BAC Information

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BAC

Clone NameB6Ng01-338N07
Chromosome12 (Build37)
Map Location 47,476,158 - 47,477,288
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N07.bB6Ng01-338N07.g
ACCGA123002GA123003
length1,1201,214
definitionB6Ng01-338N07.b B6Ng01-338N07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacatgtgtctctgacctgctatgtctgaaaaactgctttcttaa
agttagcctacactcctggctcatccaatccaatcttcccatactctctt
ctttttttctctctctcttttttttaattaggtattttccttgtttacat
ttctaatgttatcccaaaagtcccccataccaactcccccaaccccctac
ccacccactccccctttttggccctggtgttcccctgtactggggcatat
aaagtttgcaagtccaaagggcctctctttccagtgatggctgactagga
catcttttgatatatatgcagctagagacaagagctcctgggtactggtt
agttcatattgttgttccacctatagggttgcagttccctttagctcctt
gggtactttctctagctcctccattgggggccctgtgacccatccaatag
ctgattgtgagcatccacttctgtgtttgctagtccccggcatagtctcg
caagagacagctaagagcggtgctcttctatcttctgttctctgcacatt
gagcagttgggagtcactgggtccattgctgacacaaactctacttgatg
ggaaaaaagaatggggatggcaggagttgaagaggtgaatatgtttaaat
acactatgaaattctcaaaaagttattttagaaatgatttaaacaaacac
cccctccccccaaaaagaaacaaagtgaggctagatgaactcagcttctc
tgtgccacaacagtgtgaacacttgtctcaaacctctgtcaccatgactt
cctaacaagtcaaattataagcccagttgaagccacctatttgtaacttg
ttttggtcaggtatttttgtcccagcaacacgaaaagtgagcagtgtatg
cacgttcattattatatgtcacattacatatctgtattgtatttatatat
acttatattttggtaaatgtgggagatttgttatggcacttatacatatc
ctgctcataccttccatgtagtttaaacatcctacattatttaggaaaaa
tgtgatacaaatatgacagctgttttatctatttctttataggtacaaga
aaatcttcacaggatagtat

gaattcaagaggatggactcaagaaaatcaaataactctattaaaacatg
gggtacagaactaaagaaagaattctcaactgaggaatactgaagggctg
agaagcacctgaaaaaaatgttcaaaattcttaatcagcaggaaaataca
aatcaaaacaaccctgagattccatctcacaccagtcagaatggctaaga
tcaaaaattcatgtgacagcagatggtggcgaggatgtggaaaaagagga
acactcatccattgctggtggaattgaagctggtacaaccactctggaaa
ttcgtctggcggttcctcagaaaactggacatagtactaccggaagatcc
agcaattcctctcctgggcatataaccagaagatgttccaacttctaata
aggacacatgctccactatgttcatagcagccttatttataatagccaga
agttggaaataacccagatgtccctcaacagaggaatggatacagaaaac
gtggtacatttacacaatggagtactactcagctattaaaagaatgaatt
tatgaaattcttaggcaaatcaatgcatctggaggatatcgtcctgagta
aggtaacccaatcacaaaagaacccacatggtatgcactcactgataagc
agttattagcccagaaacttagagtatccaagatacaatttgcataacac
ataaaactcaagaagaaggaagaccaaagtgtagatactttgtctctcct
tagaatggggaacaaaatacctatcaaaggagttacagagacaaagttca
gagctaagacagaaggaaaaaccatccagagactgccccaccagggcatc
catcccatatataaccaccaaacctagacactattgcatatgccagaaga
ttttgcttacaggacactgacatacctctctcttgtgagtctatgtcaat
gcctggcaaatgcagaagtggatgctcacatcatctattagatggaacga
aaggccctatgagagctagggatgtactcaaggagctaaaggggtctgca
acttataggagaacaacaatataaacttaccagtactccagagcctgtgt
tcctctagttgcacatgtgtagcgaggatggccttagtacagtcatcatt
gccgaaaagcttggattgcgagaatcaatcgtccctagataccacggaca
atgtccacaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47476158_47477288
seq2: B6Ng01-338N07.b_48_1167

seq1  GAATTCACATGTGTCTCTGACCTGCTATGTCTGAAAAACTGCTTTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTGTCTCTGACCTGCTATGTCTGAAAAACTGCTTTCTTAA  50

seq1  AGTTAGCCTACACTCCTGGCTCATCCAATCCAATCTTCCCATACTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCCTACACTCCTGGCTCATCCAATCCAATCTTCCCATACTCTCTT  100

seq1  CTTTTTTTCTCTCTCTCTTTTTTTTAATTAGGTATTTTCCTTGTTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTCTCTCTCTTTTTTTTAATTAGGTATTTTCCTTGTTTACAT  150

seq1  TTCTAATGTTATCCCAAAAGTCCCCCATACCAACTCCCCCAACCCCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGTTATCCCAAAAGTCCCCCATACCAACTCCCCCAACCCCCTAC  200

seq1  CCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATAT  250

seq1  AAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCTGACTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCTGACTAGGA  300

seq1  CATCTTTTGATATATATGCAGCTAGAGACAAGAGCTCCTGGGTACTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATATATATGCAGCTAGAGACAAGAGCTCCTGGGTACTGGTT  350

seq1  AGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTT  400

seq1  GGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGACCCATCCAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGACCCATCCAATAG  450

seq1  CTGATTGTGAGCATCCACTTCTGTGTTTGCTAGTCCCCGGCATAGTCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTGAGCATCCACTTCTGTGTTTGCTAGTCCCCGGCATAGTCTCG  500

seq1  CAAGAGACAGCTAAGAGCGGTGCTCTTCTATCTTCTGTTCTCTGCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACAGCTAAGAGCGGTGCTCTTCTATCTTCTGTTCTCTGCACATT  550

seq1  GAGCAGTTGGGAGTCACTGGGTCCATTGCTGACACAAACTCTACTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTGGGAGTCACTGGGTCCATTGCTGACACAAACTCTACTTGATG  600

seq1  GGAAAAAAGAATGGGGATGGCAGGAGTTGAAGAGGTGAATATGTTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGAATGGGGATGGCAGGAGTTGAAGAGGTGAATATGTTTAAAT  650

seq1  ACACTATGAAATTCTCAAAAAGTTATTTTAGAAATGATTTAAACAAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGAAATTCTCAAAAAGTTATTTTAGAAATGATTTAAACAAACAC  700

seq1  CCCCTCCCCCCAAAAAGAAACAAAGTGAGGCTAGATGAACTCAGCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCCAAAAAGAAACAAAGTGAGGCTAGATGAACTCAGCTTCTC  750

seq1  TGTGCCACAACAGTGTGAACACTTGTCTCAAACCTCTGTCACCATGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACAACAGTGTGAACACTTGTCTCAAACCTCTGTCACCATGACTT  800

seq1  CCTAACAAGTCAAATTATAAGCCCAGTTGAAGCCACCTATTTGTAACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAGTCAAATTATAAGCCCAGTTGAAGCCACCTATTTGTAACTTG  850

seq1  TTTTGGTCAGGTA-TTTTGTCCCAGCAACACGAAAAGTGAGCAGTGTATG  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTCAGGTATTTTTGTCCCAGCAACACGAAAAGTGAGCAGTGTATG  900

seq1  CACGTTCATTATTATATGTCACATTACATATCTGTATTGTATTTAATATA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACGTTCATTATTATATGTCACATTACATATCTGTATTGTATTT-ATATA  949

seq1  TACTTATATTTTGGTAAATGTGGGAGATTTGTTATTGGCACTTATACATA  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACTTATATTTTGGTAAATGTGGGAGATTTGTTA-TGGCACTTATACATA  998

seq1  TCCTGCTCATACCTTCCCATGTAGTTTAAACAATCCCTACATTATTTAGG  1049
      ||||||||||||||| ||||||||||||||||   |||||||||||||||
seq2  TCCTGCTCATACCTT-CCATGTAGTTTAAACA--TCCTACATTATTTAGG  1045

seq1  GAAAAAATGTGGATACAAAATAGACAGCTGTTTTATCCTATTCTTTATAA  1099
        |||||||| ||||||||   |||||||||||||||   |||||||| |
seq2  --AAAAATGT-GATACAAATATGACAGCTGTTTTATCTATTTCTTTAT-A  1091

seq1  GGTAACAAGAAAAATCTCCACAGGAGTAGTAT  1131
      ||| ||||| ||||||| ||||||| ||||||
seq2  GGT-ACAAG-AAAATCTTCACAGGA-TAGTAT  1120


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