BAC Information

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BAC

Clone NameB6Ng01-338F05
Chromosome12 (Build37)
Map Location 111,735,730 - 111,854,079
singlet/doubletdoublet
Overlap genePpp2r5c, 9430024F10Rik, Dync1h1
Upstream geneGtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F05.bB6Ng01-338F05.g
ACCGA122665GA122666
length324968
definitionB6Ng01-338F05.b B6Ng01-338F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,853,756 - 111,854,079)(111,735,730 - 111,736,688)
sequence
agtaatttcttctagcctcagtttggcaccgtgaacacacatagtgcacg
tacatacatgtaggcaaacatttataaacattaaaaataaatgaacaact
ctcctgcatcctaacttagtgacaagcccatctcccaagtagcttccttc
acagggctaacattttatatttcgattttagtactgtctactaaatggtt
tactttaatggcctagtcggtcatcaatgaaaggagaggcccttggtcct
gtgaaggttctatgtcccagtatagggaatgccagggccaggaagcggga
gtgggtgagttggggagttgggga
gaattcagagcagagagtttgccagcttgcctgaggtcctggagcagttg
gtgacagaggccttgggctttctgactcacagttctgggctcacatgctc
cagacaggcatgggaagctgctcttgcaggttcctttatctcggggatct
cggcagaggtgtctgctgcgtttacagtggtgtagagtgcgggctcccga
aacaggctggtcaatctgatggtgtcatctagaaaaaacacaagatgcag
atcctggggcgggaaggtaaggctcttcccaaaggcttgtggttatggtg
gaattaactcaccagggccttgagcggtgtagctgtatccagtgccggct
gcagcctcttcacaaccctggtgctcatggtgacctgcctgtgtttgagt
taaggacctcagctgccccgagagagccactgtctagctggatttgttaa
agcaaagctggcaagaatctcattgctgaactcaatgttattcctggtaa
aggtgtttagtgccatcctgagagtctggcagtgtggtaattctcttctt
tgtgccaacgctaagtagcgtggaattcttgtaaaacagaggcaccttcc
tccggaagcaggctctggctcagctcacccatttgttgaaggagaaatgg
ttgtagatacaaatggttcatgacctgtacggtgaagaaatctccctgtt
tctggaatcctgggtgcactgttgggagcatgctgacctcgcagcctttt
ccgtaccagatgagcttgagtgtcacacagaaaccaggttgctcagctta
ctttcaaatccaagaagtcgtttatcccacggacggaacggcaggactga
gtcttcagctcctgcccgtggccatgtagaggcctgatgtcctttaggcg
agcggttagaagtcaccatcaatgccgctgggtccatgtgcttggtcgga
aacttggtttatgttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111853756_111854079
seq2: B6Ng01-338F05.b_55_378 (reverse)

seq1  TCCCCAACTCCCCAACTCACCCACTCCCGCTTCCTGGCCCTGGCATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACTCCCCAACTCACCCACTCCCGCTTCCTGGCCCTGGCATTCCC  50

seq1  TATACTGGGACATAGAACCTTCACAGGACCAAGGGCCTCTCCTTTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGGACATAGAACCTTCACAGGACCAAGGGCCTCTCCTTTCATTG  100

seq1  ATGACCGACTAGGCCATTAAAGTAAACCATTTAGTAGACAGTACTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCGACTAGGCCATTAAAGTAAACCATTTAGTAGACAGTACTAAAAT  150

seq1  CGAAATATAAAATGTTAGCCCTGTGAAGGAAGCTACTTGGGAGATGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATATAAAATGTTAGCCCTGTGAAGGAAGCTACTTGGGAGATGGGCT  200

seq1  TGTCACTAAGTTAGGATGCAGGAGAGTTGTTCATTTATTTTTAATGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAAGTTAGGATGCAGGAGAGTTGTTCATTTATTTTTAATGTTTA  250

seq1  TAAATGTTTGCCTACATGTATGTACGTGCACTATGTGTGTTCACGGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTGCCTACATGTATGTACGTGCACTATGTGTGTTCACGGTGCC  300

seq1  AAACTGAGGCTAGAAGAAATTACT  324
      ||||||||||||||||||||||||
seq2  AAACTGAGGCTAGAAGAAATTACT  324

seq1: chr12_111735730_111736688
seq2: B6Ng01-338F05.g_68_1035

seq1  GAATTCAGAGCAGAGAGTTTGCCAGCTTGCCTGAGGTCCTGGAGCAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAGAGAGTTTGCCAGCTTGCCTGAGGTCCTGGAGCAGTTG  50

seq1  GTGACAGAGGCCTTGGGCTTTCTGACTCACAGTTCTGGGCTCACATGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGAGGCCTTGGGCTTTCTGACTCACAGTTCTGGGCTCACATGCTC  100

seq1  CAGACAGGCATGGGAAGCTGCTCTTGCAGGTTCCTTTATCTCGGGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGCATGGGAAGCTGCTCTTGCAGGTTCCTTTATCTCGGGGATCT  150

seq1  CGGCAGAGGTGTCTGCTGCGTTTACAGTGGTGTAGAGTGCGGGCTCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAGGTGTCTGCTGCGTTTACAGTGGTGTAGAGTGCGGGCTCCCGA  200

seq1  AACAGGCTGGTCAATCTGATGGTGTCATCTAGAAAAAACACAAGATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGGTCAATCTGATGGTGTCATCTAGAAAAAACACAAGATGCAG  250

seq1  ATCCTGGGGCGGGAAGGTAAGGCTCTTCCCAAAGGCTTGTGGTTATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGCGGGAAGGTAAGGCTCTTCCCAAAGGCTTGTGGTTATGGTG  300

seq1  GAATTAACTCACCAGGGCCTTGAGCGGTGTAGCTGTATCCAGTGCCGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAACTCACCAGGGCCTTGAGCGGTGTAGCTGTATCCAGTGCCGGCT  350

seq1  GCAGCCTCTTCACAACCCTGGTGCTCATGGTGACCTGCCTGTGTTTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTCTTCACAACCCTGGTGCTCATGGTGACCTGCCTGTGTTTGAGT  400

seq1  TAAGGACCTCAGCTGCCCCGAGAGAGCCACTGTCTAGCTGGATTTGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCTCAGCTGCCCCGAGAGAGCCACTGTCTAGCTGGATTTGTTAA  450

seq1  AGCAAAGCTGGCAAGAATCTCATTGCTGAACTCAATGTTATTCCTGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTGGCAAGAATCTCATTGCTGAACTCAATGTTATTCCTGGTAA  500

seq1  AGGTGTTTAGTGCCATCCTGAGAGTCTGGCAGTGTGGTAATTCTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTAGTGCCATCCTGAGAGTCTGGCAGTGTGGTAATTCTCTTCTT  550

seq1  TGTGCCAACGCTAAGTAGCGTGGAATTCTTGTAAAACAGAGGCACCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAACGCTAAGTAGCGTGGAATTCTTGTAAAACAGAGGCACCTTCC  600

seq1  TCCGGAAGCAGGCTCTGGCTCAGCTCACCCATTTGTTGAAGGAGAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAAGCAGGCTCTGGCTCAGCTCACCCATTTGTTGAAGGAGAAATGG  650

seq1  TTGTAGATACAAATGGTTCATGACCTGTACGGTGAAGAAATCTCCCTG-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGTAGATACAAATGGTTCATGACCTGTACGGTGAAGAAATCTCCCTGTT  700

seq1  TCTGGAATCCTGGGTGCACTGTTGGGAGCATGCTGACCTCGCAGCCTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATCCTGGGTGCACTGTTGGGAGCATGCTGACCTCGCAGCCTTTT  750

seq1  CCGTACCAGATGAGCTTGAGTGTCACACAGAAACCAGGTTGCTCAGCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACCAGATGAGCTTGAGTGTCACACAGAAACCAGGTTGCTCAGCTTA  800

seq1  C-TTCAAATCCAAGAAGTCG-TTAT-CCACGGACGG-ACGGCAGGACTGA  845
      | |||||||||||||||||| |||| |||||||||| |||||||||||||
seq2  CTTTCAAATCCAAGAAGTCGTTTATCCCACGGACGGAACGGCAGGACTGA  850

seq1  GTCTTCAGCTCCTGCCCGTGGCCATGTAGA-GTCTGATGTCCTTTAGGCG  894
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GTCTTCAGCTCCTGCCCGTGGCCATGTAGAGGCCTGATGTCCTTTAGGCG  900

seq1  AGCGTTTAGAAGTCACCAGC-ATGGCGCTGGG-CCATGTGCTTGGTCCGA  942
      |||| ||||||||||||| | ||| ||||||| |||||||||||||| ||
seq2  AGCGGTTAGAAGTCACCATCAATGCCGCTGGGTCCATGTGCTTGGTCGGA  950

seq1  GACTTGG-TCATGTTACA  959
       |||||| | ||||||||
seq2  AACTTGGTTTATGTTACA  968