BAC Information

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BAC

Clone NameB6Ng01-341I09
Chromosome12 (Build37)
Map Location 34,327,791 - 34,328,311
singlet/doubletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341I09.bB6Ng01-341I09.g
ACCGA124882GA124883
length9831,043
definitionB6Ng01-341I09.b B6Ng01-341I09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacgctcttgataccaagtgttcgtgcttgcatgcgcatgtaag
tgctctttccctgttaactttgcctggcacactcagtgtggttcttcatt
ttgttttgttttttttttgttttgtttcctatgagattttatcattgaga
ctttttactcttatctctgaaacacagaattaccttactataattatttg
cgacttactgtatgtcctagatttctcaaggggtactggggattaattca
gcctctatttgtgggctcagcaacatgattaatgacctagcaagcaactg
ctttgaatgttagtgtctactgactagtgtgatccctgaagtcagctgaa
gacctcaaagatggcatgagacagtgaggaacagttagactctttctgtt
aatgtttgtgtgcatggtttattaaaaaacagatgaagttagggtgaagt
tcaaccttacaaaagaaaaaaaaacaaaccaagtttaagaaggttatctc
cttttattattaatttttaattaggtattttcttcatttacatttccaat
cctatcccaaaagtcccccataccctccccccaccattcccctacccacc
cattctcactttttggccctggcgttcccctgtactggggcatataaagt
ttgcaagaccaaggggcctctcttcccaatgatggccgactaggccatct
tctgctacatatgcagctagagacaagagctccagggtactggttagttc
atattgttgttccacctatagggttgcagttccctttagctccttgggta
ctttctctagctcctccattgggggccctgtggtccatccaatagctgac
tgtgagcatccacttctgtgtttgctaggccccggcatagtctcacaaga
gacagctattctgggttctttcagcaaatcttgctagtgtatgcaatggt
gtcagtgttggaggctgatatgggatggatccc
gaattctgtgctaaaattacctagccctgtgctgttttgattgggagact
tttaatgattgtatctatttccatagagcttataggactatttaaatagt
ttacatgatcctgatttaactttgctaagtgatatttagctagaaaaatc
atctactttgtttagatttcccaactgtgtgtagttcagccttttgaagt
aagatgtagtgattctttttattccctcagtgtctgttgcattgtccccc
cttcatttctgatttttaaaatttgtatattgtctccctgcttttaatta
gttgtctcagattttgtttatcttgctgattttctcaatgaaccagttct
gggttttgttgattctttatattattctctttgtttcttattgattgatt
tcagtcttgagtttgattatttctttcaatctacccctcttgtgtgtatt
tacttctttttgttctagagctctcaggtgtgttttaaaattgctagtat
gcgatctttccaatttatttatggaggcacttagtgctatgaactttcct
cttagcatggctttcgttgtatctcataagtttgggtatgttgtgccttc
attttcattgaattctagaaagtctttaactttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctctctctctctctc
tctctctctctctctctctctctctctctctccccctccccctccctccc
ctctctgtctttctccctctctgtctgtctttctttctttctctctttct
tctttctttctttcttttctttctttctttctttcttttctttcttttct
tccttctttcttccctgacccaatgattattccatagagagtggtctgtt
tccatgattttgacgctttctgatgttctatagttgagtgcagctatact
atggtggctgatagaaacagattattcactttttatatgtgagctttttg
ggactgagtagtgactgattttgaagaaagctccatgctctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34327791_34328311
seq2: B6Ng01-341I09.b_45_565 (reverse)

seq1  ATTAAAAATTAATAATAAAAGGAGATAACCTTCTTAAACTTGGTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTAATAATAAAAGGAGATAACCTTCTTAAACTTGGTTTGTTT  50

seq1  TTTTTTCTTTTGTAAGGTTGAACTTCACCCTAACTTCATCTGTTTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTGTAAGGTTGAACTTCACCCTAACTTCATCTGTTTTTTAA  100

seq1  TAAACCATGCACACAAACATTAACAGAAAGAGTCTAACTGTTCCTCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATGCACACAAACATTAACAGAAAGAGTCTAACTGTTCCTCACTG  150

seq1  TCTCATGCCATCTTTGAGGTCTTCAGCTGACTTCAGGGATCACACTAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCCATCTTTGAGGTCTTCAGCTGACTTCAGGGATCACACTAGTC  200

seq1  AGTAGACACTAACATTCAAAGCAGTTGCTTGCTAGGTCATTAATCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACACTAACATTCAAAGCAGTTGCTTGCTAGGTCATTAATCATGTT  250

seq1  GCTGAGCCCACAAATAGAGGCTGAATTAATCCCCAGTACCCCTTGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCCACAAATAGAGGCTGAATTAATCCCCAGTACCCCTTGAGAAA  300

seq1  TCTAGGACATACAGTAAGTCGCAAATAATTATAGTAAGGTAATTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATACAGTAAGTCGCAAATAATTATAGTAAGGTAATTCTGTGT  350

seq1  TTCAGAGATAAGAGTAAAAAGTCTCAATGATAAAATCTCATAGGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATAAGAGTAAAAAGTCTCAATGATAAAATCTCATAGGAAACAA  400

seq1  AACAAAAAAAAAACAAAACAAAATGAAGAACCACACTGAGTGTGCCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAAAAACAAAACAAAATGAAGAACCACACTGAGTGTGCCAGGC  450

seq1  AAAGTTAACAGGGAAAGAGCACTTACATGCGCATGCAAGCACGAACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAACAGGGAAAGAGCACTTACATGCGCATGCAAGCACGAACACTT  500

seq1  GGTATCAAGAGCGTAGAATTC  521
      |||||||||||||||||||||
seq2  GGTATCAAGAGCGTAGAATTC  521