BAC Information

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BAC

Clone NameB6Ng01-344O17
Chromosome12 (Build37)
Map Location 47,031,512 - 47,032,690
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O17.bB6Ng01-344O17.g
ACCGA127279GA127280
length1,1621,173
definitionB6Ng01-344O17.b B6Ng01-344O17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataagatatgaggaggtttcagtattgaaggagaaagtcatttc
tatctagataaatcatctggttgtgtctatatacatcacacatgaaatgc
tgtgatggtattttaagatccattttcagtgtctgtggcagagaaagaca
tagtcacaaacactttggtttcactatccaaggggagacaacgttgccta
ttcctttagatggagtgataccacccccaccttcaggaaactgatttaaa
atcaactaaagaaactgtgtctgatcatgtcaagtcatatgcaagctgaa
gcaaatgcctcttcattattgtcttggggacagcatagccatgcatacta
aatggagtctcaccacatagtcacaaggctctcttggcaataatgagtac
tacataggacagatgaatacctgcccccccccccaacaccatcagcaccc
tttatatccttcttctgtattctttctcctctctctgtctctggtctttg
gaataaaattaaacactcattcctttctgattccttcttaacattactcc
cattctgtggattcatgtaccagaagattcagttggacacagagaagctg
tttatcctagagaggctcatttggtgctcaaatgactacagcttctggga
cagagcaacaagattattagagggaaaaaattggtatttgtttctacatt
catttgtttttcaatatctcattaatacaatggtcttttcttccattcca
tggctgattagaaaaaggtgtttaataaacactacgttttgctttccctt
aaacggcaacttgaactgccatgatgggaacagcctcagtatctgcagaa
tgttattgaatatgcaagacatcatgtgctttcctcagtctgtggtgtga
ccaataaaactgcttttactcaattttctcttttcaattaggaaaaatcc
ttaaaatggccatgaattttgaactttatcatttcatcaccttagagtca
tctgcaaatctgtaagaagcaaagttcatgcaaaaatagagtacttctca
aactttatagaacgtatgaagagcctccattatacttagccattatacat
gcctttctctgggtggctaccttaatgagccaattaagaaggtatgcata
gttgcgaagtaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatattgtactaacggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atgggtggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggccctagcaaa
atatagaagtggatgctcacagtcggctattggatggatcacatgggccc
ccaatgaaggagcttgagaaagtaccaaagagctaaagggatctgcaacc
ctataaggtggacacattatgactatcaggtacctcggagctctgactct
agctgcattatgcatcaaaagatggctagttcgtcattcactggaagaat
ccatgaccgcaaactttttattgccagttaggacgtcaagccataaggga
agtgactggatatgcgcaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47031512_47032690
seq2: B6Ng01-344O17.b_50_1211

seq1  GAATTCATAAGATATGAGGAGGTTTCAGTATTGAAGGAGAAAGTCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGATATGAGGAGGTTTCAGTATTGAAGGAGAAAGTCATTTC  50

seq1  TATCTAGATAAATCATCTGGTTGTGTCTATATACATCACACATGAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGATAAATCATCTGGTTGTGTCTATATACATCACACATGAAATGC  100

seq1  TGTGATGGTATTTTAAGATCCATTTTCAGTGTCTGTGGCAGAGAAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGTATTTTAAGATCCATTTTCAGTGTCTGTGGCAGAGAAAGACA  150

seq1  TAGTCACAAACACTTTGGTTTCACTATCCAAGGGGAGACAACGTTGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAAACACTTTGGTTTCACTATCCAAGGGGAGACAACGTTGCCTA  200

seq1  TTCCTTTAGATGGAGTGATACCACCCCCACCTTCAGGAAACTGATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGATGGAGTGATACCACCCCCACCTTCAGGAAACTGATTTAAA  250

seq1  ATCAACTAAAGAAACTGTGTCTGATCATGTCAAGTCATATGCAAGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAAAGAAACTGTGTCTGATCATGTCAAGTCATATGCAAGCTGAA  300

seq1  GCAAATGCCTCTTCATTATTGTCTTGGGGACAGCATAGCCATGCATACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCCTCTTCATTATTGTCTTGGGGACAGCATAGCCATGCATACTA  350

seq1  AATGGAGTCTCACCACATAGTCACAAGGCTCTCTTGGCAATAATGAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTCTCACCACATAGTCACAAGGCTCTCTTGGCAATAATGAGTAC  400

seq1  TACATAGGACAGATGAATACCTGCCCCCCCCCCCAACACCATCAGCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGGACAGATGAATACCTGCCCCCCCCCCCAACACCATCAGCACCC  450

seq1  TTTATATCCTTCTTCTGTATTCTTTCTCCTCTCTCTGTCTCTGGTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCCTTCTTCTGTATTCTTTCTCCTCTCTCTGTCTCTGGTCTTTG  500

seq1  GAATAAAATTAAACACTCATTCCTTTCTGATTCCTTCTTAACATTACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATTAAACACTCATTCCTTTCTGATTCCTTCTTAACATTACTCC  550

seq1  CATTCTGTGGATTCATGTACCAGAAGATTCAGTTGGACACAGAGAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTGGATTCATGTACCAGAAGATTCAGTTGGACACAGAGAAGCTG  600

seq1  TTTATCCTAGAGAGGCTCATTTGGTGCTCAAATGACTACAGCTTCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTAGAGAGGCTCATTTGGTGCTCAAATGACTACAGCTTCTGGGA  650

seq1  CAGAGCAACAAGATTATTAGAGGGAAAAAATTGGTATTTGTTTCTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAACAAGATTATTAGAGGGAAAAAATTGGTATTTGTTTCTACATT  700

seq1  CATTTGTTTTTCAATATCTCATTAATACAATGGTCTTTTCTTCCATTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTTTCAATATCTCATTAATACAATGGTCTTTTCTTCCATTCCA  750

seq1  TGGCTGATTAGAAAAAGGTGTTTAATAAACACTACGTTTTGCTTTCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATTAGAAAAAGGTGTTTAATAAACACTACGTTTTGCTTTCCCTT  800

seq1  AAACGGCAACTTGAACTGCCATGATGGGAACAGCCTCAGTATCTGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGCAACTTGAACTGCCATGATGGGAACAGCCTCAGTATCTGCAGAA  850

seq1  TGTTATTGAATATGCAAGACATCATGTGCTTTCCTCAGTCTGTGGTGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAATATGCAAGACATCATGTGCTTTCCTCAGTCTGTGGTGTGA  900

seq1  CCAATAAAACTGCTTTTACTCAATTTTCTCTTTTCAATTA-GAAAAATCC  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAATAAAACTGCTTTTACTCAATTTTCTCTTTTCAATTAGGAAAAATCC  950

seq1  TTAAAATGGCCATGAA-TTTGAACTTTATCATTTCATCACCTTAGAGTCA  998
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAAATGGCCATGAATTTTGAACTTTATCATTTCATCACCTTAGAGTCA  1000

seq1  TCTGCCAAATCTGTAAGAAGCAAAGTTCATGCAAAAAATTAGAGTACCTT  1048
      |||| ||||||||||||||||||||||||||||||||  ||||||| |||
seq2  TCTG-CAAATCTGTAAGAAGCAAAGTTCATGCAAAAA--TAGAGTA-CTT  1046

seq1  CCTCCAAACTTTATAG-ACGTTAATGGAAGAG-CTCCATTTAATACTTAA  1096
      |   |||||||||||| ||||  || |||||| |||||||  ||||||| 
seq2  C--TCAAACTTTATAGAACGT--AT-GAAGAGCCTCCATT--ATACTTAG  1089

seq1  GCAAATTTATACAATTGCTTTCTCTGTGTGGCTACACTAATGAGCATATA  1146
       ||   |||||| ||  ||||||||| ||||||||  ||||||||  || 
seq2  CCA---TTATAC-ATGCCTTTCTCTGGGTGGCTACCTTAATGAGCCAATT  1135

seq1  AGAAAGTTAATTGCATAGATGTTGCAGAAGTAA  1179
      |  ||| ||  ||||||   ||||| |||||||
seq2  AAGAAGGTA--TGCATA---GTTGC-GAAGTAA  1162