT  700

seq1  AAAATACATACTTTTCAAACACTAGAGTTCTCTTGTCACATCTGACCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATACTTTTCAAACACTAGAGTTCTCTTGTCACATCTGACCATA  750

seq1  GTCCCCAGATACTGACCGTTTCATGTGTTATTTTATGCCTACTTACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAGATACTGACCGTTTCATGTGTTATTTTATGCCTACTTACTGAT  800

seq1  TTGTAAATTCTTGATTCTACATTGTGCGTATT-AAAAAAAAAAGCTCTAT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTAAATTCTTGATTCTACATTGTGCGTATTAAAAAAAAAAAGCTCTAT  850

seq1  TTCTAAAAGACCAGATAGATTACATAGACTGTATTGTACAATATAGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGACCAGATAGATTACATAGACTGTATTGTACAATATAGAAAA  900

seq1  ACTAAAAGAATGGCTTTAAAAAGGAGAAGCATAGTATAGTAAAATAATGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGAATGGCTTTAAAAAGGAGAAGCATAGTATAGTAAAATAATGG  950

seq1  TCATTCTACTCAATAAATAATTGAATATATGAAACTCAGTGGCTGCATGT  999
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TCATTCTACTCAATAAATAATTG-ATATATGAAACTCAGT-GCTGCATGT  998

seq1  AAAGAAATTATAGTAAGAAAAAATAAAGTAGAAGTACATGCCTGTGAGAT  1049
       ||||||||||||| |||||||   |||||| |||||||| |||||||| 
seq2  -AAGAAATTATAGT-AGAAAAA--TAAGTAG-AGTACATG-CTGTGAGA-  1041

seq1  TATAAAGAATGCATTATATAT  1070
      |||||   |||||||| ||||
seq2  TATAA--GATGCATTA-ATAT  1059


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