BAC Information

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BAC

Clone NameB6Ng01-343K05
Chromosome12 (Build37)
Map Location 47,533,765 - 47,671,435
singlet/doubletdoublet
Overlap geneLOC664952
Upstream genenone
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K05.bB6Ng01-343K05.g
ACCGA126365GA126366
length1,2051,142
definitionB6Ng01-343K05.b B6Ng01-343K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,533,765 - 47,534,991)(47,670,251 - 47,671,435)
sequence
gaattctcagagattaagtgcatgaggaaacaataggagctttgaaaagc
catcctagttgttgggtggaacagcagttcatccaacacaaagtcagaaa
aacacaaagaaatgcccagttaattagaatcatggatgagtatctccaag
tgttgaggaaaaatgactactatgcagcatccattgtgtgtaaacctgct
taagataacagaatcacaaaattatctctactcaaataaagtatgaaaaa
ctactacctacaaccctccagaagccatcaagttaggaagaaaagagcca
agaagaatgtgtggatacagggcacggacaagcatggtacagaagggtca
ccccagatcaggacaaaggtaaagtattaccagttgtgaagaggagatct
agaagaaagaatttggaaactttaatagaggaattacttgtatatttaag
gatgccctcaagaaatacatacatatacattgtgaaatggttaaactggc
tattaagcaacattccaagactattccaagaataatacctaccttgctat
tatctgtagacaatgcaactttatcagtgccacttgaaatttattcctgc
tctcaactgtgactttatatctttgtctaagttcccattactcactattt
atgaaataaaattgttttatatattttgaagcatattataaaatatttat
aagataaaacatgatatttttgtcaacttaaaacataagtaattttagag
tccaaaaatatagaggtgtaatgcctaatttatgagaaaggaactatagg
atataaatatgacataatgaagacaaaagaaatgagtaaaaactcaaagt
aaatatacaagtaagaggttgtaaaaattataaaagaggatgtaatggta
gaaatatttcaactatgtcagtaaacataataacatatgatgcttaccaa
cgttctcagttgaatgaaaatataataataataataataataataatata
tcaaagcttagggatttagctcagtttagaacactgcttgtagcccagtc
ctgggttggccttaacactcagaaaaagaaaaatattaagttcttgagct
ggatagatgctcagttgtcaagagacattactacatcaagtccaagtcat
tccattgcaagttcgacaatacgaactactgtactccgcctggcctctga
atgta

gaattccctacccatttaaccctatctgcaaagatcccttgtcttgaaat
ataacttattttcaaattctgaagactaagccatagctttctgtgtttgt
ggggagaggactatgcttggtaccattagaaaaacaatatgaaagagaaa
aattacagatgtagaaaataaattataaagttcacccctgtgcaattaga
tgtgaaagtctactggaatggatgattccctaagaaaacacaaagtatta
atatctcagatcaggaagggcagaagaaaatgttctttgcccatacaaag
gagttaagaagtctcccaacaggtgcccatatccaagtgtcttcacaggt
ttccctcgctaaatatttaagaaataaggaatttcaatgtcaagtatatg
atccaataaaattaagaaacagttacactagctgcaacaaatgataacga
gcctgattctctacatccgtgttctcagtattttaaggaattggaggcag
gcttttgttagcatggacctaacttgttgagctagttgaaggcagttctc
tacacggcaacaatatcatgtccagggcaggcatgagagggctcatgaat
agattagcatggacatcagacatgtggatggccactgcagttgctgtcct
tctggggctgtggatatttcttgcccacctgactttaccacattaactgc
ttgcttcttgtgatctttccaaaggatttgaaatccagtttcctgtttcc
gatttcaatctacttgaaatacgtggaatagtttatattctttttattga
agtatgacagactgagttacttttgtgagccaactcaaattgatgacata
ctctgacaaaggaagcatgtgaaaaacaaaactaaagtaagaactagttt
tcatcaataattttaatgctaaattttaggaaaatattaacaaatacaca
aacaaaataagtgactaaattttaaaggataatcctgtgcactaagtatt
aaaagtcattattattttatattttagagaacaggaagaaacagaatgac
cttttaagagagtgaatatctcatacatgcaccagacagtgagcatagaa
catggatgcttatagatgactgatacaaaatacaggtgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47533765_47534991
seq2: B6Ng01-343K05.b_49_1253

seq1  GAATTCTCAGAGATTAAGTGCATGAGGAAACAATAGGAGCTTTGAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGATTAAGTGCATGAGGAAACAATAGGAGCTTTGAAAAGC  50

seq1  CATCCTAGTTGTTGGGTGGAACAGCAGTTCATCCAACACAAAGTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGTTGTTGGGTGGAACAGCAGTTCATCCAACACAAAGTCAGAAA  100

seq1  AACACAAAGAAATGCCCAGTTAATTAGAATCATGGATGAGTATCTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGAAATGCCCAGTTAATTAGAATCATGGATGAGTATCTCCAAG  150

seq1  TGTTGAGGAAAAATGACTACTATGCAGCATCCATTGTGTGTAAACCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGAAAAATGACTACTATGCAGCATCCATTGTGTGTAAACCTGCT  200

seq1  TAAGATAACAGAATCACAAAATTATCTCTACTCAAATAAAGTATGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAACAGAATCACAAAATTATCTCTACTCAAATAAAGTATGAAAAA  250

seq1  CTACTACCTACAACCCTCCAGAAGCCATCAAGTTAGGAAGAAAAGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCTACAACCCTCCAGAAGCCATCAAGTTAGGAAGAAAAGAGCCA  300

seq1  AGAAGAATGTGTGGATACAGGGCACGGACAAGCATGGTACAGAAGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGTGTGGATACAGGGCACGGACAAGCATGGTACAGAAGGGTCA  350

seq1  CCCCAGATCAGGACAAAGGTAAAGTATTACCAGTTGTGAAGAGGAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATCAGGACAAAGGTAAAGTATTACCAGTTGTGAAGAGGAGATCT  400

seq1  AGAAGAAAGAATTTGGAAACTTTAATAGAGGAATTACTTGTATATTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGAATTTGGAAACTTTAATAGAGGAATTACTTGTATATTTAAG  450

seq1  GATGCCCTCAAGAAATACATACATATACATTGTGAAATGGTTAAACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCAAGAAATACATACATATACATTGTGAAATGGTTAAACTGGC  500

seq1  TATTAAGCAACATTCCAAGACTATTCCAAGAATAATACCTACCTTGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCAACATTCCAAGACTATTCCAAGAATAATACCTACCTTGCTAT  550

seq1  TATCTGTAGACAATGCAACTTTATCAGTGCCACTTGAAATTTATTCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTAGACAATGCAACTTTATCAGTGCCACTTGAAATTTATTCCTGC  600

seq1  TCTCAACTGTGACTTTATATCTTTGTCTAAGTTCCCATTACTCACTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTGTGACTTTATATCTTTGTCTAAGTTCCCATTACTCACTATTT  650

seq1  ATGAAATAAAATTGTTTTATATATTTTGAAGCATATTATAAAATATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAAATTGTTTTATATATTTTGAAGCATATTATAAAATATTTAT  700

seq1  AAGATAAAACATGATATTTTTGTCAACTTAAAACATAAGTAATTTTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAACATGATATTTTTGTCAACTTAAAACATAAGTAATTTTAGAG  750

seq1  TCCAAAAATATAGAGGTGTAATGCCTAATTTATGAGAAAGGAACTATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATATAGAGGTGTAATGCCTAATTTATGAGAAAGGAACTATAGG  800

seq1  ATATAAATATGACATAATGAAGACAAAAGAAATGAGTAAAAACTCAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATGACATAATGAAGACAAAAGAAATGAGTAAAAACTCAAAGT  850

seq1  AAATATACAAGTAAGAGGTTGTAAAAATTATAAAAGAGGATGTAATGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAAGTAAGAGGTTGTAAAAATTATAAAAGAGGATGTAATGGTA  900

seq1  GAAATATTTCAACTATGTCAGTAAACATAATAACATATGATGCTTACCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTCAACTATGTCAGTAAACATAATAACATATGATGCTTACCAA  950

seq1  CGTTCTCAGGTTGAATGAAAATAATAATAATAATAATAATAATAATAATA  1000
      |||||||| ||||||||||||| |||||||||||||||||||||||||| 
seq2  CGTTCTCA-GTTGAATGAAAAT-ATAATAATAATAATAATAATAATAAT-  997

seq1  ATATCAAAGGCTTAGGGATTTAGCTCAGTTTTAGAACACTTGCTTGGTAA  1050
      |||||||| ||||||||||||||||||| |||||||||| ||||||   |
seq2  ATATCAAA-GCTTAGGGATTTAGCTCAG-TTTAGAACAC-TGCTTG--TA  1042

seq1  GCCCAAGGTCCTGGGTTGGCCTTACACCTCAGAAAA--GAAAATATTAAG  1098
      |||||  |||||||||||||||||   |||||||||   |||||||||| 
seq2  GCCCA--GTCCTGGGTTGGCCTTAACACTCAGAAAAAGAAAAATATTAA-  1089

seq1  GTTCTGGAGCTGGATAGATGGCTCAGTGGTTCAGAGCATTTACTACTTCC  1148
      ||||| ||||||||||||| ||||||| ||  ||||   ||||||| |  
seq2  GTTCTTGAGCTGGATAGAT-GCTCAGTTGTCAAGAGACATTACTACAT--  1136

seq1  CAAGTTCCCCAGTTCCATTCCCACTGTGCATGTCAGACAATTCCCAACTA  1198
      |||||  || |||  |||||   |  |||| ||  ||||| | | |||||
seq2  CAAGT--CCAAGT--CATTC---CATTGCAAGTTCGACAA-TACGAACTA  1178

seq1  CCTGTAACTCCAGCTGGCCTCTGAATGTA  1227
       |||| |||||  ||||||||||||||||
seq2  -CTGT-ACTCCGCCTGGCCTCTGAATGTA  1205


seq1: chr12_47670251_47671435
seq2: B6Ng01-343K05.g_63_1204 (reverse)

seq1  CTAGCAACTGTTAATTTTGTAACCAGTCATCTTATTAAGCATTCCCATTG  50
      |||||| ||||  ||||||| | |||||||||   |||||||  ||||  
seq2  CTAGCACCTGT--ATTTTGT-ATCAGTCATCT--ATAAGCAT--CCAT--  41

seq1  TTTCTAATTGCTTTCAACTGGTTCTTGGTGCAATGTATGAAGATATGTCA  100
       |||||  ||||    ||||  || |||||| ||||||| |||||| |||
seq2  GTTCTA--TGCT---CACTG--TC-TGGTGC-ATGTATG-AGATAT-TCA  80

seq1  CTCTCTTTAAAAGGTCCATTCCTGTTTCTTTCCCTGTTTCCTCTAAAATA  150
      ||||| ||||||||| |||| |||||||||  ||||||  ||||||||||
seq2  CTCTC-TTAAAAGGT-CATT-CTGTTTCTT--CCTGTT--CTCTAAAATA  123

seq1  TTAAAATAATAATTGACTTTTTAATTAACCTTAGTTGCACAGGATTTATT  200
       ||||||||||| |||| |||||||    ||||| |||||||||||   |
seq2  -TAAAATAATAA-TGAC-TTTTAAT---ACTTAG-TGCACAGGATT--AT  164

seq1  CCTTTAAAATTTAGTCACTTATTTTTGTTTTGTTGTATTTTGTTTAATAT  250
      ||||||||||||||||||||| ||||||||   |||||||   |||||| 
seq2  CCTTTAAAATTTAGTCACTTA-TTTTGTTT--GTGTATTT--GTTAATA-  208

seq1  TTTTCCTAAAATTTAGCATTAAAATTATTGATGAAAACTAGTTCTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAAAATTTAGCATTAAAATTATTGATGAAAACTAGTTCTTACTT  258

seq1  TAGTTTTGTTTTTTCACATGCTTCCTTTGTCAGAGTATGTCATCAATTTG  350
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTG-TTTTTCACATGCTTCCTTTGTCAGAGTATGTCATCAATTTG  307

seq1  AGTTGGCTCACAAAAGTAACTCAGTCTGTCATACTTCAATAAAAAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTCACAAAAGTAACTCAGTCTGTCATACTTCAATAAAAAGAATA  357

seq1  TAAACTATTCCACGTATTTCAAGTAGATTGAAATCGGAAACAGGAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTCCACGTATTTCAAGTAGATTGAAATCGGAAACAGGAAACTG  407

seq1  GATTTCAAATCCTTTGGAAAGATCACAAGAAGCAAGCAGTTAATGTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAATCCTTTGGAAAGATCACAAGAAGCAAGCAGTTAATGTGGTA  457

seq1  AAGTCAGGTGGGCAAGAAATATCCACAGCCCCAGAAGGACAGCAACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGTGGGCAAGAAATATCCACAGCCCCAGAAGGACAGCAACTGCA  507

seq1  GTGGCCATCCACATGTCTGATGTCCATGCTAATCTATTCATGAGCCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATCCACATGTCTGATGTCCATGCTAATCTATTCATGAGCCCTCT  557

seq1  CATGCCTGCCCTGGACATGATATTGTTGCCGTGTAGAGAACTGCCTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGCCCTGGACATGATATTGTTGCCGTGTAGAGAACTGCCTTCAA  607

seq1  CTAGCTCAACAAGTTAGGTCCATGCTAACAAAAGCCTGCCTCCAATTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCAACAAGTTAGGTCCATGCTAACAAAAGCCTGCCTCCAATTCCT  657

seq1  TAAAATACTGAGAACACGGATGTAGAGAATCAGGCTCGTTATCATTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACTGAGAACACGGATGTAGAGAATCAGGCTCGTTATCATTTGTT  707

seq1  GCAGCTAGTGTAACTGTTTCTTAATTTTATTGGATCATATACTTGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAGTGTAACTGTTTCTTAATTTTATTGGATCATATACTTGACATT  757

seq1  GAAATTCCTTATTTCTTAAATATTTAGCGAGGGAAACCTGTGAAGACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTTATTTCTTAAATATTTAGCGAGGGAAACCTGTGAAGACACT  807

seq1  TGGATATGGGCACCTGTTGGGAGACTTCTTAACTCCTTTGTATGGGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGGCACCTGTTGGGAGACTTCTTAACTCCTTTGTATGGGCAAA  857

seq1  GAACATTTTCTTCTGCCCTTCCTGATCTGAGATATTAATACTTTGTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTCTTCTGCCCTTCCTGATCTGAGATATTAATACTTTGTGTTT  907

seq1  TCTTAGGGAATCATCCATTCCAGTAGACTTTCACATCTAATTGCACAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGGAATCATCCATTCCAGTAGACTTTCACATCTAATTGCACAGGG  957

seq1  GTGAACTTTATAATTTATTTTCTACATCTGTAATTTTTCTCTTTCATATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTTATAATTTATTTTCTACATCTGTAATTTTTCTCTTTCATATT  1007

seq1  GTTTTTCTAATGGTACCAAGCATAGTCCTCTCCCCACAAACACAGAAAGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTAATGGTACCAAGCATAGTCCTCTCCCCACAAACACAGAAAGC  1057

seq1  TATGGCTTAGTCTTCAGAATTTGAAAATAAGTTATATTTCAAGACAAGGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTAGTCTTCAGAATTTGAAAATAAGTTATATTTCAAGACAAGGG  1107

seq1  ATCTTTGCAGATAGGGTTAAATGGGTAGGGAATTC  1185
      |||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCAGATAGGGTTAAATGGGTAGGGAATTC  1142


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