BAC Information

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BAC

Clone NameB6Ng01-339F08
Chromosome12 (Build37)
Map Location 46,095,144 - 46,197,077
singlet/doubletdoublet
Overlap geneStxbp6
Upstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F08.bB6Ng01-339F08.g
ACCGA123356GA123357
length1,1061,103
definitionB6Ng01-339F08.b B6Ng01-339F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,095,144 - 46,096,262)(46,195,980 - 46,197,077)
sequence
gaattctctatctaccaaaactaaagaggcatgtatgactcaacctgaga
actttatccctaatatagacctaaaagaatatgtcagtctaaacatcaag
cacatatatgtctgaaacatcgtagagcaacaccacctacaatgcctaac
ttggaacacctctaaaagtcaatcaatagcatgaaacatagtggtgctct
ttatgatcaaatcctctttagcaatgacagtgagaactacagctacatgc
agcaagaaggaatgaatctcatgaacaacactgagagcatgaagccaagc
cctcgatagtatatattaatgcaaaagtcataaacatgcaaatctaaatg
acagtattagaaacaacaacaacaaaataatggtgccgtttgtcaataca
accgtatagtccctagatatccttgtgtatagggaccagcaaccctagaa
ataccaagatcaaggaatgctcacatcacatagataaaacggtatggtga
ttgcttataatctacaaatcctccaacatactctacagtatttctagaag
actaataatctagttcaatacaaatgctatgcaaatagttgcaaatatgc
attatttggaaaataatgacaaggagaaaagtcgtatacatttaatacaa
atgtaattttatatttttgtttgtttttacttattttttatataattgct
aaactgaagaggcataagttttttctacattttaattatcttgctattat
aaaggtcatttcttttttttttttttttttgaggtactgtacttttactt
aggaaaccatctagtttcattaaattgtcatgtattatacataaatgcac
ctgaggccgtcaagtcaccaaagttgaatctattgttgcaatgttgctat
tttgattacatttaaaaatggttttaaatatatttaatagagagtaattg
aaatatggaataaataaggatattatttttacaaaagtattcaatgggaa
agtggatagaaacgatgcaagataacaggcaggaagatagcatatactag
atagcagtatatacggtcgttaacctagtctctccactctgtactacaat
tcatta

gaattccagagtataaacctgaccagattctagcctgatcagtatttagt
taaagcatcgttcaaatttggctcaaaattgtggaacttgtttttctatt
gtgaatctcaggattaactctgccccagtgctaccaacagtattcatcgg
agtagttacccataataggaaagaaataaaactagaaatagactgaatgt
tctcataaaggggataaaatctgagaaaggttgaagatgatgatacaact
tcaaataaccactactgagacaggttgagacataatgctaagtaatgaaa
gccatttacagaacaatatgttgtgccaatttttacacagtgctacacat
taacttgatgatgaaaagctttgcacacagaaataatgaaattctagtat
attacagctaatacatttataggggatttttttcattggatgatctgcag
tctctgaatttttgcaaagttcaaggattattttttatgtaacttgactg
tgaaattttcagtttgttcataattctaaattcttgtgagaattacataa
aaacctaaacattttctaagtggttataatcattgaaaaaataataaata
aatgggcagatattatggagaactgtttcaataatagagtgtcaacgctc
tgctagttatacatattcctttaagaacatttacactagaaactctaact
aaaatatttgaaaatgaaattatccaactgatttcaaaagatggcttatt
tttaataaatataattttataagttcatttcataagaattaacatatagt
aacccccttttagtttgttttgactatatgtctattaagattattactgt
gtctgttaaaggttatcatgtgattttttgtttcttataccggatttgcc
acaataatatttttaaattttacataatggctaatcaacttttgtatcca
tggattgaaatttttgttactattatgtaacaaaattgtgtggctactgt
cttgttgttataaacagttggtacactggtcttcagttggacttcctact
gggagcagatgtctcctgaactgtatggtctgccatgatcgcctttctca
cgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46095144_46096262
seq2: B6Ng01-339F08.b_47_1152

seq1  GAATTCTCTATCTACCAAAACTAAAGAGGCATGTATGACTCAACCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCTACCAAAACTAAAGAGGCATGTATGACTCAACCTGAGA  50

seq1  ACTTTATCCCTAATATAGACCTAAAAGAATATGTCAGTCTAAACATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATCCCTAATATAGACCTAAAAGAATATGTCAGTCTAAACATCAAG  100

seq1  CACATATATGTCTGAAACATCGTAGAGCAACACCACCTACAATGCCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATGTCTGAAACATCGTAGAGCAACACCACCTACAATGCCTAAC  150

seq1  TTGGAACACCTCTAAAAGTCAATCAATAGCATGAAACATAGTGGTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACACCTCTAAAAGTCAATCAATAGCATGAAACATAGTGGTGCTCT  200

seq1  TTATGATCAAATCCTCTTTAGCAATGACAGTGAGAACTACAGCTACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCAAATCCTCTTTAGCAATGACAGTGAGAACTACAGCTACATGC  250

seq1  AGCAAGAAGGAATGAATCTCATGAACAACACTGAGAGCATGAAGCCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGGAATGAATCTCATGAACAACACTGAGAGCATGAAGCCAAGC  300

seq1  CCTCGATAGTATATATTAATGCAAAAGTCATAAACATGCAAATCTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGATAGTATATATTAATGCAAAAGTCATAAACATGCAAATCTAAATG  350

seq1  ACAGTATTAGAAACAACAACAACAAAATAATGGTGCCGTTTGTCAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTAGAAACAACAACAACAAAATAATGGTGCCGTTTGTCAATACA  400

seq1  ACCGTATAGTCCCTAGATATCCTTGTGTATAGGGACCAGCAACCCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATAGTCCCTAGATATCCTTGTGTATAGGGACCAGCAACCCTAGAA  450

seq1  ATACCAAGATCAAGGAATGCTCACATCACATAGATAAAACGGTATGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGATCAAGGAATGCTCACATCACATAGATAAAACGGTATGGTGA  500

seq1  TTGCTTATAATCTACAAATCCTCCAACATACTCTACAGTATTTCTAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATAATCTACAAATCCTCCAACATACTCTACAGTATTTCTAGAAG  550

seq1  ACTAATAATCTAGTTCAATACAAATGCTATGCAAATAGTTGCAAATATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAATCTAGTTCAATACAAATGCTATGCAAATAGTTGCAAATATGC  600

seq1  ATTATTTGGAAAATAATGACAAGGAGAAAAGTCGTATACATTTAATACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGGAAAATAATGACAAGGAGAAAAGTCGTATACATTTAATACAA  650

seq1  ATGTAATTTTATATTTTTGTTTGTTTTTACTTATTTTTTATATAATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTTATATTTTTGTTTGTTTTTACTTATTTTTTATATAATTGCT  700

seq1  AAACTGAAGAGGCATAAGTTTTTTCTACATTTTAATTATCTTGCTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAGAGGCATAAGTTTTTTCTACATTTTAATTATCTTGCTATTAT  750

seq1  AAAGGTCATTTCTTTTTTTTTTTTTTTTTTGAGGTACTGTACTTTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCATTTCTTTTTTTTTTTTTTTTTTGAGGTACTGTACTTTTACTT  800

seq1  AGGAAACCATCTAGTTTCATTAAATTGTCATGTATTATACATAAATGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCATCTAGTTTCATTAAATTGTCATGTATTATACATAAATGCAC  850

seq1  CTGAGGCCGTCAAGTCACCAAAGTTGAATCTATTGTTGCAATGTTGCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCGTCAAGTCACCAAAGTTGAATCTATTGTTGCAATGTTGCTAT  900

seq1  TTTGATTACATTTAAAAATGGTTTTAAATATATTTAAATAGAGAGTAATT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGATTACATTTAAAAATGGTTTTAAATATATTT-AATAGAGAGTAATT  949

seq1  GAAATAT-GAATAAATAA-GATATTATTTTTACAAAAGTAATTCAAT-GG  997
      ||||||| |||||||||| |||||||||||||||||||| ||||||| ||
seq2  GAAATATGGAATAAATAAGGATATTATTTTTACAAAAGT-ATTCAATGGG  998

seq1  AAAGTGGATAAGAAACAGATGCAAGATAACAGGCCAGGAGGATAGCATAT  1047
      ||||||||| |||||| |||||||||||||||| ||||| ||||||||||
seq2  AAAGTGGAT-AGAAAC-GATGCAAGATAACAGG-CAGGAAGATAGCATAT  1045

seq1  TAACTAGATAGCAAGTATATAGGGTTTGGTTAAACTAGTCTCTCCACTCC  1097
        |||||||||| |||||||| ||  | ||||| |||||||||||||| |
seq2  --ACTAGATAGC-AGTATATACGG--TCGTTAACCTAGTCTCTCCACT-C  1089

seq1  TGTACATTTACAATTTTCATTA  1119
      |||||   |||||  |||||||
seq2  TGTAC---TACAA--TTCATTA  1106


seq1: chr12_46195980_46197077
seq2: B6Ng01-339F08.g_67_1169 (reverse)

seq1  CCGTGAGGAGAAGGCGATCCAAAGGCAGACAATACAG-TCA-GAGACAAT  48
      |||||||   |||||||||  | ||||||| |||||| ||| ||||||  
seq2  CCGTGAG--AAAGGCGATC--ATGGCAGACCATACAGTTCAGGAGACA--  44

seq1  CCTGCTCCCCAGTAAGGAGTCCCAACTGAAGACCCAGGTGTA-CAACTG-  96
       ||||| ||||||| | ||| |||||||||||||   ||||| |||||| 
seq2  TCTGCT-CCCAGTAGGAAGT-CCAACTGAAGACC--AGTGTACCAACTGT  90

seq1  TTATAACAAACAGACAGTAG-CACACAATTTTGTTACAT-ATAGTAAC-A  143
      |||||||||  ||||||||| |||||||||||||||||| |||||||| |
seq2  TTATAACAACAAGACAGTAGCCACACAATTTTGTTACATAATAGTAACAA  140

seq1  AAATTTCATCCCATGGATAC-AAAGTTGATTAAGCA-TATGT-AAATTTA  190
      ||||||||  |||||||||| |||||||||||  || ||||| |||||||
seq2  AAATTTCAATCCATGGATACAAAAGTTGATTAGCCATTATGTAAAATTTA  190

seq1  AAAATA-TATTGTGGCAAATCC-GTATAAGAA--CAAAAATCACATGATA  236
      |||||| ||||||||||||||| |||||||||   |||||||||||||||
seq2  AAAATATTATTGTGGCAAATCCGGTATAAGAAACAAAAAATCACATGATA  240

seq1  ACC-TTAACAGACACAGTAATAATCTTAATAGACATATAGTCAAAACAAA  285
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACAGACACAGTAATAATCTTAATAGACATATAGTCAAAACAAA  290

seq1  CTAAAAGGGGGTTACTATATGTTAATTCTTATGAAATGAACTTATAAAAT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGGGGTTACTATATGTTAATTCTTATGAAATGAACTTATAAAAT  340

seq1  TATATTTATTAAAAATAAGCCATCTTTTGAAATCAGTTGGATAATTTCAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTAAAAATAAGCCATCTTTTGAAATCAGTTGGATAATTTCAT  390

seq1  TTTCAAATATTTTAGTTAGAGTTTCTAGTGTAAATGTTCTTAAAGGAATA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATATTTTAGTTAGAGTTTCTAGTGTAAATGTTCTTAAAGGAATA  440

seq1  TGTATAACTAGCAGAGCGTTGACACTCTATTATTGAAACAGTTCTCCATA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACTAGCAGAGCGTTGACACTCTATTATTGAAACAGTTCTCCATA  490

seq1  ATATCTGCCCATTTATTTATTATTTTTTCAATGATTATAACCACTTAGAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCCCATTTATTTATTATTTTTTCAATGATTATAACCACTTAGAA  540

seq1  AATGTTTAGGTTTTTATGTAATTCTCACAAGAATTTAGAATTATGAACAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGGTTTTTATGTAATTCTCACAAGAATTTAGAATTATGAACAA  590

seq1  ACTGAAAATTTCACAGTCAAGTTACATAAAAAATAATCCTTGAACTTTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATTTCACAGTCAAGTTACATAAAAAATAATCCTTGAACTTTGC  640

seq1  AAAAATTCAGAGACTGCAGATCATCCAATGAAAAAAATCCCCTATAAATG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAGAGACTGCAGATCATCCAATGAAAAAAATCCCCTATAAATG  690

seq1  TATTAGCTGTAATATACTAGAATTTCATTATTTCTGTGTGCAAAGCTTTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCTGTAATATACTAGAATTTCATTATTTCTGTGTGCAAAGCTTTT  740

seq1  CATCATCAAGTTAATGTGTAGCACTGTGTAAAAATTGGCACAACATATTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAAGTTAATGTGTAGCACTGTGTAAAAATTGGCACAACATATTG  790

seq1  TTCTGTAAATGGCTTTCATTACTTAGCATTATGTCTCAACCTGTCTCAGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAATGGCTTTCATTACTTAGCATTATGTCTCAACCTGTCTCAGT  840

seq1  AGTGGTTATTTGAAGTTGTATCATCATCTTCAACCTTTCTCAGATTTTAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTATTTGAAGTTGTATCATCATCTTCAACCTTTCTCAGATTTTAT  890

seq1  CCCCTTTATGAGAACATTCAGTCTATTTCTAGTTTTATTTCTTTCCTATT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTATGAGAACATTCAGTCTATTTCTAGTTTTATTTCTTTCCTATT  940

seq1  ATGGGTAACTACTCCGATGAATACTGTTGGTAGCACTGGGGCAGAGTTAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAACTACTCCGATGAATACTGTTGGTAGCACTGGGGCAGAGTTAA  990

seq1  TCCTGAGATTCACAATAGAAAAACAAGTTCCACAATTTTGAGCCAAATTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGATTCACAATAGAAAAACAAGTTCCACAATTTTGAGCCAAATTT  1040

seq1  GAACGATGCTTTAACTAAATACTGATCAGGCTAGAATCTGGTCAGGTTTA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATGCTTTAACTAAATACTGATCAGGCTAGAATCTGGTCAGGTTTA  1090

seq1  TACTCTGGAATTC  1098
      |||||||||||||
seq2  TACTCTGGAATTC  1103


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