BAC Information

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BAC

Clone NameB6Ng01-344K18
Chromosome12 (Build37)
Map Location 63,245,334 - 63,245,941
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344K18.bB6Ng01-344K18.g
ACCGA127097GA127098
length9871,202
definitionB6Ng01-344K18.b B6Ng01-344K18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttacattgagtagatagacccagctatatgacttattatagtag
acaatcttcttactaagtaaaaattttaaaaacaaaaatgaagaaaaaga
aagaatgagaaacaatcctcaacaaatagaagaagatggaaataatccca
ttaattctattagatcaccccaaatttgaggctggccttcaataaaatag
aaaacaacagaaagcacacatactcatggaaactgaacaactataaactt
aatgataacttggtcagggaagaaataaagaatgaaatgatggactttct
agaattaaatgaaaatgaaagcactacatacccatatttacaggacacaa
tgaaagcagtgctaagaggaaaattcatagcactaagtgcctttttaaaa
aaattggaaatatctcatattagcaacttaacagcacacctgaaaactct
agaacaaaaagaagcaaacacacaagtagtaggtagcaggagatagccaa
actcagggctaaaatcaaccaaatagaaacaaaggtaactactcgagccc
cgggctaccttgccagcagagtcttgcccaacacccgcaagggcccacac
gggactccccacgggaccctaagacctctggtgagtggaacacagcgcct
gccccaatccaatctcgcggaacttgagactgtggtacatagggaagcag
gctacccgggcctgatctggggcacaagtcccttccgctcgactcgagac
tcgagccccgggctaccttgccagcagagtcttgcccaacacccgctagg
gcccacacgggactccccacgggaccctaagacctctggtgagtggaaca
cagcgcctgtcccaatccaatcgcggggaacttgagactgtggtacatag
ggaagcaggctacccgggcttgatctggggcacaaaccccttccgctcca
ctcgagccccgggctaccttgccagctgagtcgcctg

gaattcactttataaattatgtcactttaagagctcaacattgtgtaaaa
aaaatccctatttaatctccttttgtcatgaaatacatatgacaatcatg
tgccaattacagagatatttatttatttgtttatttatttatttatttat
ttaagagatctttaaaacttgatgggacagtcccattgtcagaaggaata
ccaagcaaatttgaagaaatggtgctgtaacaaaagaaaaaaatcctacc
cagaaaaataatccagaataagatagtgtgattaggcaactataggatga
gaagaatactaaaaactttgtatctgacaagacttaattatccagaattg
taccagaaactcataaaacgtagggacatagacttaaatagcagttaagt
gtagagtgaacctggacagacatttctctaaagaagagacacaaacaacc
agcagattaagttaacaatgtgcagcaccactaaccaccagggaaattca
aatcaaaccacagtgagagaagcattcatcaaaaacagtaaaaggagcca
atgttagtgtgtagtgaggcaaagaggctccctccaaactctggatgcga
atgcaattgagtgcaaacattatgaaaattaacaaaaatgcttttttaga
aaaaaaatacaactggcaaataataccttattgaaatatccattacccag
atacagaaatgacacatgtccattcttatttacagagcctaggtccaaac
tctcatatttaactggagtaaccacagaagccaagaaattagaaagggat
atgtaagagaacaatataaggaatttagagattgcaataggaggaaatgt
aaggaaaatatgaacagagggaggagatgaaatgtgttcaaaggcccaga
acatatgaagaaatcaagaaaaaaattcccctaacctaaagcaagagata
tcaattaaaggtaaaaggaaatatacagaacaaaaagatagtgtagaaca
gagaaaggaatcacccttagcacataaaaccaaaatactaaacataagac
aagaaagaatataaaatatgcatgacgaagagcaggcagtctaccaatct
ggattctcaatatgcttctaagaagcagaagtctgcacagaatttcagcg
accttaggacatacagatgcctagtttcgagaacatcatctcatcacagt
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63245334_63245941
seq2: B6Ng01-344K18.b_49_656

seq1  GAATTCTTACATTGAGTAGATAGACCCAGCTATATGACTTATTATAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATTGAGTAGATAGACCCAGCTATATGACTTATTATAGTAG  50

seq1  ACAATCTTCTTACTAAGTAAAAATTTTAAAAACAAAAATGAAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTCTTACTAAGTAAAAATTTTAAAAACAAAAATGAAGAAAAAGA  100

seq1  AAGAATGAGAAACAATCCTCAACAAATAGAAGAAGATGGAAATAATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGAAACAATCCTCAACAAATAGAAGAAGATGGAAATAATCCCA  150

seq1  TTAATTCTATTAGATCACCCCAAATTTGAGGCTGGCCTTCAATAAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTATTAGATCACCCCAAATTTGAGGCTGGCCTTCAATAAAATAG  200

seq1  AAAACAACAGAAAGCACACATACTCATGGAAACTGAACAACTATAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAGAAAGCACACATACTCATGGAAACTGAACAACTATAAACTT  250

seq1  AATGATAACTTGGTCAGGGAAGAAATAAAGAATGAAATGATGGACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACTTGGTCAGGGAAGAAATAAAGAATGAAATGATGGACTTTCT  300

seq1  AGAATTAAATGAAAATGAAAGCACTACATACCCATATTTACAGGACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAATGAAAATGAAAGCACTACATACCCATATTTACAGGACACAA  350

seq1  TGAAAGCAGTGCTAAGAGGAAAATTCATAGCACTAAGTGCCTTTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGTGCTAAGAGGAAAATTCATAGCACTAAGTGCCTTTTTAAAA  400

seq1  AAATTGGAAATATCTCATATTAGCAACTTAACAGCACACCTGAAAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAAATATCTCATATTAGCAACTTAACAGCACACCTGAAAACTCT  450

seq1  AGAACAAAAAGAAGCAAACACACAAGTAGTAGGTAGCAGGAGATAGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAAAGAAGCAAACACACAAGTAGTAGGTAGCAGGAGATAGCCAA  500

seq1  ACTCAGGGCTAAAATCAACCAAATAGAAACAAAGGTAACTACTCGAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGCTAAAATCAACCAAATAGAAACAAAGGTAACTACTCGAGCCC  550

seq1  CGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACAC  600

seq1  GGGACTCC  608
      ||||||||
seq2  GGGACTCC  608


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