BAC Information

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BAC

Clone NameB6Ng01-345H03
Chromosome12 (Build37)
Map Location 66,147,366 - 66,262,896
singlet/doubletdoublet
Overlap genePrpf39, Fkbp3, Fancm, C79407
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik
Downstream geneWdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345H03.bB6Ng01-345H03.g
ACCGA127637GA127638
length1,1651,004
definitionB6Ng01-345H03.b B6Ng01-345H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,261,755 - 66,262,896)(66,147,366 - 66,148,371)
sequence
gaattcatttgtcttctggaacattgcaaagaagaaatatgcctctagat
gcagtctttattgacagcatcccttcaggcacactcactcctttgaaaga
tttggtaaaatatcagaagtcctctctaaaagttaatggtcataaaaaga
atcagttattagaaataagaacttctaacaataaagatctatttcaatcc
accatgttatcagaggctacccttccaaacagctctcttgatatcagtgt
tataaagcccagcatggatagattaagaaatgaaatgatttatgaatcac
caggtaaaatctttcaaagaatgaaagcaaaagtacagcgtgacaaacaa
gaacaactgacaaggagcagtagcatgttgggatcaccacagggtgaaca
caccaaagactttcctcctaacacggataagaaagctcagttgcaacaaa
cctatatctgtgaggaaaaacaaacgtcggtccaatccaatgacccttca
ttgggaggttagtttgattacataagggtttaaaatgtctttttaactgt
ttaatgtgtcagttttaagagcttagttaaaataatgaacagactaccaa
aatgtcttctcacattccagtgaaagtaatttttattgtgggaccgaaga
gagagaactgcagacatggtatcaaatcccagcactggggaatcatgtag
tctaggttggcctcaagtttgaaagtctcttgaatgctggaattacagga
atacatatcatattacattacttgatatgaatataagtacatgtatgtgt
atgagtgcaacacattacttgatatgtatacaagtatacactgtgtgtgt
atgggaatgtgggagtcagtaataggatttaagagcagataagttcctgt
ctttgagattctgatgactcttttgtctaatgtgcacacataaaaatgat
cctttttctttggcacaaatttttaagtgttctctttatatattcaaaaa
aaagcttactttctgttattttaaaattgcatttaaattattaaagactt
taaaacttataattcagagttaaattacaaaataggtactgcttagttct
ttaatttatctaggttgaaaaactttcacttttctcaaccaaccttttcc
tttctttgaggcctg

gaattccaggactacataatgagacctctctttaaatattaagtcattgg
atcctatgttttgtgtatctctcgccaagaatgtataaatactgtatttt
taattaaaaaaattatttaatggatgtgggtgtcttgcctgcatgtatgt
ctatgtaacatgtgagtgcctggtgtctgtgaaggccataaaacagtgtt
ggatcccagatccaactagagttagagatgactgggccaccttgtgggtg
ctgagtttctgggttctctagaagggcagtctgtgcacgttaatccttcc
tgtgttaaatagtttagtctttgtatgttgattgaaaatgtcctctttgt
gttcattaaattattacacctttttttcctgtttcctcttaggcactatt
tttttttttaagatttattattttactttgtgtgaatgaatgcttacctg
tgtatatgtacatgtgccgtatctctaccaggtacccaggaaactataat
gcctttcttatgatattttcaggaaaatgcttaactcattacccttttat
aaaaatacttatagtatttaatagtatataaaaatcaaatttgaattcct
gattttcctaaattagaacttttttgattatattaaaattgtaagataat
tttggaagtgtggtctgtttgggtaagagacccttgtttttttaggagga
ggttgtttgtttaactcaaatttttgtaacattttaaaatatatataggg
agaaacatatgctacagatcagtaaacttgtgactacaggtcagttctct
tctaccatgtgagtctgggggggatgaatttaggccctcaggctttctgg
cagtgatgtgacttgttgggctaatttgttgacctgtgattgatatttga
ggagcttgttttgaaactgtactagaaagatggatttttgtttgtttagt
atatgtagtgagtggagagttcacttgtgtggtgggtgtatgtgtgtgga
gtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66261755_66262896
seq2: B6Ng01-345H03.b_46_1210 (reverse)

seq1  CAGGCCTTTAAAGAAAGGAAA--GTTTGTTGAGAAA--TGAAAGTTTTTC  46
      |||||| | ||||||||||||  ||| |||||||||  ||||||||||||
seq2  CAGGCC-TCAAAGAAAGGAAAAGGTTGGTTGAGAAAAGTGAAAGTTTTTC  49

seq1  AA-CTAGATAAA-TAAAG-ACT-AGCAGTA-CTA-TTTGT-ATTTTACTC  89
      || ||||||||| ||||| ||| ||||||| ||| ||||| |||| ||||
seq2  AACCTAGATAAATTAAAGAACTAAGCAGTACCTATTTTGTAATTTAACTC  99

seq1  TGATTTAT-AGTTT--AAGTCTTTTATA--TTTAATGCATTTTTAAA--T  132
      ||| |||| |||||  |||||||| |||  || |||||| |||||||   
seq2  TGAATTATAAGTTTTAAAGTCTTTAATAATTTAAATGCAATTTTAAAATA  149

seq1  ACAG-AAGTAAGCTTTTTTT--GATATATAAAGAGAACACTT-AAAATTT  178
      |||| |||||||||||||||   ||||||||||||||||||| |||||||
seq2  ACAGAAAGTAAGCTTTTTTTTGAATATATAAAGAGAACACTTAAAAATTT  199

seq1  GTGCCAAAG-AAAAGGATCATTTTTATGTGTGCACATTAGAC-AAAGAGT  226
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GTGCCAAAGAAAAAGGATCATTTTTATGTGTGCACATTAGACAAAAGAGT  249

seq1  CATCAGAATCTCAAAGACAGGAACTTATCTGCTCTTAAATCCTATTACTG  276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAATCTCAAAGACAGGAACTTATCTGCTCTTAAATCCTATTACTG  299

seq1  ACTCCCACATTCCCATACACACACAGTGTATACTTGTATACATATCAAGT  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACATTCCCATACACACACAGTGTATACTTGTATACATATCAAGT  349

seq1  AATGTGTTGCACTCATACACATACATGTACTTATATTCATATCAAGTAAT  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGCACTCATACACATACATGTACTTATATTCATATCAAGTAAT  399

seq1  GTAATATGATATGTATTCCTGTAATTCCAGCATTCAAGAGACTTTCAAAC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGATATGTATTCCTGTAATTCCAGCATTCAAGAGACTTTCAAAC  449

seq1  TTGAGGCCAACCTAGACTACATGATTCCCCAGTGCTGGGATTTGATACCA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAACCTAGACTACATGATTCCCCAGTGCTGGGATTTGATACCA  499

seq1  TGTCTGCAGTTCTCTCTCTTCGGTCCCACAATAAAAATTACTTTCACTGG  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGTTCTCTCTCTTCGGTCCCACAATAAAAATTACTTTCACTGG  549

seq1  AATGTGAGAAGACATTTTGGTAGTCTGTTCATTATTTTAACTAAGCTCTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGAAGACATTTTGGTAGTCTGTTCATTATTTTAACTAAGCTCTT  599

seq1  AAAACTGACACATTAAACAGTTAAAAAGACATTTTAAACCCTTATGTAAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACACATTAAACAGTTAAAAAGACATTTTAAACCCTTATGTAAT  649

seq1  CAAACTAACCTCCCAATGAAGGGTCATTGGATTGGACCGACGTTTGTTTT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAACCTCCCAATGAAGGGTCATTGGATTGGACCGACGTTTGTTTT  699

seq1  TCCTCACAGATATAGGTTTGTTGCAACTGAGCTTTCTTATCCGTGTTAGG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGATATAGGTTTGTTGCAACTGAGCTTTCTTATCCGTGTTAGG  749

seq1  AGGAAAGTCTTTGGTGTGTTCACCCTGTGGTGATCCCAACATGCTACTGC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCTTTGGTGTGTTCACCCTGTGGTGATCCCAACATGCTACTGC  799

seq1  TCCTTGTCAGTTGTTCTTGTTTGTCACGCTGTACTTTTGCTTTCATTCTT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCAGTTGTTCTTGTTTGTCACGCTGTACTTTTGCTTTCATTCTT  849

seq1  TGAAAGATTTTACCTGGTGATTCATAAATCATTTCATTTCTTAATCTATC  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATTTTACCTGGTGATTCATAAATCATTTCATTTCTTAATCTATC  899

seq1  CATGCTGGGCTTTATAACACTGATATCAAGAGAGCTGTTTGGAAGGGTAG  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGCTTTATAACACTGATATCAAGAGAGCTGTTTGGAAGGGTAG  949

seq1  CCTCTGATAACATGGTGGATTGAAATAGATCTTTATTGTTAGAAGTTCTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATAACATGGTGGATTGAAATAGATCTTTATTGTTAGAAGTTCTT  999

seq1  ATTTCTAATAACTGATTCTTTTTATGACCATTAACTTTTAGAGAGGACTT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATAACTGATTCTTTTTATGACCATTAACTTTTAGAGAGGACTT  1049

seq1  CTGATATTTTACCAAATCTTTCAAAGGAGTGAGTGTGCCTGAAGGGATGC  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTTACCAAATCTTTCAAAGGAGTGAGTGTGCCTGAAGGGATGC  1099

seq1  TGTCAATAAAGACTGCATCTAGAGGCATATTTCTTCTTTGCAATGTTCCA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATAAAGACTGCATCTAGAGGCATATTTCTTCTTTGCAATGTTCCA  1149

seq1  GAAGACAAATGAATTC  1142
      ||||||||||||||||
seq2  GAAGACAAATGAATTC  1165


seq1: chr12_66147366_66148371
seq2: B6Ng01-345H03.g_64_1067

seq1  GAATTCCAGGACTACATAATGAGACCTCTCTTTAAATATTAAGTCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACTACATAATGAGACCTCTCTTTAAATATTAAGTCATTGG  50

seq1  ATCCTATGTTTTGTGTATCTCTCGCCAAGAATGTATAAATACTGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGTTTTGTGTATCTCTCGCCAAGAATGTATAAATACTGTATTTT  100

seq1  TAATTAAAAAAATTATTTAATGGATGTGGGTGTCTTGCCTGCATGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAAAATTATTTAATGGATGTGGGTGTCTTGCCTGCATGTATGT  150

seq1  CTATGTAACATGTGAGTGCCTGGTGTCTGTGAAGGCCATAAAACAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAACATGTGAGTGCCTGGTGTCTGTGAAGGCCATAAAACAGTGTT  200

seq1  GGATCCCAGATCCAACTAGAGTTAGAGATGACTGGGCCACCTTGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAGATCCAACTAGAGTTAGAGATGACTGGGCCACCTTGTGGGTG  250

seq1  CTGAGTTTCTGGGTTCTCTAGAAGGGCAGTCTGTGCACGTTAATCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCTGGGTTCTCTAGAAGGGCAGTCTGTGCACGTTAATCCTTCC  300

seq1  TGTGTTAAATAGTTTAGTCTTTGTATGTTGATTGAAAATGTCCTCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAATAGTTTAGTCTTTGTATGTTGATTGAAAATGTCCTCTTTGT  350

seq1  GTTCATTAAATTATTACACCTTTTTTTCCTGTTTCCTCTTAGGCACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAAATTATTACACCTTTTTTTCCTGTTTCCTCTTAGGCACTATT  400

seq1  TTTTTTTTTAAGATTTATTATTTTACTTTGTGTGAATGAATGCTTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAGATTTATTATTTTACTTTGTGTGAATGAATGCTTACCTG  450

seq1  TGTATATGTACATGTGCCGTATCTCTACCAGGTACCCAGGAAACTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTACATGTGCCGTATCTCTACCAGGTACCCAGGAAACTATAAT  500

seq1  GCCTTTCTTATGATATTTTCAGGAAAATGCTTAACTCATTACCCTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTATGATATTTTCAGGAAAATGCTTAACTCATTACCCTTTTAT  550

seq1  AAAAATACTTATAGTATTTAATAGTATATAAAAATCAAATTTGAATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTTATAGTATTTAATAGTATATAAAAATCAAATTTGAATTCCT  600

seq1  GATTTTCCTAAATTAGAACTTTTTTGATTATATTAAAATTGTAAGATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCTAAATTAGAACTTTTTTGATTATATTAAAATTGTAAGATAAT  650

seq1  TTTGGAAGTGTGGTCTGTTTGGGTAAGAGACCCTTGTTTTTTTAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTGTGGTCTGTTTGGGTAAGAGACCCTTGTTTTTTTAGGAGGA  700

seq1  GGTTGTTTGTTTAACTCAAATTTTTGTAACATTTTAAAATATATATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTGTTTAACTCAAATTTTTGTAACATTTTAAAATATATATAGGG  750

seq1  AGAAACATATGCTACAGATCAGTAAACTTGTGACTACAGGTCAGTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATATGCTACAGATCAGTAAACTTGTGACTACAGGTCAGTTCTCT  800

seq1  TCTACCATGTGAGTCT-GGGGGGATGAATTTAGGCCCTCAGGCTTTCTGG  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTACCATGTGAGTCTGGGGGGGATGAATTTAGGCCCTCAGGCTTTCTGG  850

seq1  CAAGTGATGTGACTTGTTGGGCTAATTTGTTGACCTGTGATTGATATTTG  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGTGATGTGACTTGTTGGGCTAATTTGTTGACCTGTGATTGATATTTG  899

seq1  AGGAGCTTGTTTTGAAACTGTACTAGAAAGATGGATTTTTGTTTTGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AGGAGCTTGTTTTGAAACTGTACTAGAAAGATGGATTTTTGTTT--GTTT  947

seq1  AGTTATTATGTAGTGAGT-GAGAGTTCACTTGTGT-GTGGGTGTATGTGT  997
      |||   |||||||||||| |||||||||||||||| ||||||||||||||
seq2  AGT--ATATGTAGTGAGTGGAGAGTTCACTTGTGTGGTGGGTGTATGTGT  995

seq1  GTGGAGTCC  1006
      |||||||||
seq2  GTGGAGTCC  1004


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