BAC Information

Click to search

BAC

Clone NameB6Ng01-340B19
Chromosome12 (Build37)
Map Location 59,682,832 - 59,683,993
singlet/doubletsinglet
Overlap genenone
Upstream gene4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340B19.bB6Ng01-340B19.g
ACCGA123915GA123916
length1,1371,151
definitionB6Ng01-340B19.b B6Ng01-340B19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgagttaattttatatccagctacttcattgaagctgtttat
caggtttaggagttctctggtggaatttttagggtcatgtatatactatc
atatcatctgcaaaaagtgatattttgacttcttccttttcaatttttat
ccccttgatctccttttgttctcaaattgctctggctaggacttcaagta
caatgttgaataggtagagagaaagtgggtatccttgtctagtccctgat
tttagtgggattgcttctagcttcttaccatttactttgatgttggctac
tggtttgctgtagatttgcttttattgtgtttaggtatgggccttgaatt
cctgatctttccaagacttttatcatgaatgggtgttggattttgtcaaa
tgctttctccgcatctaatgagattatcatgtggtttttgtcttttaggt
tgtttataaagtggattatgttgatggatttccatatattaaaccatccc
tgcatgcctggaatgaaacctacttggtcaggatggatgattgttttgat
attttcttggattcgattattgagaactttattaagtatttttgcatcta
tattgataagggacattggtctgaagttctctatctttgttgagtctttc
tgtggtttagatatcagagtaattgtggcttcatagaatgaattgggtag
gataacttctgcttctattttgtgggatagtttgagaagaagtaaaatta
ggtctcctttgaaggtctgatagaagaactctgcactaaacccgtctggt
cctgggctttttttggttgggagactattaatgactgcttctatttcttt
aggggatataggactgtttagatcattaacctgatcctgatttaacttgg
gtacctggtacctgtctagacatttgtccatttcatccaggttttccagt
tttgtttttgagtatagccttttgtagagtatctgatggtgttttggatt
tctcagaatctgtggttatggtcctcccttgtatttctgattttgtatta
ggatgggtttccttaatgcccttcaaggtgagtctggcctaaggttatct
catcatgttgagtgtactcaaaaaactagccttctgt
gaattcaaacagctcagctacaagggaaagatccccagtcttaaaatgga
cacatgatctaaacagccattttcccaataaagacacacaaatgggcaaa
tgggcaatagctaccttaaacggtgcttcgtatcactgttgactacgtag
gactgggcacacttcatggtgacagagcactagactggcattttcaatgg
actcagtttgcactcctgagccaatacataaataaaaactaagaaaacta
cagagagagagagagagagagagagagagagagagagagagagagagaga
ttgccctaagcacagtaaaatggtttttaccaaaaagatgtaagagttgg
caaaatatgaacaccaaccctgtcggctatgggtgagaatataaatttgt
ataatcattatgtgaaatagtgtgaaggttgctcataaaaataacaaaca
gtcatgcaatctgcgagcactatttctgggtatatgcccaaggaaaatga
gatcagtaagtctgaaagctgtctgtacttggtccaatgtgtatagcagc
attagtcacagatgccaaggtacagaatcaacccagatgtccccaaaatg
gatgaatgcacaaagatggtgtgtgtacataataagaaataactcactcc
tgaggggtagagaaagttctgacatttgcaacaagataggtaaacctgaa
gggcataaaccaagtgaaaataagccaactacaaaaggagaaatatttcc
tggtctcctgcaagcatgcaacctgaaaatatacacaagtttgagaataa
tccatagaacctaaagacgagcagaaatggaaagctgaggatgaggcagt
gtaagaccagctgaacagggtaagtatctgagatttaataccttgtatga
tattgagttaatacccatctttcaaaattattcacaactagaaacattaa
gttcatgaggtaagggatatgttaacttattttattatcatacatgtgta
catttccaaaccatcacactgtaaatatgcataaatttaatatatttaaa
tatttacatataaatatggctattttgtagtaaaaataaggcaaaaaaaa
accttgaaaccagctagttatttttgaataattaataaccttatttagat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59682832_59683993
seq2: B6Ng01-340B19.g_64_1214

seq1  GAATTCAAACAGCTCAGCTACAAGGGAAAGATCCCCAGTCTTAAAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGCTCAGCTACAAGGGAAAGATCCCCAGTCTTAAAATGGA  50

seq1  CACATGATCTAAACAGCCATTTTCCCAATAAAGACACACAAATGGGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATCTAAACAGCCATTTTCCCAATAAAGACACACAAATGGGCAAA  100

seq1  TGGGCAATAGCTACCTTAAACGGTGCTTCGTATCACTGTTGACTACGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATAGCTACCTTAAACGGTGCTTCGTATCACTGTTGACTACGTAG  150

seq1  GACTGGGCACACTTCATGGTGACAGAGCACTAGACTGGCATTTTCAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGCACACTTCATGGTGACAGAGCACTAGACTGGCATTTTCAATGG  200

seq1  ACTCAGTTTGCACTCCTGAGCCAATACATAAATAAAAACTAAGAAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTGCACTCCTGAGCCAATACATAAATAAAAACTAAGAAAACTA  250

seq1  CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  300

seq1  TTGCCCTAAGCACAGTAAAATGGTTTTTACCAAAAAGATGTAAGAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTAAGCACAGTAAAATGGTTTTTACCAAAAAGATGTAAGAGTTGG  350

seq1  CAAAATATGAACACCAACCCTGTCGGCTATGGGTGAGAATATAAATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGAACACCAACCCTGTCGGCTATGGGTGAGAATATAAATTTGT  400

seq1  ATAATCATTATGTGAAATAGTGTGAAGGTTGCTCATAAAAATAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATTATGTGAAATAGTGTGAAGGTTGCTCATAAAAATAACAAACA  450

seq1  GTCATGCAATCTGCGAGCACTATTTCTGGGTATATGCCCAAGGAAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCAATCTGCGAGCACTATTTCTGGGTATATGCCCAAGGAAAATGA  500

seq1  GATCAGTAAGTCTGAAAGCTGTCTGTACTTGGTCCAATGTGTATAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTAAGTCTGAAAGCTGTCTGTACTTGGTCCAATGTGTATAGCAGC  550

seq1  ATTAGTCACAGATGCCAAGGTACAGAATCAACCCAGATGTCCCCAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCACAGATGCCAAGGTACAGAATCAACCCAGATGTCCCCAAAATG  600

seq1  GATGAATGCACAAAGATGGTGTGTGTACATAATAAGAAATAACTCACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGCACAAAGATGGTGTGTGTACATAATAAGAAATAACTCACTCC  650

seq1  TGAGGGGTAGAGAAAGTTCTGACATTTGCAACAAGATAGGTAAACCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTAGAGAAAGTTCTGACATTTGCAACAAGATAGGTAAACCTGAA  700

seq1  GGGCATAAACCAAGTGAAAATAAGCCAACTACAAAAGGAGAAATATTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAACCAAGTGAAAATAAGCCAACTACAAAAGGAGAAATATTTCC  750

seq1  TGGTCTCCTGCAAGCATGCAACCTGAAAATATACACAAGTTTGAGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCTGCAAGCATGCAACCTGAAAATATACACAAGTTTGAGAATAA  800

seq1  TCCATAGAACCTAAAGACGAGCAGAAATGGAAAGCTGAGGATGAGGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAACCTAAAGACGAGCAGAAATGGAAAGCTGAGGATGAGGCAGT  850

seq1  GTAAGACCAGCTGAACAGGGTAAGTATCTGAGATTTAATACCTTGTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACCAGCTGAACAGGGTAAGTATCTGAGATTTAATACCTTGTATGA  900

seq1  TATTGAGTTAATAACCATCTTTCAAAATTATTCACAACTAGAAACATTAA  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTAATACCCATCTTTCAAAATTATTCACAACTAGAAACATTAA  950

seq1  GTTCATGAGGTAAGGGATATGTTAACTTATTTTAATTATCATACAATGTG  1000
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GTTCATGAGGTAAGGGATATGTTAACTTATTTT-ATTATCATAC-ATGTG  998

seq1  TACATTTTCCAAACCATCACACTGTAAATATGCATAAATTT-ATATATTT  1049
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACA-TTTCCAAACCATCACACTGTAAATATGCATAAATTTAATATATTT  1047

seq1  AAATATTTACATATAAATATGGCTATTTGTTAAGTAAAAAATAAGGCAAA  1099
      |||||||||||||||||||||||||||| |  ||| ||||||||||| ||
seq2  AAATATTTACATATAAATATGGCTATTT-TGTAGT-AAAAATAAGGC-AA  1094

seq1  AAAAAAACCTTGAACCACAGCTAGTTTATTTTTTAAAATAAATTAATAAA  1149
      |||||||||||||| | ||||||| |||||||| ||    ||||||||| 
seq2  AAAAAAACCTTGAAAC-CAGCTAG-TTATTTTTGAA---TAATTAATAAC  1139

seq1  CTTATTTTAGATG  1162
      |||| ||||||||
seq2  CTTA-TTTAGATG  1151