BAC Information

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BAC

Clone NameB6Ng01-344O18
Chromosome12 (Build37)
Map Location 24,313,852 - 24,314,973
singlet/doubletsinglet
Overlap geneLOC100042923
Upstream geneEG668670, LOC668680, LOC100042895, LOC100043435, EG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697
Downstream geneLOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344O18.bB6Ng01-344O18.g
ACCGA127281GA127282
length1,1971,122
definitionB6Ng01-344O18.b B6Ng01-344O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgccctttatatccctcacagagcgacactggtcagctctatgataaccc
ttgccacacttagagcaaagagtgagagtccctccctgtttatctggagc
tctgcaatctttcttaaaatgcccaggctttccgcagttaaaacatgtcc
tctgattatttctgcccatggagcggttctgagattgaaggatggcagcc
gctaaacctgcattgctgagaggtcccccaagctctcgacagaccctgag
ccagtcttgtaagcctttgttctttcttggggctatggccgctcggcact
cctttgtggcttgctcataaattagctgttctatgagaggcgcagcttgc
tctgactctccaaaaatacgctctgctgcctctgtcattctggccacaaa
atctgagaaagattcctgaggtccctggattatctttgttaactgcccag
tggtttcacctgctcgagagagcgccttccaggccctaatagccgtggaa
gaaatctgggcataggctccccaatggtagtttgtctgatcagcagaata
agctccctgacccgttaacaagtcaaaagtccaatctctctgctctggag
tcaaagcagctgcgtttgctcgggcctgcgcttgggcagcttcgtgccaa
agcgctctccattccatatatttgcccatactagggagagcggcttttac
aaccgtctgccaatcagcaggagttagtgccataccagcgagcctgtcta
actgcaccaaggtaaaattagcattggttccgtatttacggaccgactcg
gcaatttctttaatttgtacatattctaccggagcgtggacacgcccacc
ctcggctccttcaaagaccggaaatgcctgttgtattttcttttgttcct
ctcggggaatgaatgagtctgcgcactgcctctctgcgtactgcctctct
gcgcatctccctgcgcactgcctctctgcgcatctccctgcgcactgcct
ctctgcgcatctctctgcgcattgctctctggcgcatgctgacgcactac
gcaggcggggacctccgcatagggcggacctgagcggactgcggaggtga
acaggtaccgctgcttcgccagccgctttagcctttctgaccagttactg
gcctggaaatgggctgcttcttcctccaggttcggttccctcccgag
gaattcaggagagcagaaccaggttcttccagtccacagacaccccctcc
ccagccaggcaactctgaacacagccaggactcagggcagcctacaacag
tactttcaaaccctggtgcacacactgctcctgagagtgctgttaaaatg
cacactctatttccacagctctgccatggaatctgaggctctgcaagttc
cacaccacactgactggtgctgtcaggtgaagcattttgcagttgcaagg
gcctaaaactgtgctcatcaacaagacttcctacaagtatggagaacaaa
gtcctgaatctacatcacacaacagagtggccaccaacccatgtggccac
caagtatctgagaccaagtaatgtaaacaaagagctgacttcattcttgg
tctaaaatgctgaccaaaagccagaagtgcagttccccaccatgaaagga
ctctgtaatttcttggcctaaggagccttctacagcctggatggatagga
aaattccaccaagggcctagttgatcatcaacccaagagtggataaatat
ttctctaaggtagggacacagatatggaagactggattaaaccaccttgg
agcctcttacaccaggcttccattcaaggccctttcatccacatcccgga
tcacatgtaagcagtccagtcttcctgttctctacatcatcaccacagat
gctctgatcacatgtaagtggtcccagtcttcctgttctctatatcatca
ccatagatgctctgatcacatgtaagcagtcccagtcttcctgttctcta
tatcatcaccatagatgctctgatcacatgtaagcagtcccagtcttcct
gttctctacatcatcaccatagatgctctgatcacatgtaagcagtccca
gtcttcctgttctctatatcatcacatagatgctctgatcacatgtaagt
ggtccagtcttcctgtctctacatcatcacatagatgctctcgcagacat
gacctcacatcactgatctgcctggagatcgttttcttccccacggaaac
acagattctttccaagaagagaagaatgtcctattcccgttcaactaaca
cacagcagcagttcctaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24313852_24314973
seq2: B6Ng01-344O18.g_68_1189

seq1  GAATTCAGGAGAGCAGAACCAGGTTCTTCCAGTCCACAGACACCCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGCAGAACCAGGTTCTTCCAGTCCACAGACACCCCCTCC  50

seq1  CCAGCCAGGCAACTCTGAACACAGCCAGGACTCAGGGCATCCTACAACAG  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGCCAGGCAACTCTGAACACAGCCAGGACTCAGGGCAGCCTACAACAG  100

seq1  TACTTTCAAACCCTGGTGCACACACTGCTCCTGAGAGTGCTGTTAAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCAAACCCTGGTGCACACACTGCTCCTGAGAGTGCTGTTAAAATG  150

seq1  CACACTCTATTTCCACAGCTCTGCCATGGAATCTGAGGCTCTGCAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTATTTCCACAGCTCTGCCATGGAATCTGAGGCTCTGCAAGTTC  200

seq1  CACACCACACTGACTGGTGCTGTCAGGTGAAGCATTTTGCAGTTGCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACACTGACTGGTGCTGTCAGGTGAAGCATTTTGCAGTTGCAAGG  250

seq1  GCCTAAAACTGTGCTCATCAACAAGACTTCCTACAAGTATGGAGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAACTGTGCTCATCAACAAGACTTCCTACAAGTATGGAGAACAAA  300

seq1  GTCCTGAATCTACATCACACAACAGAGTGGCCACCAACCCATGTGGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAATCTACATCACACAACAGAGTGGCCACCAACCCATGTGGCCAC  350

seq1  CAAGTATCTGAGACCAAGTAATGTAAACAAAGAGCTGACTTCATTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCTGAGACCAAGTAATGTAAACAAAGAGCTGACTTCATTCTTGG  400

seq1  TCTAAAATGCTGACCAAAAGCCAGAAGTGCAGTTCCCCACCATGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGCTGACCAAAAGCCAGAAGTGCAGTTCCCCACCATGAAAGGA  450

seq1  CTCTGTAATTTCTTGGCCTAAGGAGCCTTCTACAGCCTGGATGGATAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAATTTCTTGGCCTAAGGAGCCTTCTACAGCCTGGATGGATAGGA  500

seq1  AAATTCCACCAAGGGCCTAGTTGATCACCAACCCAAGAGTGGATAAATAT  550
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATTCCACCAAGGGCCTAGTTGATCATCAACCCAAGAGTGGATAAATAT  550

seq1  TTCTCTAAGGTAGGGACACAGATATGGAAGACTGGATTAAACCACCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAGGTAGGGACACAGATATGGAAGACTGGATTAAACCACCTTGG  600

seq1  AGCCTCTTACACCAGGCTTCCATTCAAGGCCCTTTCATCCACATCCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTACACCAGGCTTCCATTCAAGGCCCTTTCATCCACATCCCGGA  650

seq1  TCACATGTAAGCAGTCCAGTCTTCCTGTTCTCTACATCATCACCACAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTAAGCAGTCCAGTCTTCCTGTTCTCTACATCATCACCACAGAT  700

seq1  GCTCTGATCACATGTAAGTGGTCCCAGTCTTCCTGTTCTCTATATCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATCACATGTAAGTGGTCCCAGTCTTCCTGTTCTCTATATCATCA  750

seq1  CCATAGATGCTCTGATCACATGTAAGCAGTCCCAGTCTTCCTGTTCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGCTCTGATCACATGTAAGCAGTCCCAGTCTTCCTGTTCTCTA  800

seq1  TATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCCAGTCTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCCAGTCTTCCT  850

seq1  GTTCTCTACATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTACATCATCACCATAGATGCTCTGATCACATGTAAGCAGTCCCA  900

seq1  GTCTTCCTGTTCTCTATATCATCACCATAGATGCTCTGATCACATGTAAG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTTCCTGTTCTCTATATCATCA-CATAGATGCTCTGATCACATGTAAG  949

seq1  TGGTCCCAGTCTTCCTGTTCTCTACATCATCACCATAGATGCTCTCGCAG  1000
      |||| |||||||||||| |||||||||||||| |||||||||||||||||
seq2  TGGT-CCAGTCTTCCTG-TCTCTACATCATCA-CATAGATGCTCTCGCAG  996

seq1  ACATGACCTCACATCACTGATCTGCCTGGAGAATCGGTTTC-TCCCCACG  1049
      ||||||||||||||||||||||||||||||| |||| |||| ||||||||
seq2  ACATGACCTCACATCACTGATCTGCCTGGAG-ATCGTTTTCTTCCCCACG  1045

seq1  GAACCACAGATTCTTTC---AAAGAGAAGATATGT-CTAATCCC-TTCAC  1094
      ||| |||||||||||||    ||||||||| |||| ||| |||| |||| 
seq2  GAAACACAGATTCTTTCCAAGAAGAGAAGA-ATGTCCTATTCCCGTTCAA  1094

seq1  CTAACACACAGCAGCAGGTTCCAAATGA  1122
      ||||||||||||||||| | | ||||||
seq2  CTAACACACAGCAGCAGTTCCTAAATGA  1122