BAC Information

Click to search

BAC

Clone NameB6Ng01-341K10
Chromosome12 (Build37)
Map Location 90,966,816 - 91,083,345
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039261, EG666915
Downstream geneLOC100039498, LOC100039287, Dio2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341K10.bB6Ng01-341K10.g
ACCGA124972GA124973
length6661,086
definitionB6Ng01-341K10.b B6Ng01-341K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,966,816 - 90,967,481)(91,082,240 - 91,083,345)
sequence
gaattccgagaggatattttccagtagtcttgtaggcattggaaacaaat
atctattggatatgttgctgaacagacattgaattagcacccatgatttt
acattcttgattatttaagagtctttttcttctcaagtcccatgtcctaa
ctgcttgcactgaatggtctaccttcttatccgcagtaaaatctttaatg
ggtttacttgctgagtttagttcatgtttaaaaactcatggcagatacca
taagttattttacaattaacatcaaatagtaccatggaagttttttatgt
aactgaaaataaatcagtaataataataaatatgtaatcatgtatggttc
cacttcaatgctagtgcctcttgtatactttaaatctaacagcctttgtg
tgcttgcttagccatatgctataatcatacagcgtctggaatgcttccct
tagcacagaggaaggtatacattggggactcagaaatgaatagactttac
tcttacagattgcctgttcccaaaggatagaaagctaggacagacaggaa
agtaaatgattaacaaaataagaaatgaggtagtggctgaaggagactac
aggtaccaagtggaggcagagagaggggcgggagggagagaagggcagga
tgggagggggagaaag

gaattccttagagtctacatttctttgagcatctgatggcccatcactga
ctttgtgtgccactgaaattcctgacttgtttcacagcagaccttcccta
cactagtggtgctttcttacctgtttcttttaatcagagaaaccagaaat
tcaaatcacagagatccaagttttcctatagttatattttcaagcctatg
gtcttcaacttggtatgttttactttttaatcttcctatctataaaagag
ttgttaattccatttggaattatccaactgaaggtgttttgatctgctat
tagtatcatttgaatatctgggccaatgtgtattcagcacattcttatga
gctctgcgaaacaatagaaagaagacattatcaaggatcactatcaaggg
cttctattctgatcactgtcaaagacagctggcagtatttcaaactctct
cggaattaactgtcagtgtacatactttctttagagtttattttgttact
aaatcttatagccacccacccactgcaagagacaataatgtcatgaagtg
tctctatgtcagcatgagttaccaaaaggactcacaaaaagaactgttct
ctaatcacctggacacattatgatatgtaagtttatgaatgatatgtgta
tataaaaacctttgggatgtttcaagaacccttctaaatattcactgaaa
taattaaaataaaaagcatagaattggaaaaaaaaaatcatcccagcatt
ttcacatagaatgcccttccttttagaaatctattcaacagtatcaactt
ccaatagttcctccaagaagggtggggccacacactcgcacatatgtgag
aagtactaataagacttagagattattaataacaataaaatgaaaaagag
agatgaacttgggatggattgggcaggcactagagtcctagtggtggagg
aggagtggtggatcacatggtaattgtacatgtttagaatattgaaactt
aaaatagataaatattaatcagttaaaaattcataaaaagagttaaaaga
tcagctaacaaaagttattaagttatagtttcacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90966816_90967481
seq2: B6Ng01-341K10.b_50_715

seq1  GAATTCCGAGAGGATATTTTCCAGTAGTCTTGTAGGCATTGGAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGAGAGGATATTTTCCAGTAGTCTTGTAGGCATTGGAAACAAAT  50

seq1  ATCTATTGGATATGTTGCTGAACAGACATTGAATTAGCACCCATGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGGATATGTTGCTGAACAGACATTGAATTAGCACCCATGATTTT  100

seq1  ACATTCTTGATTATTTAAGAGTCTTTTTCTTCTCAAGTCCCATGTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTGATTATTTAAGAGTCTTTTTCTTCTCAAGTCCCATGTCCTAA  150

seq1  CTGCTTGCACTGAATGGTCTACCTTCTTATCCGCAGTAAAATCTTTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCACTGAATGGTCTACCTTCTTATCCGCAGTAAAATCTTTAATG  200

seq1  GGTTTACTTGCTGAGTTTAGTTCATGTTTAAAAACTCATGGCAGATACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTTGCTGAGTTTAGTTCATGTTTAAAAACTCATGGCAGATACCA  250

seq1  TAAGTTATTTTACAATTAACATCAAATAGTACCATGGAAGTTTTTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTTACAATTAACATCAAATAGTACCATGGAAGTTTTTTATGT  300

seq1  AACTGAAAATAAATCAGTAATAATAATAAATATGTAATCATGTATGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATAAATCAGTAATAATAATAAATATGTAATCATGTATGGTTC  350

seq1  CACTTCAATGCTAGTGCCTCTTGTATACTTTAAATCTAACAGCCTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAATGCTAGTGCCTCTTGTATACTTTAAATCTAACAGCCTTTGTG  400

seq1  TGCTTGCTTAGCCATATGCTATAATCATACAGCGTCTGGAATGCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTAGCCATATGCTATAATCATACAGCGTCTGGAATGCTTCCCT  450

seq1  TAGCACAGAGGAAGGTATACATTGGGGACTCAGAAATGAATAGACTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGAGGAAGGTATACATTGGGGACTCAGAAATGAATAGACTTTAC  500

seq1  TCTTACAGATTGCCTGTTCCCAAAGGATAGAAAGCTAGGACAGACAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGATTGCCTGTTCCCAAAGGATAGAAAGCTAGGACAGACAGGAA  550

seq1  AGTAAATGATTAACAAAATAAGAAATGAGGTAGTGGCTGAAGGAGACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGATTAACAAAATAAGAAATGAGGTAGTGGCTGAAGGAGACTAC  600

seq1  AGGTACCAAGTGGAGGCAGAGAGAGGGGCGGGAGGGAGAGAAGGGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCAAGTGGAGGCAGAGAGAGGGGCGGGAGGGAGAGAAGGGCAGGA  650

seq1  TGGGAGGGGGAGAAAG  666
      ||||||||||||||||
seq2  TGGGAGGGGGAGAAAG  666


seq1: chr12_91082240_91083345
seq2: B6Ng01-341K10.g_69_1154 (reverse)

seq1  TAGTGAAATGTATAACTTAATAGACCTTTTTTGTTAAACTGATCTTTTTA  50
      ||||||||  |||||||||||| ||   ||||||| | ||||||||||  
seq2  TAGTGAAA-CTATAACTTAATA-AC---TTTTGTT-AGCTGATCTTTT--  42

seq1  AACTCTTTTTAATGAAATTTTTTAACTGAATAATATTTTTATCTATTTTA  100
      |||||||||| |||||  ||||||||||| |||||  |||||||||||||
seq2  AACTCTTTTT-ATGAA--TTTTTAACTGATTAATA--TTTATCTATTTTA  87

seq1  AGTTTC-ATATTCTTAAACAATGTACATTAACCATGTGATCCACCACTCC  149
      |||||| |||||| ||||| ||||||| | ||||||||||||||||||||
seq2  AGTTTCAATATTC-TAAAC-ATGTACAATTACCATGTGATCCACCACTCC  135

seq1  TTCCTTCCACCACTAGGACCTCTAGTGCCCTGCCCAATCCATCCCAAGTT  199
      |  | ||||||||||||| |||||||| ||||||||||||||||||||||
seq2  T--CCTCCACCACTAGGA-CTCTAGTG-CCTGCCCAATCCATCCCAAGTT  181

seq1  CATCTTCTCTTTTTTCATTTTATTGTTATTAATAATCTCTAAGTCTTATT  249
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATC-TCTC-TTTTTCATTTTATTGTTATTAATAATCTCTAAGTCTTATT  229

seq1  AGTACTTCTCACATATGTGCGAGTGTGTGGCCCCACCCTTCTTGGAGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCTCACATATGTGCGAGTGTGTGGCCCCACCCTTCTTGGAGGAA  279

seq1  CTATTGGAAGTTGATACTGTTGAATAGATTTCTAAAAGGAAGGGCATTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAAGTTGATACTGTTGAATAGATTTCTAAAAGGAAGGGCATTCT  329

seq1  ATGTGAAAATGCTGGGATGATTTTTTTTTTCCAATTCTATGCTTTTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAATGCTGGGATGATTTTTTTTTTCCAATTCTATGCTTTTTATT  379

seq1  TTAATTATTTCAGTGAATATTTAGAAGGGTTCTTGAAACATCCCAAAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTTCAGTGAATATTTAGAAGGGTTCTTGAAACATCCCAAAGGT  429

seq1  TTTTATATACACATATCATTCATAAACTTACATATCATAATGTGTCCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATACACATATCATTCATAAACTTACATATCATAATGTGTCCAGG  479

seq1  TGATTAGAGAACAGTTCTTTTTGTGAGTCCTTTTGGTAACTCATGCTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGAGAACAGTTCTTTTTGTGAGTCCTTTTGGTAACTCATGCTGAC  529

seq1  ATAGAGACACTTCATGACATTATTGTCTCTTGCAGTGGGTGGGTGGCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACACTTCATGACATTATTGTCTCTTGCAGTGGGTGGGTGGCTAT  579

seq1  AAGATTTAGTAACAAAATAAACTCTAAAGAAAGTATGTACACTGACAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAGTAACAAAATAAACTCTAAAGAAAGTATGTACACTGACAGTT  629

seq1  AATTCCGAGAGAGTTTGAAATACTGCCAGCTGTCTTTGACAGTGATCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGAGAGAGTTTGAAATACTGCCAGCTGTCTTTGACAGTGATCAGA  679

seq1  TTAGAAGCCCTTGATAGTGATCCTTGATAATGTCTTCTTTCTATTGTTTC  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCCCTTGATAGTGATCCTTGATAATGTCTTCTTTCTATTGTTTC  729

seq1  GCAGAGCTCATAAGAATGTGCTGAATACACATTGGCCCAGATATTCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTCATAAGAATGTGCTGAATACACATTGGCCCAGATATTCAAAT  779

seq1  GATACTAATAGCAGATCAAAACACCTTCAGTTGGATAATTCCAAATGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAATAGCAGATCAAAACACCTTCAGTTGGATAATTCCAAATGGAA  829

seq1  TTAACAACTCTTTTATAGATAGGAAGATTAAAAAGTAAAACATACCAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAACTCTTTTATAGATAGGAAGATTAAAAAGTAAAACATACCAAGT  879

seq1  TGAAGACCATAGGCTTGAAAATATAACTATAGGAAAACTTGGATCTCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCATAGGCTTGAAAATATAACTATAGGAAAACTTGGATCTCTGT  929

seq1  GATTTGAATTTCTGGTTTCTCTGATTAAAAGAAACAGGTAAGAAAGCACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATTTCTGGTTTCTCTGATTAAAAGAAACAGGTAAGAAAGCACC  979

seq1  ACTAGTGTAGGGAAGGTCTGCTGTGAAACAAGTCAGGAATTTCAGTGGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTAGGGAAGGTCTGCTGTGAAACAAGTCAGGAATTTCAGTGGCA  1029

seq1  CACAAAGTCAGTGATGGGCCATCAGATGCTCAAAGAAATGTAGACTCTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTCAGTGATGGGCCATCAGATGCTCAAAGAAATGTAGACTCTAA  1079

seq1  GGAATTC  1106
      |||||||
seq2  GGAATTC  1086


| Home | SequenceCutter | Blast | Download |