BAC Information

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BAC

Clone NameB6Ng01-343F22
Chromosome12 (Build37)
Map Location 52,449,002 - 52,449,802
singlet/doubletsinglet
Overlap gene6030408C04Rik
Upstream genePrkcm, LOC100039517, LOC636070, LOC100039525
Downstream geneScfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343F22.bB6Ng01-343F22.g
ACCGA126165GA126166
length1,079810
definitionB6Ng01-343F22.b B6Ng01-343F22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcattggatttagctatttctgagtttttccttgtggtagaaa
aggtgatgttttatgtgatttctgtggagctagtcttttgtacatttatt
tattcaatgtgtgtgtgtgtgcgtgtgtgccacagtgtgcattcagatca
aaggacaccttcaggtgtcagttttctctttctaccatcagagtgtcagg
gattgaactctcggtttggtaggtagcaagggcccttatctgcagagcca
ttgcaccagccctgaattttcttaatgaattgttattgggtccaaatacc
cattctaagtgtgtttgataagcatatgcattgggcatatgcatttaaaa
attaaaagtttaatgtaaataattttttcatacaagtatgtattttatgt
tgggtgtagtctcctgcctaacccacctttctcatccccctctcagttgt
gtcctcactaggcagtttcacttccactctatgtatgcatacatggaatt
gtggaacattacagaacctataaaccatgaacgagagaaacacacagtat
tttctgagactggcttaactcactaaatatgattatttccatttgcatcc
atctttctgacataacttcattctttttattacatttattaatcgattgg
ttgtgtgtatatgtaaacccaagaattaagtgcaagtgtgtaggacacag
aataacttacagaagtcagtttttttcctgtggacctggggatcgaacac
aggtcataaagcttggtaacaaatgttttagttgctgagatatcttgtca
gctccagatttattcttctttacgcatgaaaaaaaattcatttgtatata
tacttgtgtattttctttacccattcctttatttttggacacagagatag
tttcaataacttagaaattgtggatagtgctaccataaacactgatgact
aagtattctcactgaggtgctgatgtggagtccttttgtgcagactaccc
aggagtggggccaagctagattcacatgggtagatctacttctgggcttt
taaattctcacatttgatttcccatagat
ccttcgcgcgccttctcattagcatgggcaagcctcctcccagcgtgtgg
cctgttggggggtgactggtgcgctccgcacgcctccgcggacgtgcagg
accgggagttgttttcctggccgggtccgcgcagccacccctgcgcgcac
gcccgaacttcattcccacccccaccccgaaagccaaggcgcagacgcag
cctccctgcgtccacttccccggggaggggccgagcagccgtgggttccg
ggtcgcaaacggaagtggacgacgaatttgaattgtgcgagccgttggat
ggggctgagcgggttgggcgtacggcagcgctgcggtcgacgtgagcggt
aacgcggcgagcctgggacttgtgccccgcgcctggtgaagacgtgcccg
gggacagacggaggtgtcacgggcggccgggtaggtgtgagcggtagggg
gcttctccacgcgctggacgtccgcgccctgccgctgtcgagccccgagc
tgctctttattaattaaagagggaaggggggagggcttcacggaggggtg
cccgttgtggctcccagtttgctcttgagaccggtccctcaccgcagaga
aatgacagccttgaaatgcctcgaggggattttaagctgaaatccgagta
tcctttgtgttttaaaaccggggtattttttcttttcacaccttgacact
tcttgtgtaccgcaaaaaatccgagctcctattgctcatttaaactggcc
tacagtagcagcggtggctcacagatgtttaagtttgctaacaatgggga
tagggtctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52449002_52449802
seq2: B6Ng01-343F22.g_73_882

seq1  CCTTCGCGCGCCTTCTCATTAGCATGGGCAAGCCTCCTCCCAGCGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGCGCGCCTTCTCATTAGCATGGGCAAGCCTCCTCCCAGCGTGTGG  50

seq1  CCTGTTGGGGGGTGACTGGTGCGCTCCGCACGCCTCCGCGGACGTGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGGGGGTGACTGGTGCGCTCCGCACGCCTCCGCGGACGTGCAGG  100

seq1  ACCGGGAGTTGTTTTCCTGGCCGGGTCCGCGCAGCCACCCCTGCGCGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGAGTTGTTTTCCTGGCCGGGTCCGCGCAGCCACCCCTGCGCGCAC  150

seq1  GCCCGAACTTCATTCCCACCCCCACCCCGAAAGCCAAGGCGCAGACGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGAACTTCATTCCCACCCCCACCCCGAAAGCCAAGGCGCAGACGCAG  200

seq1  CCTCCCTGCGTCCACTTCCCCGGGGAGGGGCCGAGCAGCCGTGGGTTCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCGTCCACTTCCCCGGGGAGGGGCCGAGCAGCCGTGGGTTCCG  250

seq1  GGTCGCAAACGGAAGTGGACGACGAATTTGAATTGTGCGAGCCGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCAAACGGAAGTGGACGACGAATTTGAATTGTGCGAGCCGTTGGAT  300

seq1  GGGGCTGAGCGGGTTGGGCGTACGGCAGCGCTGCGGTCGACGTGAGCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGCGGGTTGGGCGTACGGCAGCGCTGCGGTCGACGTGAGCGGT  350

seq1  AACGCGGCGAGCCTGGGACTTGTGCCCCGCGCCTGGTGAAGACGTGCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGGCGAGCCTGGGACTTGTGCCCCGCGCCTGGTGAAGACGTGCCCG  400

seq1  GGGACAGACGGAGGTGTCACGGGCGGCCGGGTAGGTGTGAGCGGTAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGACGGAGGTGTCACGGGCGGCCGGGTAGGTGTGAGCGGTAGGGG  450

seq1  GCTTCTCCACGCGCTGGACGTCCGCGCCCTGCCGCTGTCGAGCCCCGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCACGCGCTGGACGTCCGCGCCCTGCCGCTGTCGAGCCCCGAGC  500

seq1  TGCTCTTTATTAATTAAAGAGGGAAGGGGGGAGGGCTTCACGGAGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTATTAATTAAAGAGGGAAGGGGGGAGGGCTTCACGGAGGGGTG  550

seq1  CCCGTTGTGGCTCCCAG-TTGCTCTTGAGACCGGTCCCTCACCGCAGAGA  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCGTTGTGGCTCCCAGTTTGCTCTTGAGACCGGTCCCTCACCGCAGAGA  600

seq1  AATGACAGCCTTGAAATGCCTCGAGGGGA-TTTAAGCTGAAATCCGAGTA  648
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGACAGCCTTGAAATGCCTCGAGGGGATTTTAAGCTGAAATCCGAGTA  650

seq1  TCCTTTGTG-TTTAAAACCGGGGTATTTTT--CTTTCACACCTTGACACT  695
      ||||||||| ||||||||||||||||||||   |||||||||||||||||
seq2  TCCTTTGTGTTTTAAAACCGGGGTATTTTTTCTTTTCACACCTTGACACT  700

seq1  TCTTGTGTACCGC-AAAAATCCGAGC-CCTATTGCTCATTTAAACTGG-C  742
      ||||||||||||| |||||||||||| ||||||||||||||||||||| |
seq2  TCTTGTGTACCGCAAAAAATCCGAGCTCCTATTGCTCATTTAAACTGGCC  750

seq1  TACAGTAGCAGCGGTGGCTCACAGATG-TTAAGTTTGCTAACAATGGGGA  791
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACAGTAGCAGCGGTGGCTCACAGATGTTTAAGTTTGCTAACAATGGGGA  800

seq1  TAGGGTCTAG  801
      ||||||||||
seq2  TAGGGTCTAG  810