BAC Information

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BAC

Clone NameB6Ng01-337O03
Chromosome12 (Build37)
Map Location 11,207,443 - 11,208,494
singlet/doubletsinglet
Overlap genenone
Upstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276
Downstream geneMsgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337O03.bB6Ng01-337O03.g
ACCGA122361GA122362
length1,0471,163
definitionB6Ng01-337O03.b B6Ng01-337O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaactcttgaatttattctttttcataatgaaaaaatttatac
tccaaagactccacctttgctatatgccagatcactttctagcaaaaaga
gcaaacatgagaaagcaaacatgatgaagtttcaaggatatcagcaggta
tcaaagggcctgtgtttggaggaagggctcagaatccaggcactgggtga
cagactgttggatgtcaagcgtgagctgggggaccaggaaagagaaaaag
agagaaggaatcagatgccagcctcagccctgccactgagcccagcattg
tgcttgataaagggcatgcagagaggggtgcttacaactgccagagagag
acaggacaagacactacaaggccagtattctttgcaggacacagggaagg
ctacacaaagcaagaggctcatgaggttgtgtctgggcgtctgatggaac
cacaagcatccttagctggggagtccatctccagtgcttaaagggaggaa
tcacgtgggaggaatcacctgggttggtttggctgaagcaatgagtgaga
ttgaaggggtagagaacagaaaaagcacgggcaagcaagagtggaccggg
ggaggcctgagcaacatcgagctgtggggcagccaacccttggcctgcgc
aaagccccacccactggttaacccaggtagttattaattgatgttctatc
aaagcgcttggcaaaggacacagcaacacctgcgttgtgagcattgacgt
tgtggtccacgtggtgcaatcacgaggaactgttttcgtagtctcacttc
ttgcagtctttacccttatccttcctcttctgcgccgcacctggggcttg
ggctgtttctatgacaaacactggagactgggtaatgtgtaagtgatagt
ttacttcttccagttctggatgctaagaaagccaagatcgaggcaccagc
attcagaagctgctgaaggccctatttgtctctttacattgcacagggaa
aaggataaaaaagagtgaagctgtacgaagtctctctgcaggtacta
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gagattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaactggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacgggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagggcatcatcctgagtgaggtaacacattcacaa
aggaactcacacaatatgtactcactgataagtggatattagccccaaac
ctaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgcccctccttagaattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttattgaa
aggacccagatgtagctgtctcttgtgaggctatgccggggccctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcacagggctcc
caatggaggagctagagaaagtagccagagctaaaggatctgcacctata
ggtggacacactatgactacagtacctgagctcttgactctagctgcata
tgtatcaaagatgggctagtcgtcatcacttgaaagaagagccaattgac
tgcaatttatattggccagttacaggatcgtcaaggccaaaaaagaggga
aagattggtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11207443_11208494
seq2: B6Ng01-337O03.b_49_1095 (reverse)

seq1  TAGTACCTGGCAGGAGAGACTTCGTACAGCTTTCACTCCTTTTTTATCCT  50
      |||||||| ||| ||||||||||||||||| |||||| ||||||||||||
seq2  TAGTACCT-GCA-GAGAGACTTCGTACAGC-TTCACT-CTTTTTTATCCT  46

seq1  TTCCCTTGTGCAATGTAAAGAGACAAATAGGGCCTTCAGCAGCTTCTTGA  100
      || || |||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCCCTGTGCAATGTAAAGAGACAAATAGGGCCTTCAGCAGCTTC-TGA  95

seq1  ATGCTGGTGCCTCGATCTTGGCTTTCTTAGCATCCAGAACTGGAAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGTGCCTCGATCTTGGCTTTCTTAGCATCCAGAACTGGAAGAAGT  145

seq1  AAACTATCACTTACACATTACCCAGTCTCCAGTGTTTGTCATAGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCACTTACACATTACCCAGTCTCCAGTGTTTGTCATAGAAACAG  195

seq1  CCCAAGCCCCAGGTGCGGCGCAGAAGAGGAAGGATAAGGGTAAAGACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCCCAGGTGCGGCGCAGAAGAGGAAGGATAAGGGTAAAGACTGC  245

seq1  AAGAAGTGAGACTACGAAAACAGTTCCTCGTGATTGCACCACGTGGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAGACTACGAAAACAGTTCCTCGTGATTGCACCACGTGGACCA  295

seq1  CAACGTCAATGCTCACAACGCAGGTGTTGCTGTGTCCTTTGCCAAGCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTCAATGCTCACAACGCAGGTGTTGCTGTGTCCTTTGCCAAGCGCT  345

seq1  TTGATAGAACATCAATTAATAACTACCTGGGTTAACCAGTGGGTGGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAACATCAATTAATAACTACCTGGGTTAACCAGTGGGTGGGGCT  395

seq1  TTGCGCAGGCCAAGGGTTGGCTGCCCCACAGCTCGATGTTGCTCAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCAGGCCAAGGGTTGGCTGCCCCACAGCTCGATGTTGCTCAGGCCT  445

seq1  CCCCCGGTCCACTCTTGCTTGCCCGTGCTTTTTCTGTTCTCTACCCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGGTCCACTCTTGCTTGCCCGTGCTTTTTCTGTTCTCTACCCCTTC  495

seq1  AATCTCACTCATTGCTTCAGCCAAACCAACCCAGGTGATTCCTCCCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACTCATTGCTTCAGCCAAACCAACCCAGGTGATTCCTCCCACGT  545

seq1  GATTCCTCCCTTTAAGCACTGGAGATGGACTCCCCAGCTAAGGATGCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCCTTTAAGCACTGGAGATGGACTCCCCAGCTAAGGATGCTTG  595

seq1  TGGTTCCATCAGACGCCCAGACACAACCTCATGAGCCTCTTGCTTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCATCAGACGCCCAGACACAACCTCATGAGCCTCTTGCTTTGTGT  645

seq1  AGCCTTCCCTGTGTCCTGCAAAGAATACTGGCCTTGTAGTGTCTTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCTGTGTCCTGCAAAGAATACTGGCCTTGTAGTGTCTTGTCCT  695

seq1  GTCTCTCTCTGGCAGTTGTAAGCACCCCTCTCTGCATGCCCTTTATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTCTGGCAGTTGTAAGCACCCCTCTCTGCATGCCCTTTATCAAG  745

seq1  CACAATGCTGGGCTCAGTGGCAGGGCTGAGGCTGGCATCTGATTCCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTGGGCTCAGTGGCAGGGCTGAGGCTGGCATCTGATTCCTTCT  795

seq1  CTCTTTTTCTCTTTCCTGGTCCCCCAGCTCACGCTTGACATCCAACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTCTTTCCTGGTCCCCCAGCTCACGCTTGACATCCAACAGTC  845

seq1  TGTCACCCAGTGCCTGGATTCTGAGCCCTTCCTCCAAACACAGGCCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCAGTGCCTGGATTCTGAGCCCTTCCTCCAAACACAGGCCCTTT  895

seq1  GATACCTGCTGATATCCTTGAAACTTCATCATGTTTGCTTTCTCATGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGCTGATATCCTTGAAACTTCATCATGTTTGCTTTCTCATGTTT  945

seq1  GCTCTTTTTGCTAGAAAGTGATCTGGCATATAGCAAAGGTGGAGTCTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTTGCTAGAAAGTGATCTGGCATATAGCAAAGGTGGAGTCTTTG  995

seq1  GAGTATAAATTTTTTCATTATGAAAAAGAATAAATTCAAGAGTTTGGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAATTTTTTCATTATGAAAAAGAATAAATTCAAGAGTTTGGAAT  1045

seq1  TC  1052
      ||
seq2  TC  1047