BAC Information

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BAC

Clone NameB6Ng01-335P08
Chromosome12 (Build37)12 (Build37)
Map Location 23,278,500 - 23,279,04118,998,830 - 18,999,752
singlet/doubletsingletsinglet
Overlap geneEG668669
Upstream geneEG668496, LOC668653, EG432637, LOC668656, EG629133, EG668660, EG668662, LOC668664, 2410018L13Rik, LOC77114
Downstream geneEG668670, LOC668680, LOC100042895, LOC100043435, EG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335P08.bB6Ng01-335P08.g
ACCGA121027GA121028
length952926
definitionB6Ng01-335P08.b B6Ng01-335P08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,278,500 - 23,279,041)(18,998,830 - 18,999,752)
sequence
gaattcactttatagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctcctgagtgctgggattaaaggtgtgcgccaccacgcccggcct
gaagacatctgtgatcttaatagatcttcctttatgtttttcctggcttt
ttacctttgcagcttttagtattctttccttgaactgtatgttttgatta
ttacacaggaaagagactttattttatagtcccttctgtttggtgttttg
atgattcttgtgttttctttatgttaggaagtttttcttctaggatttgg
ttgtcaatactttctgagactttgagggaggattctccttcctctcttcc
taagtattcttatgtttagtccttttacagtgtcctggatttccgtgata
ttttatatcaggaagatttagacttaccgtttttttttttttttgtctga
tttacccattccttctattgcttattcaatgattgagatttttctccgta
tctctgttctctgggtgaactttgcctctgtagttcctttttgcagtcct
aaatttttatttccactatttcctaagatttagttttctttttttgcttc
tatttccacttttatgtattgaatagttttgtttacttcacccattggtg
tgttctttctacgctttgtttataggaattttggcttcctctactttttg
gtttgtgtgttcctggccttctttatggaatttatttgatttcctctaat
ttttgttctgttttcctggatttctctaagtgatttgatcatttcctctt
ttaggaactctgtcatctccatacattttggggtagagtgtttttcttgt
aatttagctttgttggaatatttaagaactttctttggacaatattaatg
agatcaggagtcaattagccagagagtgtgaataaatgctggtccttcta
ta

gaattctataagaaagaaggctgagcaagccatggggagcaagccaggaa
gtagcaagcctttcatggtctctgtatcagctcctgcctccaggtccctg
ccctgtttgagtcataccctcattgcttttgatgatgaactgttatatgg
aaactgtgagtgaataaaccatttcctccccaagttgcttgtggccatgg
tgtgtcatcagagcaatggaaaccctaactcagacaacagggatgaagcc
tacagctcagagggtctactgacaatgcccatggttatagagccctagga
agggtgcaggatgcaggctaggtgtacctggccctgaattctagtctccc
tccctcaatcagagctgaatcaagtgggctggaaaagggcaggcctgcat
agggaagagggtatatcccaaacacctctgtgccatcaacaatttcacag
gctcatttacttctctctcccaacccccaccccctctcccaatcccctcc
tccatccctacctgctcactcctgccatgtttcctaccatctttctttgt
gtccatctgtctgaagaccttgtctgttcgcttctcaggcatggacttgt
ccccgggcatcctcatcacggagggcaccatcttgtagatggcctgcaaa
cgggcatctgtgagtgtgctctggaggatggagggtgggttatggttctc
gctctgctaaccaaggagcatggacagggctgagtcaggacccttctctc
atcacaacaagtctcacagacaaggtgctgggcaaagggagccaggaaag
tttaagtgacgttcaagagcacaggatacagttggggtgtggaaagaatg
ggagggctccttgggttcagattagaggggaggttgtggttcaagcgtct
gtctgaaaggaaggacttttggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_23278500_23279041
seq2: B6Ng01-335P08.b_487_999

seq1  TTTTTGTCTGATTTACCCATTCCTTCTATTGCTTATTCAATGATTGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGATTTACCCATTCCTTCTATTGCTTATTCAATGATTGAGAT  50

seq1  TTTTCTTCCGTATCTCTGTTCTCTGGGTGAACTTTGCCTCTGTAGTTCCT  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTC-TCCGTATCTCTGTTCTCTGGGTGAACTTTGCCTCTGTAGTTCCT  99

seq1  TTTTGCAGTCCTAAATTTTTATTTCCACTATTTCCTAAGATTTAGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTCCTAAATTTTTATTTCCACTATTTCCTAAGATTTAGTTTTC  149

seq1  -TTTTTTGCTTCTATTTCCACTTTTATGTATTGAATAGTTTTGTTTACTT  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTTCTATTTCCACTTTTATGTATTGAATAGTTTTGTTTACTT  199

seq1  CACCCGTTGGTGTGTTCTTTCTTCGCTTTATTTATAGGAATTTTGGCTTC  249
      ||||| |||||||||||||||| |||||| ||||||||||||||||||||
seq2  CACCCATTGGTGTGTTCTTTCTACGCTTTGTTTATAGGAATTTTGGCTTC  249

seq1  CTCTACTTTTTGGTTTGTGTGTTCCTGGCCTTCTTTGTGGAATTTA-TTG  298
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CTCTACTTTTTGGTTTGTGTGTTCCTGGCCTTCTTTATGGAATTTATTTG  299

seq1  ATTTCCTCCAA-TTTTGTTCTGTTTTCCTGGATTTCTCTAAGTGATTTGG  347
      |||||||| || ||||||||||||||||||||||||||||||||||||| 
seq2  ATTTCCTCTAATTTTTGTTCTGTTTTCCTGGATTTCTCTAAGTGATTTGA  349

seq1  TCATTTCCTCTTTAAGGAACTCTGTTATCTCCATACA-TTTGGGTTAGAG  396
      ||||||||||||| ||||||||||| ||||||||||| |||||| |||||
seq2  TCATTTCCTCTTTTAGGAACTCTGTCATCTCCATACATTTTGGGGTAGAG  399

seq1  TG-TTTTCTTGTAATTTAGCTTTGTTGGAATATTTAAG-ACCTTCTTT-G  443
      || ||||||||||||||||||||||||||||||||||| || |||||| |
seq2  TGTTTTTCTTGTAATTTAGCTTTGTTGGAATATTTAAGAACTTTCTTTGG  449

seq1  ACAATATAAATGAGCTCA-GAGTC-ATTAGCCAGAGAGTG---ATAAATG  488
      ||||||| |||||| ||| ||||| |||||||||||||||   |||||||
seq2  ACAATATTAATGAGATCAGGAGTCAATTAGCCAGAGAGTGTGAATAAATG  499

seq1  CTGGTCCT--TATTACATTATCGAGTATCAACGTCATGGAATGGAATGGC  536
      ||||||||  |||                                     
seq2  CTGGTCCTTCTATA------------------------------------  513

seq1  GCTATA  542
            
seq2  ------  513


seq1: chr12_18998830_18999752
seq2: B6Ng01-335P08.g_68_993 (reverse)

seq1  CCCACC-AAAGATCTTCCTTTCAGACAGACGCTTTGACCCACAACCTCCC  49
      |||||| ||||  ||||||||||||||||||| |||| ||||||||||||
seq2  CCCACCAAAAGTCCTTCCTTTCAGACAGACGC-TTGAACCACAACCTCCC  49

seq1  CTCTAATCTGAA-CCAAGGAGCCCT-CCATTC-TTCCACACCCCAACTGT  96
      |||||||||||| |||||||||||| |||||| |||||||||||||||||
seq2  CTCTAATCTGAACCCAAGGAGCCCTCCCATTCTTTCCACACCCCAACTGT  99

seq1  ATCCTGTGCTCTTGAACGTCACTTAAACTTTCCTGGCTCCCTTTGCCCAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGCTCTTGAACGTCACTTAAACTTTCCTGGCTCCCTTTGCCCAG  149

seq1  CACCTTGTCTGTGAGACTTGTTGTGATGAGAGAAGGGTCCTGACTCAGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTCTGTGAGACTTGTTGTGATGAGAGAAGGGTCCTGACTCAGCC  199

seq1  CTGTCCATGCTCCTTGGTTAGCAGAGCGAGAACCATAACCCACCCTCCAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATGCTCCTTGGTTAGCAGAGCGAGAACCATAACCCACCCTCCAT  249

seq1  CCTCCAGAGCACACTCACAGATGCCCGTTTGCAGGCCATCTACAAGATGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGCACACTCACAGATGCCCGTTTGCAGGCCATCTACAAGATGG  299

seq1  TGCCCTCCGTGATGAGGATGCCCGGGGACAAGTCCATGCCTGAGAAGCGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCGTGATGAGGATGCCCGGGGACAAGTCCATGCCTGAGAAGCGA  349

seq1  ACAGACAAGGTCTTCAGACAGATGGACACAAAGAAAGATGGTAGGAAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAGGTCTTCAGACAGATGGACACAAAGAAAGATGGTAGGAAACA  399

seq1  TGGCAGGAGTGAGCAGGTAGGGATGGAGGAGGGGATTGGGAGAGGGGGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGTGAGCAGGTAGGGATGGAGGAGGGGATTGGGAGAGGGGGTG  449

seq1  GGGGTTGGGAGAGAGAAGTAAATGAGCCTGTGAAATTGTTGATGGCACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGGAGAGAGAAGTAAATGAGCCTGTGAAATTGTTGATGGCACAG  499

seq1  AGGTGTTTGGGATATACCCTCTTCCCTATGCAGGCCTGCCCTTTTCCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTGGGATATACCCTCTTCCCTATGCAGGCCTGCCCTTTTCCAGC  549

seq1  CCACTTGATTCAGCTCTGATTGAGGGAGGGAGACTAGAATTCAGGGCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGATTCAGCTCTGATTGAGGGAGGGAGACTAGAATTCAGGGCCAG  599

seq1  GTACACCTAGCCTGCATCCTGCACCCTTCCTAGGGCTCTATAACCATGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTAGCCTGCATCCTGCACCCTTCCTAGGGCTCTATAACCATGGG  649

seq1  CATTGTCAGTAGACCCTCTGAGCTGTAGGCTTCATCCCTGTTGTCTGAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAGTAGACCCTCTGAGCTGTAGGCTTCATCCCTGTTGTCTGAGT  699

seq1  TAGGGTTTCCATTGCTCTGATGACACACCATGGCCACAAGCAACTTGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCCATTGCTCTGATGACACACCATGGCCACAAGCAACTTGGGG  749

seq1  AGGAAATGGTTTATTCACTCACAGTTTCCATATAACAGTTCATCATCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGTTTATTCACTCACAGTTTCCATATAACAGTTCATCATCAAA  799

seq1  AGCAATGAGGGTATGACTCAAACAGGGCAGGGACCTGGAGGCAGGAGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAGGGTATGACTCAAACAGGGCAGGGACCTGGAGGCAGGAGCTG  849

seq1  ATACAGAGACCATGAAAGGCTTGCTACTTCCTGGCTTGCTCCCCATGGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGACCATGAAAGGCTTGCTACTTCCTGGCTTGCTCCCCATGGCT  899

seq1  TGCTCAGCCTTCTTTCTTATAGAATTC  923
      |||||||||||||||||||||||||||
seq2  TGCTCAGCCTTCTTTCTTATAGAATTC  926


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