BAC Information

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BAC

Clone NameB6Ng01-334C17
Chromosome12 (Build37)
Map Location 6,705,243 - 6,882,169
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C17.bB6Ng01-334C17.g
ACCGA119740GA119741
length7331,006
definitionB6Ng01-334C17.b B6Ng01-334C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,705,243 - 6,705,979)(6,881,190 - 6,882,169)
sequence
gaattcaaaagtttgctgcattgcatcctgatgatgcagaaagatggagc
agggagataagtaacttttttttttttttttggtttttggttcttggttt
ttcaagatagggtttctctgtatagccctggctctcctggaacttactct
gtagaccaggctggccttgaactcagaaatccatctacctctgcctccca
agcacgagaattaaaggtgcattccaccaatgcccagcaatgaggaacat
cttattttgaagacattttacaaggtgtattttgaagttcagccatttga
aaggcagaaaaataaacacaggaagcatatggtgttaagtatgctaactt
tagactgctagagtggcaaaaaacatatttggaaattttctgttcaagaa
attaaatttgtaatgttaacattaatacctaaaaagtaatactatggttt
ccatcattagaaatatttttatagctctagacatttactattaagtattt
tgcaaaacagtcatataatattctctaatactagtaaacaggtatagggt
gatgacatatattgtttcatcacccatgacatactataattagcacctta
ggtcttcttaaacttccttccttcttcctttcttcctttcttttccttcc
ttctttccttccttccttccttccttccatacatccttccttccttcctt
cctccctccctccatccctccctccctctttcc

gaattcaggtggatagagagggtagggttggtatacaggatgtggtccct
ggttcaaaccttgagtaccactctagctggcagaatggaaatattggata
tgccatgcaaggggcctgtgagttcccacatacgtggaattgctcctggc
agaagcctagagatttgttggggcataagtacaagtggctagatgaggct
tcagaactggatgtggaagccagtgtatatcgcagattgggtatgtagca
tagaagaaagttcagagagactaattggactagaccctggagaggatgtg
gagatttgtctcaggagagagatttgacatggtgctgcaatgttgatttt
taaaacatgattattattattatctatactttcttcatattcatgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgttactctaccatggagaccagaggtgt
atgcactatttttttgtatctagagttaacaggcagttgtgggctgctgg
atataggaccggggcatcaaacttagtttttctacaagaacaagacacca
ttaacaatcaaaccttatgagaaataagtcaaggcatgtcaaaggttaga
tgtgagattttaaaatattaaataactaaaatatatatgaatccaagtgt
aatttgtctagacaataacttttgttaaaataaccccaaagacacaggaa
ctgaaactgcagacagacaaatgagattgtatgaaaactacatattttca
tattaaaggtaaattatcaacaagattaagagaaaaaagaatagaatgca
aaaataacatttgaaagctgtgcatttgataacagatgaatgtataaaat
attataagaaatgcaagtttgtactaaatttatcagaaagtttggagatc
aaaagttggcaaagcatttaagaatagactgagaaaaagccaactgggga
catgagacagcaaagtactcatatttctcataattagataaattctgggt
ttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_6705243_6705979
seq2: B6Ng01-334C17.b_48_780

seq1  GAATTCAAAAGTTTGCTGCATTGCATCCTGATGATGCAGAAAGATGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTTTGCTGCATTGCATCCTGATGATGCAGAAAGATGGAGC  50

seq1  AGGGAGATAAGTAACTTTTTTTTTTTTTTTTGGTTTTTGGTTCTTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATAAGTAACTTTTTTTTTTTTTTTTGGTTTTTGGTTCTTGGTTT  100

seq1  TTCAAGATAGGGTTTCTCTGTATAGCCCTGGCTCTCCTGGAACTTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATAGGGTTTCTCTGTATAGCCCTGGCTCTCCTGGAACTTACTCT  150

seq1  GTAGACCAGGCTGGCCTTGAACTCAGAAATCCATCTACCTCTGCCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTTGAACTCAGAAATCCATCTACCTCTGCCTCCCA  200

seq1  AGCACGAGAATTAAAGGTGCATTCCACCAATGCCCAGCAATGAGGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAGAATTAAAGGTGCATTCCACCAATGCCCAGCAATGAGGAACAT  250

seq1  CTTATTTTGAAGACATTTTACAAGGTGTATTTTGAAGTTCAGCCATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGAAGACATTTTACAAGGTGTATTTTGAAGTTCAGCCATTTGA  300

seq1  AAGGCAGAAAAATAAACACAGGAAGCATATGGTGTTAAGTATGCTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAAAATAAACACAGGAAGCATATGGTGTTAAGTATGCTAACTT  350

seq1  TAGACTGCTAGAGTGGCAAAAAACATATTTGGAAATTTTCTGTTCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCTAGAGTGGCAAAAAACATATTTGGAAATTTTCTGTTCAAGAA  400

seq1  ATTAAATTTGTAATGTTAACATTAATACCTAAAAAGTAATACTATGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTGTAATGTTAACATTAATACCTAAAAAGTAATACTATGGTTT  450

seq1  CCATCATTAGAAATATTTTTATAGCTCTAGACATTTACTATTAAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTAGAAATATTTTTATAGCTCTAGACATTTACTATTAAGTATTT  500

seq1  TGCAAAACAGTCATATAATATTCTCTAATACTAGTAAACAGGTATAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACAGTCATATAATATTCTCTAATACTAGTAAACAGGTATAGGGT  550

seq1  GATGACATATATTGTTTCATCACCCATGACATACTATAATTAGCACCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATATATTGTTTCATCACCCATGACATACTATAATTAGCACCTTA  600

seq1  GGTCTTCTTAAACTTCCTTCCTTCTTCCTTTCTTCCTTTCTTTTCCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTTAAACTTCCTTCCTTCTTCCTTTCTTCCTTTCTTTTCCTTCC  650

seq1  TTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  700
      ||||    |||||||||||||||||||||||| | | |||||||||||||
seq2  TTCT----TTCCTTCCTTCCTTCCTTCCTTCCATACATCCTTCCTTCCTT  696

seq1  CCTTCCTCCCTCCCTCCATCCCTCCCTCCCTCTTTCC  737
      |||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCTCCCTCCATCCCTCCCTCCCTCTTTCC  733


seq1: chr12_6881190_6882169
seq2: B6Ng01-334C17.g_66_1049 (reverse)

seq1  ATTATGAGAAATATTGAGTACTTTGCTGTCTCATGT-CCCAGTTGGCTTT  49
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  ATTATGAGAAATA-TGAGTACTTTGCTGTCTCATGTCCCCAGTTGGCTTT  49

seq1  TTCTCAGTCTATTCTT-AATGCTTTGCCAACTTTTGATCTCCAAACTTTC  98
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCTATTCTTAAATGCTTTGCCAACTTTTGATCTCCAAACTTTC  99

seq1  TGATAAATTTAGTACAAACTTGCATTTCTTAT-ATATTTTATACATTCAT  147
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATAAATTTAGTACAAACTTGCATTTCTTATAATATTTTATACATTCAT  149

seq1  CTGTTATCAAATGCACAGCTTTCAAATGTTATTTTTGCATTCTATTCTTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCAAATGCACAGCTTTCAAATGTTATTTTTGCATTCTATTCTTT  199

seq1  TTTCTCTTAATCTTGTTGATAA-TTACCTTTAATATGAAAATATGTAG-T  245
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  TTTCTCTTAATCTTGTTGATAATTTACCTTTAATATGAAAATATGTAGTT  249

seq1  TTCATACAATCTCATTTGTCTGTCTGCAGTTTCAGTTCCTGTGTCTTTGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAATCTCATTTGTCTGTCTGCAGTTTCAGTTCCTGTGTCTTTGG  299

seq1  GGTTATTTTAACAAAAGTTATTGTCTAGACAAATTACACTTGGATTCATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTAACAAAAGTTATTGTCTAGACAAATTACACTTGGATTCATA  349

seq1  TATATTTTAGTTATTTAATATTTTAAAATCTCACATCTAACCTTTGACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAGTTATTTAATATTTTAAAATCTCACATCTAACCTTTGACAT  399

seq1  GCCTTGACTTATTTCTCATAAGGTTTGATTGTTAATGGTGTCTTGTTCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACTTATTTCTCATAAGGTTTGATTGTTAATGGTGTCTTGTTCTT  449

seq1  GTAGAAAAACTAAGTTTGATGCCCCGGTCCTATATCCAGCAGCCCACAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAACTAAGTTTGATGCCCCGGTCCTATATCCAGCAGCCCACAAC  499

seq1  TGCCTGTTAACTCTAGATACAAAAAAATAGTGCATACACCTCTGGTCTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTAACTCTAGATACAAAAAAATAGTGCATACACCTCTGGTCTCC  549

seq1  ATGGTAGAGTAACACACACACACACACACACACACACACACATGAATATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAGTAACACACACACACACACACACACACACACACATGAATATG  599

seq1  AAGAAAGTATAGATAATAATAATAATCATGTTTTAAAAATCAACATTGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTATAGATAATAATAATAATCATGTTTTAAAAATCAACATTGCA  649

seq1  GCACCATGTCAAATCTCTCTCCTGAGACAAATCTCCACATCCTCTCCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGTCAAATCTCTCTCCTGAGACAAATCTCCACATCCTCTCCAGG  699

seq1  GTCTAGTCCAATTAGTCTCTCTGAACTTTCTTCTATGCTACATACCCAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTCCAATTAGTCTCTCTGAACTTTCTTCTATGCTACATACCCAAT  749

seq1  CTGCGATATACACTGGCTTCCACATCCAGTTCTGAAGCCTCATCTAGCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATATACACTGGCTTCCACATCCAGTTCTGAAGCCTCATCTAGCCA  799

seq1  CTTGTACTTATGCCCCAACAAATCTCTAGGCTTCTGCCAGGAGCAATTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACTTATGCCCCAACAAATCTCTAGGCTTCTGCCAGGAGCAATTCC  849

seq1  ACGTATGTGGGAACTCACAGGCCCCTTGCATGGCATATCCAATATTTCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGTGGGAACTCACAGGCCCCTTGCATGGCATATCCAATATTTCCA  899

seq1  TTCTGCCAGCTAGAGTGGTACTCAAGGTTTGAACCAGGGACCACATCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGCTAGAGTGGTACTCAAGGTTTGAACCAGGGACCACATCCTG  949

seq1  TATACCAACCCTACCCTCTCTATCCACCTGAATTC  980
      |||||||||||||||||||||||||||||||||||
seq2  TATACCAACCCTACCCTCTCTATCCACCTGAATTC  984


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