BAC Information

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BAC

Clone NameB6Ng01-342I04
Chromosome12 (Build37)
Map Location 40,080,122 - 40,179,789
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342I04.bB6Ng01-342I04.g
ACCGA125572GA125573
length1,202532
definitionB6Ng01-342I04.b B6Ng01-342I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,080,122 - 40,081,341)(40,179,269 - 40,179,789)
sequence
gaattcactaggggttttagtcactatacttattcatgtttttgtggctt
gatgtattttttatttttatttatgtgtgtgtttgtgtatttttatatat
ctcacaccagctttttttctttaggaaattctcaattatcaaaactatct
ttacatttggagtatctttagaagaaaactgactcattttattaaaccta
taatttaactctcaaagccttcatggagcacttgacccagaacattcagg
gtagaaagataaatgacaatttacttttgctttgaaagaatcagggtgat
ttctgtgaggatgggttaagttacttggagattgcaattagattcttttt
ataaaaactgataatagattctcctctcatgctacacatgatgaccacag
agccccaccccattccttccaaaattttccaccttccctctcccccagat
caactcctctttcctttcctcttcagaaaagagcaggtctcccagagaca
acagtcagctctgagggaaggaagccagtgaacatctccaatctagacac
tgtccacataatgtctggctatgggtctctgcacttgctcccacttctga
ctgccagaggaagtctcttcaataattcttaactgcatagaggaagaaat
gaaggcatttctcacttatcaaatgcattattcatgagaccagaatccag
aaagcattaaatagtttagttaaaatatattttctttttccaaaatgaac
aatgaaatcacaagagtttcttgtgattgtaaaatgtactgcaaatttat
ttttattcctcagtgaaactactaacatcgtattacttcaccgggattcc
aacctgtacagcctacttcatcctactccaataggtacaccatgctccag
gaactggctacgaacctccaaccaaagccagcttgcagctcccaggaatt
ttgctctaagaaacccagcttgatacttactactgcaaatgtgactctca
tttagggcctggtaatactctataggatatacagctggccagggttctac
tctgtgggtttcttctcacgtgactgacagttcagaagatgttttagttt
attatggtcaacttgtcagtcttgatcttctaactaagtaatggagacag
ttggaagtccttccaatgctaaccttgtagattaaccatgttttttatgg
ag

gaattctctcttgaaaaaaataaaccagtgtcaatgatggaaacatgcta
ttggcactgatggacaaattttgatgtaaactttcagacttcttaatttt
atctttctatacaaattaattcgatttgatggatttataagtacttatag
aattaattagtaaatactgtctactaagaaagtttgattacttttgagga
agtttccaaattattcaatgacaaaaagacaagaagctttagagatggat
aggaataattagaacattaatcattcacatttactcattcaatgaaacct
catatacataccaacttttgtagtaggggtgtgcaaaaatttttatttgt
ctcaaagttcttgagtacagtacttacacttacagtttagttgaaatact
gattattttcatactctctgaaagcaaagagttttatgagttcagttttt
aatttttaaattttttattatatatatatatatatatatatatatatata
tatatatatatggtgtggtggatatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40080122_40081341
seq2: B6Ng01-342I04.b_48_1249

seq1  GAATTCACTAGGGGTTTTAGTCACTATACTTATTCATGTTTTTGTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGGGTTTTAGTCACTATACTTATTCATGTTTTTGTGGCTT  50

seq1  GATGTATTTTTTATTTTTATTTATGTGTGTGTTTGTGTATTTTTATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTTTTTATTTTTATTTATGTGTGTGTTTGTGTATTTTTATATAT  100

seq1  CTCACACCAGCTTTTTTTCTTTAGGAAATTCTCAATTATCAAAACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCAGCTTTTTTTCTTTAGGAAATTCTCAATTATCAAAACTATCT  150

seq1  TTACATTTGGAGTATCTTTAGAAGAAAACTGACTCATTTTATTAAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGGAGTATCTTTAGAAGAAAACTGACTCATTTTATTAAACCTA  200

seq1  TAATTTAACTCTCAAAGCCTTCATGGAGCACTTGACCCAGAACATTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAACTCTCAAAGCCTTCATGGAGCACTTGACCCAGAACATTCAGG  250

seq1  GTAGAAAGATAAATGACAATTTACTTTTGCTTTGAAAGAATCAGGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGATAAATGACAATTTACTTTTGCTTTGAAAGAATCAGGGTGAT  300

seq1  TTCTGTGAGGATGGGTTAAGTTACTTGGAGATTGCAATTAGATTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGGATGGGTTAAGTTACTTGGAGATTGCAATTAGATTCTTTTT  350

seq1  ATAAAAACTGATAATAGATTCTCCTCTCATGCTACACATGATGACCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTGATAATAGATTCTCCTCTCATGCTACACATGATGACCACAG  400

seq1  AGCCCCACCCCATTCCTTCCAAAATTTTCCACCTTCCCTCTCCCCCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCCCATTCCTTCCAAAATTTTCCACCTTCCCTCTCCCCCAGAT  450

seq1  CAACTCCTCTTTCCTTTCCTCTTCAGAAAAGAGCAGGTCTCCCAGAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTCTTTCCTTTCCTCTTCAGAAAAGAGCAGGTCTCCCAGAGACA  500

seq1  ACAGTCAGCTCTGAGGGAAGGAAGCCAGTGAACATCTCCAATCTAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCTCTGAGGGAAGGAAGCCAGTGAACATCTCCAATCTAGACAC  550

seq1  TGTCCACATAATGTCTGGCTATGGGTCTCTGCACTTGCTCCCACTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACATAATGTCTGGCTATGGGTCTCTGCACTTGCTCCCACTTCTGA  600

seq1  CTGCCAGAGGAAGTCTCTTCAATAATTCTTAACTGCATAGAGGAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGGAAGTCTCTTCAATAATTCTTAACTGCATAGAGGAAGAAAT  650

seq1  GAAGGCATTTCTCACTTATCAAATGCATTATTCATGAGACCAGAATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATTTCTCACTTATCAAATGCATTATTCATGAGACCAGAATCCAG  700

seq1  AAAGCATTAAATAGTTTAGTTAAAATATATTTTCTTTTTCCAAAATGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTAAATAGTTTAGTTAAAATATATTTTCTTTTTCCAAAATGAAC  750

seq1  AATGAAATCACAAGAGTTTCTTGTGATTGTAAAATGTACTGCAAATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATCACAAGAGTTTCTTGTGATTGTAAAATGTACTGCAAATTTAT  800

seq1  TTTTATTCCTCAGTGAAACTACTAACATCGTATTACTTCACCGGGATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCCTCAGTGAAACTACTAACATCGTATTACTTCACCGGGATTCC  850

seq1  AACCTGTACAGCCTACTTCATCCTACTCCAATAGGTACACCATGCTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTACAGCCTACTTCATCCTACTCCAATAGGTACACCATGCTCCAG  900

seq1  GAACTGGCTACGAACCTCCAACCAAAGCCAGCTTGCAGCTCCCAGGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTACGAACCTCCAACCAAAGCCAGCTTGCAGCTCCCAGGAATT  950

seq1  TTGCTCTAAGAAACCCAGCTTGAATACTTACTACTGCAAATGTGAACTCT  1000
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  TTGCTCTAAGAAACCCAGCTTG-ATACTTACTACTGCAAATGTG-ACTCT  998

seq1  CATTTTAGGGCCTGGTAATACTCTATAGGATATACAGCTGGCCAGGGTTT  1050
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CA-TTTAGGGCCTGGTAATACTCTATAGGATATACAGCTGGCCAGGG-TT  1046

seq1  CTACTCTGTGGGTTTCTTCTTCACGTGACTGACAGTTCAGAAGATGTTTT  1100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTACTCTGTGGGTTTCTTC-TCACGTGACTGACAGTTCAGAAGATGTTTT  1095

seq1  AGTTTTATTATGTTCCACTTGTCAGTTCTTGGTCTTCATAACTAGGTAAA  1150
      || ||||||||| || ||||||||| ||||| ||||| |||||| || ||
seq2  AG-TTTATTATGGTCAACTTGTCAG-TCTTGATCTTC-TAACTAAGT-AA  1141

seq1  TGGAGACCTGTTTGAAAGTCCTTTTCTATGCCTTTATCTTGTAGGGTATT  1200
      |||||||    ||| |||||| || | ||||  | | |||||||   |||
seq2  TGGAGAC--AGTTGGAAGTCC-TTCCAATGC--TAACCTTGTAG---ATT  1183

seq1  AACTATGTTTTTTTATGGAG  1220
      ||| ||| ||||||||||||
seq2  AACCATG-TTTTTTATGGAG  1202


seq1: chr12_40179269_40179789
seq2: B6Ng01-342I04.g_65_585 (reverse)

seq1  CCACCACACCATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATAATAAAAAATTTAAAAATTAAAAACTGAACTCATAAAACTCTTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAAATTTAAAAATTAAAAACTGAACTCATAAAACTCTTTGCTT  100

seq1  TCAGAGAGTATGAAAATAATCAGTATTTCAACTAAACTGTAAGTGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGTATGAAAATAATCAGTATTTCAACTAAACTGTAAGTGTAAGT  150

seq1  ACTGTACTCAAGAACTTTGAGACAAATAAAAATTTTTGCACACCCCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACTCAAGAACTTTGAGACAAATAAAAATTTTTGCACACCCCTACT  200

seq1  ACAAAAGTTGGTATGTATATGAGGTTTCATTGAATGAGTAAATGTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTTGGTATGTATATGAGGTTTCATTGAATGAGTAAATGTGAATG  250

seq1  ATTAATGTTCTAATTATTCCTATCCATCTCTAAAGCTTCTTGTCTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTCTAATTATTCCTATCCATCTCTAAAGCTTCTTGTCTTTTTG  300

seq1  TCATTGAATAATTTGGAAACTTCCTCAAAAGTAATCAAACTTTCTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAATAATTTGGAAACTTCCTCAAAAGTAATCAAACTTTCTTAGTA  350

seq1  GACAGTATTTACTAATTAATTCTATAAGTACTTATAAATCCATCAAATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATTTACTAATTAATTCTATAAGTACTTATAAATCCATCAAATCG  400

seq1  AATTAATTTGTATAGAAAGATAAAATTAAGAAGTCTGAAAGTTTACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTGTATAGAAAGATAAAATTAAGAAGTCTGAAAGTTTACATCA  450

seq1  AAATTTGTCCATCAGTGCCAATAGCATGTTTCCATCATTGACACTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTCCATCAGTGCCAATAGCATGTTTCCATCATTGACACTGGTTT  500

seq1  ATTTTTTTCAAGAGAGAATTC  521
      |||||||||||||||||||||
seq2  ATTTTTTTCAAGAGAGAATTC  521


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