BAC Information

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BAC

Clone NameB6Ng01-335A17
Chromosome12 (Build37)
Map Location 33,687,248 - 33,806,041
singlet/doubletdoublet
Overlap geneLOC100043109, 1110049B09Rik
Upstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl
Downstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335A17.bB6Ng01-335A17.g
ACCGA120395GA120396
length7121,130
definitionB6Ng01-335A17.b B6Ng01-335A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,805,342 - 33,806,041)(33,687,248 - 33,688,377)
sequence
gaattccagagtttgtaaaagccttacaaacagcacagattctaacttga
cacagaccggtgactcttccagctttgggactcaaacaatacccctttcc
tcattcttcttcagatgcaagtccctgatgtttgtaagctgcctgagggc
acattgtgaaaatcaatacttacaggttttttggtttttttttttttttg
aagcaatgagttattcaaccaatcccacttcccaatatgttttctgtttt
tctaatagcagaaggttttgttttgcttgtttgtttccaaagtaaactaa
ataatactttatttcatgtttgctggctgccttagggggctgtgcacacg
agagacgtatgaagattttcactgggtgaacagacatcttcccacattgc
taagtcatcactgttctcgtccagtgtctctctgcacccccattttattt
cctgcctatgccaagatcacaggaaaagctatttgtacagtgcattggaa
gaaaataaactcttgtaattaaaagcaacaacaacaaactaaaacaaaca
ctagtggacagttggagagacagcagaactctgctttcccagaggagcaa
agtttggttcctacaatggatggggtcacaacctcttgtgtcttcaggga
ctcttctttctggcctccacagagagacacttttacagacacacacactc
acccacacacac
gaattcacttttttttttcctgtcttgagtagcttgtctctaccaaggct
gaagatttcattctcttgagtagaatgaaccagttttcccttaatgttct
gtcagacagacaagaagttgctctggttggaggctcggggttggttctag
tagacagcaacttcagggaaggagtcaggagagccagaatgggatgctca
gtatgggtgaccacaaagtcaggcgccccaggagcagagattccgtccat
tcctgtgaacagtggggacacgtctaataaaatgctaactccgggggccc
tggacaaagggaaagggcttggattgctagtctgccctatagcgtggaag
ctttgaggagagtgaaagcagctgctggctgggccagtgggcttggcatc
cgtgggccacacaaatgctggaggaagaggggcagcccaggctcggcgcc
ctgaggtctgtcccttagctggccagaaccacaggccccacccttcgatg
cctgatgatggaggtagagggagattcttgactgagtgaagagtccaccc
ttgactgagctaaatagcctcttcaacatgagcatgaatgtcaggctaaa
tcgataggtggagtagttaaagagatgctgcactttctatcccagaattc
cctcccatgagtacagtccccagtgggaagctgtgaggtttggttggatc
tgtcgctattggcatgggaccctctgacctccaaggggttgagatgcagt
gacacacggctcttccggtccaatgaacccaacctttgcagccagagtgg
ctgccaggccatcaaaatgctcatcatggctcttagtccaggctccccac
tggccttagagtgtgatggggaaatgaagtgtgggttttcctggtcctat
actctctgagcttactccaactccacaaacccagaaccaatgagagactg
agcttctcagtctctcattcctccgagttatagggctgggacatgtactt
gggaagtactgatggcaggcttagcatgagccttgtcaaggactaggatt
tggggcttccaacaaatccgagtttcatgttagctggtgctgctgcctgt
cgttctggcaagccagatagatgccgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33805342_33806041
seq2: B6Ng01-335A17.b_43_754 (reverse)

seq1  ----GTGTGTGTGTGTGTGTGTGT------AAGTGTCTCTCTGTGGAGGC  40
          ||||| ||| ||||||||||      ||||||||||||||||||||
seq2  GTGTGTGTGGGTGAGTGTGTGTGTCTGTAAAAGTGTCTCTCTGTGGAGGC  50

seq1  CAG-AAGAAGAGTCCCTGAAGACACAAGAGGTTGTGA-CCCATCCATTGT  88
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGAAAGAAGAGTCCCTGAAGACACAAGAGGTTGTGACCCCATCCATTGT  100

seq1  AGGAACCAAACTTTGCTCCTCTGGGAAAGCAGAGTTCTGCTGTCTCTCCA  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAAACTTTGCTCCTCTGGGAAAGCAGAGTTCTGCTGTCTCTCCA  150

seq1  ACTGTCCACTAGTGTTTGTTTTAGTTTGTTGTTGTTGCTTTTAATTACAA  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCACTAGTGTTTGTTTTAGTTTGTTGTTGTTGCTTTTAATTACAA  200

seq1  GAGTTTATTTTCTTCCAATGCACTGTACAAATAGCTTTTCCTGTGATCTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTTTCTTCCAATGCACTGTACAAATAGCTTTTCCTGTGATCTT  250

seq1  GGCATAGGCAGGAAATAAAATGGGGGTGCAGAGAGACACTGGACGAGAAC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGGCAGGAAATAAAATGGGGGTGCAGAGAGACACTGGACGAGAAC  300

seq1  AGTGATGACTTAGCAATGTGGGAAGATGTCTGTTCACCCAGTGAAAATCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGACTTAGCAATGTGGGAAGATGTCTGTTCACCCAGTGAAAATCT  350

seq1  TCATACGTCTCTCGTGTGCACAGCCCCCTAAGGCAGCCAGCAAACATGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACGTCTCTCGTGTGCACAGCCCCCTAAGGCAGCCAGCAAACATGAA  400

seq1  ATAAAGTATTATTTAGTTTACTTTGGAAACAAACAAGCAAAACAAAACCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATTATTTAGTTTACTTTGGAAACAAACAAGCAAAACAAAACCT  450

seq1  TCTGCTATTAGAAAAACAGAAAACATATTGGGAAGTGGGATTGGTTGAAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATTAGAAAAACAGAAAACATATTGGGAAGTGGGATTGGTTGAAT  500

seq1  AACTCATTGCTTCAAAAAAAAAAAAAAACCAAAAAACCTGTAAGTATTGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTGCTTCAAAAAAAAAAAAAAACCAAAAAACCTGTAAGTATTGA  550

seq1  TTTTCACAATGTGCCCTCAGGCAGCTTACAAACATCAGGGACTTGCATCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAATGTGCCCTCAGGCAGCTTACAAACATCAGGGACTTGCATCT  600

seq1  GAAGAAGAATGAGGAAAGGGGTATTGTTTGAGTCCCAAAGCTGGAAGAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAATGAGGAAAGGGGTATTGTTTGAGTCCCAAAGCTGGAAGAGT  650

seq1  CACCGGTCTGTGTCAAGTTAGAATCTGTGCTGTTTGTAAGGCTTTTACAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGTCTGTGTCAAGTTAGAATCTGTGCTGTTTGTAAGGCTTTTACAA  700

seq1  ACTCTGGAATTC  700
      ||||||||||||
seq2  ACTCTGGAATTC  712

seq1: chr12_33687248_33688377
seq2: B6Ng01-335A17.g_65_1194

seq1  GAATTCACTTTTTTTTTTCCTGTCTTGAGTAGCTTGTCTCTACCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTTTTTTCCTGTCTTGAGTAGCTTGTCTCTACCAAGGCT  50

seq1  GAAGATTTCATTCTCTTGAGTAGAATGAACCAGTTTTCCCTTAATGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCATTCTCTTGAGTAGAATGAACCAGTTTTCCCTTAATGTTCT  100

seq1  GTCAGACAGACAAGAAGTTGCTCTGGTTGGAGGCTCGGGGTTGGTTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACAGACAAGAAGTTGCTCTGGTTGGAGGCTCGGGGTTGGTTCTAG  150

seq1  TAGACAGCAACTTCAGGGAAGGAGTCAGGAGAGCCAGAATGGGATGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCAACTTCAGGGAAGGAGTCAGGAGAGCCAGAATGGGATGCTCA  200

seq1  GTATGGGTGACCACAAAGTCAGGCGCCCCAGGAGCAGAGATTCCGTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTGACCACAAAGTCAGGCGCCCCAGGAGCAGAGATTCCGTCCAT  250

seq1  TCCTGTGAACAGTGGGGACACGTCTAATAAAATGCTAACTCCGGGGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAACAGTGGGGACACGTCTAATAAAATGCTAACTCCGGGGGCCC  300

seq1  TGGACAAAGGGAAAGGGCTTGGATTGCTAGTCTGCCCTATAGCGTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAGGGAAAGGGCTTGGATTGCTAGTCTGCCCTATAGCGTGGAAG  350

seq1  CTTTGAGGAGAGTGAAAGCAGCTGCTGGCTGGGCCAGTGGGCTTGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGAGAGTGAAAGCAGCTGCTGGCTGGGCCAGTGGGCTTGGCATC  400

seq1  CGTGGGCCACACAAATGCTGGAGGAAGAGGGGCAGCCCAGGCTCGGCGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCCACACAAATGCTGGAGGAAGAGGGGCAGCCCAGGCTCGGCGCC  450

seq1  CTGAGGTCTGTCCCTTAGCTGGCCAGAACCACAGGCCCCACCCTTCGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTGTCCCTTAGCTGGCCAGAACCACAGGCCCCACCCTTCGATG  500

seq1  CCTGATGATGGAGGTAGAGGGAGATTCTTGACTGAGTGAAGAGTCCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATGGAGGTAGAGGGAGATTCTTGACTGAGTGAAGAGTCCACCC  550

seq1  TTGACTGAGCTAAATAGCCTCTTCAACATGAGCATGAATGTCAGGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGAGCTAAATAGCCTCTTCAACATGAGCATGAATGTCAGGCTAAA  600

seq1  TCGATAGGTGGAGTAGTTAAAGAGATGCTGCACTTTCTATCCCAGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAGGTGGAGTAGTTAAAGAGATGCTGCACTTTCTATCCCAGAATTC  650

seq1  CCTCCCATGAGTACAGTCCCCAGTGGGAAGCTGTGAGGTTTGGTTGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATGAGTACAGTCCCCAGTGGGAAGCTGTGAGGTTTGGTTGGATC  700

seq1  TGTCGCTATTGGCATGGGACCCTCTGACCTCCAAGGGGTTGAGATGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTATTGGCATGGGACCCTCTGACCTCCAAGGGGTTGAGATGCAGT  750

seq1  GACACACGGCTCTTCCGGTCCAATGAACCCAACCTTTGCAGCCAGAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACGGCTCTTCCGGTCCAATGAACCCAACCTTTGCAGCCAGAGTGG  800

seq1  CTGCCAGGCCATCAAAATGCTCATCATGGCTCTTAGTCCAGGCTCCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGCCATCAAAATGCTCATCATGGCTCTTAGTCCAGGCTCCCCAC  850

seq1  TGGCCTTAGAGTGTGATGGGGAAATGAAGTTGTGGGTTTTCCTGGTCCTA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGCCTTAGAGTGTGATGGGGAAATGAAG-TGTGGGTTTTCCTGGTCCTA  899

seq1  TACTCTCTGAGCTTACTCCAACTCCACAAACCCAGAACCAATGAGAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTGAGCTTACTCCAACTCCACAAACCCAGAACCAATGAGAGACT  949

seq1  GAGCTTCTCAGTCTCTCATTCCTCCGAAGTATAGGGCTGGGACATGTACT  1000
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAGCTTCTCAGTCTCTCATTCCTCCGAGTTATAGGGCTGGGACATGTACT  999

seq1  TGGGAAGTACTGATGGCAAGCTTAGCAATGAGCCTTGTCAAAGACTATGA  1050
      |||||||||||||||||| ||||||| |||||||||||||| ||||| ||
seq2  TGGGAAGTACTGATGGCAGGCTTAGC-ATGAGCCTTGTCAAGGACTAGGA  1048

seq1  TTT-GGGCTT-CAACAAATCCGAGTTCCAATGTAAGCT-GTGCTGCTGCC  1097
      ||| |||||| ||||||||||||||| | |||| |||| |||||||||||
seq2  TTTGGGGCTTCCAACAAATCCGAGTTTC-ATGTTAGCTGGTGCTGCTGCC  1097

seq1  TG-CTGTCTGCGAGGCAGAGATAGATGCCGAGAC  1130
      || |  ||||  | ||  ||||||||||||||||
seq2  TGTCGTTCTGGCAAGC-CAGATAGATGCCGAGAC  1130