BAC Information

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BAC

Clone NameB6Ng01-339L17
Chromosome12 (Build37)17 (Build37)
Map Location 67,577,722 - 67,578,39944,519,565 - 44,519,697
singlet/doubletsingletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L17.bB6Ng01-339L17.g
ACCGA123644GA123645
length678206
definitionB6Ng01-339L17.b B6Ng01-339L17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,577,722 - 67,578,399)(44,519,565 - 44,519,697)
sequence
gaattcagcttttgaaacagagattcttctcaaagtgagtgtaatttgca
gttcatttatatcatccaccctggaaaacataaaattcaatgttccgtga
cattctcttgatttcatacttgaaagttgctaccaaagacatatattttt
ataaaagcttgaaatgccaaatatgacatattctttggagaaaacaccta
aacattttttgtaatctctatttttctacagaataaatctatccccaaga
ccttggtcttaatgccatcaataaatctactatgacctatgcattttaat
ttgcagttacaatttagtgcataaacagtatagtgtaataaatggagaac
caatcagttcaaaagcactctatatattctcaatagcaaactatcacaaa
aactaaaaccaagcaactaggacagcaccattagacatgccaaagtagac
agggaaaatcccataaaacatcaaccctacaaagacctacaggtaactga
gaaagctggaagcaggcagaagaggtggtcttctctatggaagatcacac
aagtaggttgtccaaggccaaatgtacagttctgaaaaagaagcatacaa
ctaacatgcatagtgagcagtttatatatagtaacatatatgtatgtata
tgtgtgtatgtgtgtgtgtgtatgtgtg

tttgtatagttctataccccacttttgattgggtcatttgtgataaccag
aagctggaaacaacccagatgtcccacaacagaagaatggatacagaaaa
tgtggttcatttacacaatggaatactactcagatattaaaaatgaggac
atcatgagttttgcaggcaaatggatggaactagaaaatatcctgagtga
gataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_67577722_67578399
seq2: B6Ng01-339L17.b_45_722 (reverse)

seq1  CACACATACACACACACACATACACACATATACATACATATATGTTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACACACATACACACATATACATACATATATGTTACTA  50

seq1  TATATAAACTGCTCACTATGCATGTTAGTTGTATGCTTCTTTTTCAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACTGCTCACTATGCATGTTAGTTGTATGCTTCTTTTTCAGAAC  100

seq1  TGTACATTTGGCCTTGGACAACCTACTTGTGTGATCTTCCATAGAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATTTGGCCTTGGACAACCTACTTGTGTGATCTTCCATAGAGAAGA  150

seq1  CCACCTCTTCTGCCTGCTTCCAGCTTTCTCAGTTACCTGTAGGTCTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTCTGCCTGCTTCCAGCTTTCTCAGTTACCTGTAGGTCTTTGT  200

seq1  AGGGTTGATGTTTTATGGGATTTTCCCTGTCTACTTTGGCATGTCTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGATGTTTTATGGGATTTTCCCTGTCTACTTTGGCATGTCTAATG  250

seq1  GTGCTGTCCTAGTTGCTTGGTTTTAGTTTTTGTGATAGTTTGCTATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCTAGTTGCTTGGTTTTAGTTTTTGTGATAGTTTGCTATTGAG  300

seq1  AATATATAGAGTGCTTTTGAACTGATTGGTTCTCCATTTATTACACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGAGTGCTTTTGAACTGATTGGTTCTCCATTTATTACACTATA  350

seq1  CTGTTTATGCACTAAATTGTAACTGCAAATTAAAATGCATAGGTCATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATGCACTAAATTGTAACTGCAAATTAAAATGCATAGGTCATAGT  400

seq1  AGATTTATTGATGGCATTAAGACCAAGGTCTTGGGGATAGATTTATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTGATGGCATTAAGACCAAGGTCTTGGGGATAGATTTATTCTG  450

seq1  TAGAAAAATAGAGATTACAAAAAATGTTTAGGTGTTTTCTCCAAAGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAGAGATTACAAAAAATGTTTAGGTGTTTTCTCCAAAGAATA  500

seq1  TGTCATATTTGGCATTTCAAGCTTTTATAAAAATATATGTCTTTGGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATTTGGCATTTCAAGCTTTTATAAAAATATATGTCTTTGGTAGC  550

seq1  AACTTTCAAGTATGAAATCAAGAGAATGTCACGGAACATTGAATTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAAGTATGAAATCAAGAGAATGTCACGGAACATTGAATTTTATG  600

seq1  TTTTCCAGGGTGGATGATATAAATGAACTGCAAATTACACTCACTTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGGTGGATGATATAAATGAACTGCAAATTACACTCACTTTGAG  650

seq1  AAGAATCTCTGTTTCAAAAGCTGAATTC  678
      ||||||||||||||||||||||||||||
seq2  AAGAATCTCTGTTTCAAAAGCTGAATTC  678


seq1: chr17_44519565_44519697
seq2: B6Ng01-339L17.g_148_277 (reverse)

seq1  GTTACCTCACTCAGGATGATATCCTCCAGATCCATCTATTTGCCTATGAA  50
      |||| |||||||||   |||||  || || |||||| ||||||||   ||
seq2  GTTATCTCACTCAG---GATATTTTCTAGTTCCATCCATTTGCCTGCAAA  47

seq1  TTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA  100
        |||| |  || |  ||||||||| |||||||||| |||||||||||||
seq2  ACTCATGATGTCCTCATTTTTAATATCTGAGTAGTATTCCATTGTGTAAA  97

seq1  TGTATCACATTTTCTGTATCCATTCCTCTGTTG  133
      || | |||||||||||||||||||| |||||||
seq2  TGAACCACATTTTCTGTATCCATTCTTCTGTTG  130


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