BAC Information

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BAC

Clone NameB6Ng01-337J06
Chromosome12 (Build37)
Map Location 36,635,879 - 36,753,833
singlet/doubletdoublet
Overlap geneAgr3, Agr2, Tspan13
Upstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866
Downstream geneEG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J06.bB6Ng01-337J06.g
ACCGA122158GA122159
length868892
definitionB6Ng01-337J06.b B6Ng01-337J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,635,879 - 36,636,741)(36,752,944 - 36,753,833)
sequence
gaattcaataaacaataggatgtgactatccaaatttgttctgtcaagct
atagcattggaaatagttaatgataacatactcagaaaccactgtagcac
caatataatatctcatcatgacaagaatccaacttagctatactgtgaag
tccgaatttggccaataggatcagtcttaaaagtcagattatctgggctg
ggggtgggagtggcatataccttcaatcctagcatgaaggaggcagagag
aagatgagggaaggagaacaaacagcaagatagagaatggttggggtttg
attaggggaggtgtttcagtgaagtagatgctcatctctgggcatggtaa
tattaggatatgtagactcacacacatctctttccctgtcatatccaagt
tacatatcacgatccacctactgtctcagttctttttgctagtcagacat
cagatgtctgaatcaaagattatcttccacttaggtttccaagcttcagt
ggctcttgggttataagaacaacttcaataaaggcagacattctctagga
tatatttgttcacacacacagatgaccacgccttcccacctctctgtatc
cacccaccattcctctcatcatcatcagtctctcattccttcccttctct
atcacctcatccacatctccctccatccctctcattatccccccccccaa
tttaatcattcttcccttccctccctccatctctcctcagctttgtcaca
aataaaaaaacacaccagtgaccacagaaacttttaagactgtgtgactc
tccaggttcactggctagttcagaaaggtcaagagagagagagagagaga
gagagagagagagagaga
gaattcacagtgggaaaagaggtgttgatggttccggtggcacatgcaat
gtcatctgcacttgggaagccaagacaagagaatcctgactttgaggcta
gcctgagctatcttaccttatctcggacactctgaaacccttccaacaaa
gatgaagccacccctaaaccaataacagacaaagcaaagcaaagcagaac
aaacaaaatgttaaaccttcagccaaacgaagccaataagacagaaaaaa
acatggggcaggtgtcaacacagctctggtcattccatctgtaccgtgtg
tctcaggcctgtgtacagtattggaataggtcgtggcaggggctgtgatg
tacgcaaccaggttaagtgacaagaacaatttctgacttctgtctttaag
tcttgaatttactatttaaatgtaaagtttattaacttaatactttaaga
atatttaacttttaacattcctgatgtttaagaatcccattaatggctgg
gcatggtggcacacgcctttaatcccagcactcggaagtggggggggggt
ggcagaggcaggcggatttctgagttcaaggccagcctggtctacaaagt
gagttccaggacagccagggctacacagagaaaccctgtctttggaaaac
caaaaaaaaaaaaaaaagaatcccattaatgtaggaagggtttggcatga
ttttggacgaacgaactctttaaagctgtgtatgtacttacatgtatgct
acccagtgtgcgtgtggagaccagaggaccccagaaggactttttatgtt
aagggaaatgcagattgaagatcttgtctcatgacctgaattagtaaatg
cgccttctctcatccagaatttgatgttagccagtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36635879_36636741
seq2: B6Ng01-337J06.b_46_913

seq1  GAATTCAATAAACAATAGGATGTGACTATCCAAATTTGTTCTGTCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAACAATAGGATGTGACTATCCAAATTTGTTCTGTCAAGCT  50

seq1  ATAGCATTGGAAATAGTTAATGATAACATACTCAGAAACCACTGTAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGGAAATAGTTAATGATAACATACTCAGAAACCACTGTAGCAC  100

seq1  CAATATAATATCTCATCATGACAAGAATCCAACTTAGCTATACTGTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATATCTCATCATGACAAGAATCCAACTTAGCTATACTGTGAAG  150

seq1  TCCGAATTTGGCCAATAGGATCAGTCTTAAAAGTCAGATTATCTGGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAATTTGGCCAATAGGATCAGTCTTAAAAGTCAGATTATCTGGGCTG  200

seq1  GGGGTGGGAGTGGCATATACCTTCAATCCTAGCATGAAGGAGGCAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGAGTGGCATATACCTTCAATCCTAGCATGAAGGAGGCAGAGAG  250

seq1  AAGATGAGGGAAGGAGAACAAACAGCAAGATAGAGAATGGTTGGGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGAAGGAGAACAAACAGCAAGATAGAGAATGGTTGGGGTTTG  300

seq1  ATTAGGGGAGGTGTTTCAGTGAAGTAGATGCTCATCTCTGGGCATGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGAGGTGTTTCAGTGAAGTAGATGCTCATCTCTGGGCATGGTAA  350

seq1  TATTAGGATATGTAGACTCACACACATCTCTTTCCCTGTCATATCCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGATATGTAGACTCACACACATCTCTTTCCCTGTCATATCCAAGT  400

seq1  TACATATCACGATCCACCTACTGTCTCAGTTCTTTTTGCTAGTCAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCACGATCCACCTACTGTCTCAGTTCTTTTTGCTAGTCAGACAT  450

seq1  CAGATGTCTGAATCAAAGATTATCTTCCACTTAGGTTTCCAAGCTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCTGAATCAAAGATTATCTTCCACTTAGGTTTCCAAGCTTCAGT  500

seq1  GGCTCTTGGGTTATAAGAACAACTTCAATAAAGGCAGACATTCTCTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGGGTTATAAGAACAACTTCAATAAAGGCAGACATTCTCTAGGA  550

seq1  TA-ATTTGTTCACACACACAGATGACCACGCCTTCCCACCTCTCTGTATC  599
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTTCACACACACAGATGACCACGCCTTCCCACCTCTCTGTATC  600

seq1  CACCCACCATTCCTCTCATCATCATCAGTCTCTCATTCCTT-CCTTCTCT  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACCCACCATTCCTCTCATCATCATCAGTCTCTCATTCCTTCCCTTCTCT  650

seq1  ATCACCTCATCCACATCTCCCTCCATCCCTCTCATTATCCCCCCCCCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCATCCACATCTCCCTCCATCCCTCTCATTATCCCCCCCCCCAA  700

seq1  TTTAATCATTCTT-CCTTCCCTCCCTCCATCTCTCCTCAGCTTTGTCACA  747
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATTCTTCCCTTCCCTCCCTCCATCTCTCCTCAGCTTTGTCACA  750

seq1  A--TAAAAAACACACCAGTGACCACAGAAACTTTTAAGACTGTGTGACTC  795
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAACACACCAGTGACCACAGAAACTTTTAAGACTGTGTGACTC  800

seq1  TCCAGGTTCACTGGCTAGTTCAGAAAGGTCAAGAGAGAGAGAGAGAGAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTCACTGGCTAGTTCAGAAAGGTCAAGAGAGAGAGAGAGAGAGA  850

seq1  GAGAGAGAGAGAGAGAGA  863
      ||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGA  868

seq1: chr12_36752944_36753833
seq2: B6Ng01-337J06.g_63_954 (reverse)

seq1  CCCACCCACCTGCTAACATCAAATTCTGGATGAGAG-AGGCGCATTTACT  49
      |||||||||  ||||||||||||||||||||||||| |||||||||||||
seq2  CCCACCCACTGGCTAACATCAAATTCTGGATGAGAGAAGGCGCATTTACT  50

seq1  AATTCAGGTCATGAGACAAGATCTTCAATCTGCATTTCCCTTAACATAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTCATGAGACAAGATCTTCAATCTGCATTTCCCTTAACATAAA  100

seq1  AAGTCCTTCTGGGGTCCTCTGGTCTCCACACGCACACTGGGTAGCATACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTCTGGGGTCCTCTGGTCTCCACACGCACACTGGGTAGCATACA  150

seq1  TGTAAGTACATACACAGCTTTAAAGAGTTCGTTCGTCCAAAATCATGCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACATACACAGCTTTAAAGAGTTCGTTCGTCCAAAATCATGCCA  200

seq1  AACCCTTCCTACATTAATGGGATTCTTTTTTTTTTTTTTTTGGTTTTCC-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACCCTTCCTACATTAATGGGATTCTTTTTTTTTTTTTTTTGGTTTTCCA  250

seq1  AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTA  300

seq1  GACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCACCCCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCACCCCCCC  350

seq1  CCCACTTCCGAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCAGCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCCGAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCAGCCAT  400

seq1  TAATGGGATTCTTAAACATCAGGAATGTTAAAAGTTAAATATTCTTAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGATTCTTAAACATCAGGAATGTTAAAAGTTAAATATTCTTAAAG  450

seq1  TATTAAGTTAATAAACTTTACATTTAAATAGTAAATTCAAGACTTAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTTAATAAACTTTACATTTAAATAGTAAATTCAAGACTTAAAGA  500

seq1  CAGAAGTCAGAAATTGTTCTTGTCACTTAACCTGGTTGCGTACATCACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCAGAAATTGTTCTTGTCACTTAACCTGGTTGCGTACATCACAG  550

seq1  CCCCTGCCACGACCTATTCCAATACTGTACACAGGCCTGAGACACACGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCACGACCTATTCCAATACTGTACACAGGCCTGAGACACACGGT  600

seq1  ACAGATGGAATGACCAGAGCTGTGTTGACACCTGCCCCATGTTTTTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGAATGACCAGAGCTGTGTTGACACCTGCCCCATGTTTTTTTCT  650

seq1  GTCTTATTGGCTTCGTTTGGCTGAAGGTTTAACATTTTGTTTGTTCTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTGGCTTCGTTTGGCTGAAGGTTTAACATTTTGTTTGTTCTGCT  700

seq1  TTGCTTTGCTTTGTCTGTTATTGGTTTAGGGGTGGCTTCATCTTTGTTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTTTGTCTGTTATTGGTTTAGGGGTGGCTTCATCTTTGTTGG  750

seq1  AAGGGTTTCAGAGTGTCCGAGATAAGGTAAGATAGCTCAGGCTAGCCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTCAGAGTGTCCGAGATAAGGTAAGATAGCTCAGGCTAGCCTCA  800

seq1  AAGTCAGGATTCTCTTGTCTTGGCTTCCCAAGTGCAGATGACATTGCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGATTCTCTTGTCTTGGCTTCCCAAGTGCAGATGACATTGCATG  850

seq1  TGCCACCGGAACCATCAACACCTCTTTTCCCACTGTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCGGAACCATCAACACCTCTTTTCCCACTGTGAATTC  892