BAC Information

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BAC

Clone NameB6Ng01-341A21
Chromosome12 (Build37)
Map Location 36,905,739 - 37,028,428
singlet/doubletdoublet
Overlap geneAnkmy2, 1700108M19Rik
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2
Downstream geneSostdc1, 4930579E17Rik, LOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A21.bB6Ng01-341A21.g
ACCGA124558GA124559
length927918
definitionB6Ng01-341A21.b B6Ng01-341A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,905,739 - 36,906,668)(37,027,841 - 37,028,428)
sequence
gaattcagtttagtatcccttctaagcttttcctttcggattctaaagaa
gtttgaccgtcagttcatccatgcagtgtaaaaattatctcagacctgca
tctcatcgttgtagtaaaatgctggactggaactttgcttttcagagaac
tagaggacagcctggtggggaagcctggcaaagggccgtctctgcagtag
cagcaggagagcaaacagctgcttgatatgtggtaccaaccaggaagcag
acggcagattggcagaaaaccatgctagaacccccaaggctcaccctgag
ttaccctctgtctcaaagatcccacagcctccccaaacagtgcctccagc
ttagaaccaagtgtgaaacacatgagctggtaggagacgatttagcttga
catgtaacagttgaattcccctactccatagcatttactttcttattaat
aatgctatctagttgtatctaatcagaatttttaaattaaagggttaaaa
cctttttaaaaataatttcatatggaatctaaaattatcaagtaaaatta
aatttacaaagataaacttttatgccattctaataagtgattagcaagtg
aattaggttagacttgtcctctgaccatgtcattgttaggttgcagatat
tttatggatggaaatgtactgttctaggtgctcttctgactgtctagtta
ggagctggctgtagtagttattgtttgccttccaaagacaaaatagctga
ctaaaacaatttctgaaaggagggtagggttgacttgggctcatgatttg
aggagatattcagttcatcacgttggggaagtgatgagatgggaggtgag
gctggtcacactgtccacagccagaaaagcatggattctgaggctcagca
tcctgttgtgttagtgtggcatttgtt

gaattccatatagaactgatttgtgccctgagcgctgtgtaaaacactcc
ttgatggatttctttatgacacgcgttgctgttattgattttactgttct
ttttgacgtactgggaattgaacacagaaccttatttatgcaaaatgtgc
actctaccactgagctaaatctcttccctgcacatatattttttttgtga
gtatatttttagtaggcaacatttcttttacgttttattattattgcacg
tattgtttgtgtaatatattgtgtgtgaatataggtgcgctcacacgaga
gctcacaggtggatgtcagaggacaacttttggcggcaatcaaacacggg
gtgtcaaggttgtatggcaagttcttctacccagcagccttcctcccaga
tgacattattatattttcatactcatatatcattttgccttgaaattgct
catctccaatgccatcatgtgatgtttggaaatggtatcactataaccca
acagtcagtgggtgacacagtgtggtatgagtttgccttgccactctttg
ttggtcctcgttgggttttgctgatgctgatcttcactgaggatgctgtt
tggtactggtttgccttgccactctttgctgatcatcatttgttgtgact
ttgtaaagagaaacacaaggaaaaacttgccgtggaggtatgagggcttc
ttgcctcttctgcaggcttaggccaattgacagagcctcaaggtttcttc
tggatcaaactgccattttttgatttcatgaatgacgtttgcaagtcatt
ctagctaccactgctgatttcattgtgaaccggaaccactgatatcatga
catagcagactggattcaccacaaaggacttattttcttaaacaggtcca
catcctccttttgtccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36905739_36906668
seq2: B6Ng01-341A21.b_45_971

seq1  GAATTCAGTTTAGTATCCCTTCTAAGCTTTTCCTTTCGGATTCTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTAGTATCCCTTCTAAGCTTTTCCTTTCGGATTCTAAAGAA  50

seq1  GTTTGACCGTCAGTTCATCCATGCAGTGTAAAAATTATCTCAGACCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCGTCAGTTCATCCATGCAGTGTAAAAATTATCTCAGACCTGCA  100

seq1  TCTCATCGTTGTAGTAAAATGCTGGACTGGAACTTTGCTTTTCAGAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCGTTGTAGTAAAATGCTGGACTGGAACTTTGCTTTTCAGAGAAC  150

seq1  TAGAGGACAGCCTGGTGGGGAAGCCTGGCAAAGGGCCGTCTCTGCAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACAGCCTGGTGGGGAAGCCTGGCAAAGGGCCGTCTCTGCAGTAG  200

seq1  CAGCAGGAGAGCAAACAGCTGCTTGATATGTGGTACCAACCAGGAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAGAGCAAACAGCTGCTTGATATGTGGTACCAACCAGGAAGCAG  250

seq1  ACGGCAGATTGGCAGAAAACCATGCTAGAACCCCCAAGGCTCACCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGATTGGCAGAAAACCATGCTAGAACCCCCAAGGCTCACCCTGAG  300

seq1  TTACCCTCTGTCTCAAAGATCCCACAGCCTCCCCAAACAGTGCCTCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCTGTCTCAAAGATCCCACAGCCTCCCCAAACAGTGCCTCCAGC  350

seq1  TTAGAACCAAGTGTGAAACACATGAGCTGGTAGGAGACGATTTAGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCAAGTGTGAAACACATGAGCTGGTAGGAGACGATTTAGCTTGA  400

seq1  CATGTAACAGTTGAATTCCCCTACTCCATAGCATTTACTTTCTTATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACAGTTGAATTCCCCTACTCCATAGCATTTACTTTCTTATTAAT  450

seq1  AATGCTATCTAGTTGTATCTAATCAGAATTTTTAAATTAAAGGGTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTATCTAGTTGTATCTAATCAGAATTTTTAAATTAAAGGGTTAAAA  500

seq1  CCTTTTTAAAAATAATTTCATATGGAATCTAAAATTATCAAGTAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTAAAAATAATTTCATATGGAATCTAAAATTATCAAGTAAAATTA  550

seq1  AATTTACAAAGATAAACTTTTATGCCATTCTAATAAGTGATTAGCAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAAAGATAAACTTTTATGCCATTCTAATAAGTGATTAGCAAGTG  600

seq1  AATTAGGTTAGACTTGTCCTCTGACCATGTCATTGTTAGGTTGCAGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTTAGACTTGTCCTCTGACCATGTCATTGTTAGGTTGCAGATAT  650

seq1  TTTATGGATGGAAATGTACTGTTCTAGGTGCTCTTCTGACTGTCTAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGATGGAAATGTACTGTTCTAGGTGCTCTTCTGACTGTCTAGTTA  700

seq1  GGAGCTGGCTGTAGTAGTTATTGTTTGCCTTCCAAAGACAAAATAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGCTGTAGTAGTTATTGTTTGCCTTCCAAAGACAAAATAGCTGA  750

seq1  CTAAAACAATTTCTGAAAGGAGGGTAGGGTTGACTTGGGCTCATGATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAATTTCTGAAAGGAGGGTAGGGTTGACTTGGGCTCATGATTTG  800

seq1  AGGAGATATTCAGTTCATCACGTTGGGGAAGTGATGAGATGGGAGGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATTCAGTTCATCACGTTGGGGAAGTGATGAGATGGGAGGTGAG  850

seq1  GCTGGTCACACTGTCCACAGCCAGAAAAGCAATGGATTCTGAGGCTCAGC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTGGTCACACTGTCCACAGCCAGAAAAGC-ATGGATTCTGAGGCTCAGC  899

seq1  ATCCTGTTGTTGTTAGTGGTGGCATTTGTT  930
      ||||||||| ||||||| ||||||||||||
seq2  ATCCTGTTG-TGTTAGT-GTGGCATTTGTT  927


seq1: chr12_37027841_37028428
seq2: B6Ng01-341A21.g_67_654 (reverse)

seq1  AGTGAAGATCAGCATCAGCAAAACCCAACGAGGACCAACAAAGAGTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATCAGCATCAGCAAAACCCAACGAGGACCAACAAAGAGTGGCA  50

seq1  AGGCAAACTCATACCACACTGTGTCACCCACTGACTGTTGGGTTATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACTCATACCACACTGTGTCACCCACTGACTGTTGGGTTATAGTG  100

seq1  ATACCATTTCCAAACATCACATGATGGCATTGGAGATGAGCAATTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTTCCAAACATCACATGATGGCATTGGAGATGAGCAATTTCAAG  150

seq1  GCAAAATGATATATGAGTATGAAAATATAATAATGTCATCTGGGAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGATATATGAGTATGAAAATATAATAATGTCATCTGGGAGGAAG  200

seq1  GCTGCTGGGTAGAAGAACTTGCCATACAACCTTGACACCCCGTGTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGTAGAAGAACTTGCCATACAACCTTGACACCCCGTGTTTGAT  250

seq1  TGCCGCCAAAAGTTGTCCTCTGACATCCACCTGTGAGCTCTCGTGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCCAAAAGTTGTCCTCTGACATCCACCTGTGAGCTCTCGTGTGAGC  300

seq1  GCACCTATATTCACACACAATATATTACACAAACAATACGTGCAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTATATTCACACACAATATATTACACAAACAATACGTGCAATAATA  350

seq1  ATAAAACGTAAAAGAAATGTTGCCTACTAAAAATATACTCACAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACGTAAAAGAAATGTTGCCTACTAAAAATATACTCACAAAAAAAA  400

seq1  TATATGTGCAGGGAAGAGATTTAGCTCAGTGGTAGAGTGCACATTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGCAGGGAAGAGATTTAGCTCAGTGGTAGAGTGCACATTTTGCA  450

seq1  TAAATAAGGTTCTGTGTTCAATTCCCAGTACGTCAAAAAGAACAGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGTTCTGTGTTCAATTCCCAGTACGTCAAAAAGAACAGTAAAA  500

seq1  TCAATAACAGCAACGCGTGTCATAAAGAAATCCATCAAGGAGTGTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACAGCAACGCGTGTCATAAAGAAATCCATCAAGGAGTGTTTTAC  550

seq1  ACAGCGCTCAGGGCACAAATCAGTTCTATATGGAATTC  588
      ||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCTCAGGGCACAAATCAGTTCTATATGGAATTC  588


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