BAC Information

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BAC

Clone NameB6Ng01-345H12
Chromosome12 (Build37)12 (Build37)
Map Location 106,167,709 - 106,168,00096,271,449 - 96,272,530
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSerpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
Downstream gene4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345H12.bB6Ng01-345H12.g
ACCGA127653GA127654
length1761,072
definitionB6Ng01-345H12.b B6Ng01-345H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,167,709 - 106,168,000)(96,271,449 - 96,272,530)
sequence
gaattcactgcaggaagtccaggtaatacctcctatgttttgctcagaat
atttgtagttgacaaatgtgtgtgtatgtttgtgcatgtgtgtgtgcgtg
tgtgcgtgcgtgtgtgcgtgcatgtgtgtgtgtgtgtgtgcgtgtgtgtg
tttgtgtatgtgtgtgtgtgtgtatg
gaattctggggaagaaaatctcagtcctctttaaaaggatatactattct
tcctagctcattaacactgcttaagatgacactgccttccttgtgatggt
cctgtcttcctgagaggtggcatcttcccctcttataaacgcacctctcc
ttgaactacagccattgtttgttttcactgacatccacattctttatcta
ataacttgctgtgctcctgtcaatattgtaagaaacaagttgttttcagc
actgaggtggatgaaatggtccaaatattgtcctgtggttgaaattattt
cattccttttcatgttattgtgtctaaaactagactagtgtgttgttaga
tggaacaaatgttacagttcccttgtttgtaaatatcaacctacgactag
aaaaccaatcttaaaatattgtatagtgtaaacttccctaagattattct
atgtttcataataattcatagttactttagagtttatcaccaacttagat
ccacctatattgctattatgaactttgtataaactttctatgttagtaat
tcaaacttttaaaagattatctagaaaataaatactatataacaactcac
tgatttgccataaaaaccttccatttaaaaaaagttactaaactgaaaat
taattacaagaaaattagtaacttgagtatttactagtaggaatgcctgg
tgttatcaagtcataatttttctgacatattgttttatttttttgtctca
caggttgtggcagaatgaatgagaaaaaactggtaattgaatgaaccctg
gaacatttaatattctttctaataataagaatttggtgacaaagaaactg
tcatatctgttattatatatacaaaattgacttgaacaacacagacattt
gcacattttctttaactctgttgaatagtttaatataactcatttctgaa
atatctgggtaaagtagcttaaccaaaatactaagcagggacagagtgga
gaaattatagagctgaaatatttgctaaaaacattgcaacacagtcttta
gttgagagattatcatgctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106167709_106168000
seq2: B6Ng01-345H12.b_107_216 (reverse)

seq1  CATACACACACACATGCACTCACTGAAATGTACACACATACACACACATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATACACACATGCACTCATACTCAAATGTACACACATATACACACATGCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACACATGCACAAACACACACATGCATATGCACGCATGTACATATATA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CACAAATATGCATACACACATGCACACAGAGGCACACACACACATGCACT  200
                ||||||||||  |||||| |  || ||||||||| |||| 
seq2  ----------CATACACACACACACACATACACAAACACACACACGCACA  40

seq1  CACACACACATATATCCACACGCACATACAAACACACATACATATGTATC  250
      |||||||||| | || ||| | ||||  ||  |||||             
seq2  CACACACACACACATGCACGCACACACGCACGCACAC-------------  77

seq1  CGTGCATGTACACACACACACATGCACATACAAACACACACA  292
               || |||||||||||||||| ||| |||||||||
seq2  ---------ACGCACACACACATGCACAAACATACACACACA  110

seq1: chr12_96271449_96272530
seq2: B6Ng01-345H12.g_66_1137

seq1  GAATTCTGGGGAAGAAAATCTCAGTCCTCTTTAAAAGGATATACTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAAGAAAATCTCAGTCCTCTTTAAAAGGATATACTATTCT  50

seq1  TCCTAGCTCATTAACACTGCTTAAGATGACACTGCCTTCCTTGTGATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTCATTAACACTGCTTAAGATGACACTGCCTTCCTTGTGATGGT  100

seq1  CCTGTCTTCCTGAGAGGTGGCATCTTCCCCTCTTATAAACGCACCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTCCTGAGAGGTGGCATCTTCCCCTCTTATAAACGCACCTCTCC  150

seq1  TTGAACTACAGCCATTGTTTGTTTTCACTGACATCCACATTCTTTATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTACAGCCATTGTTTGTTTTCACTGACATCCACATTCTTTATCTA  200

seq1  ATAACTTGCTGTGCTCCTGTCAATATTGTAAGAAACAAGTTGTTTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGCTGTGCTCCTGTCAATATTGTAAGAAACAAGTTGTTTTCAGC  250

seq1  ACTGAGGTGGATGAAATGGTCCAAATATTGTCCTGTGGTTGAAATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTGGATGAAATGGTCCAAATATTGTCCTGTGGTTGAAATTATTT  300

seq1  CATTCCTTTTCATGTTATTGTGTCTAAAACTAGACTAGTGTGTTGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTTCATGTTATTGTGTCTAAAACTAGACTAGTGTGTTGTTAGA  350

seq1  TGGAACAAATGTTACAGTTCCCTTGTTTGTAAATATCAACCTACGACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAATGTTACAGTTCCCTTGTTTGTAAATATCAACCTACGACTAG  400

seq1  AAAACCAATCTTAAAATATTGTATAGTGTAAACTTCCCTAAGATTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATCTTAAAATATTGTATAGTGTAAACTTCCCTAAGATTATTCT  450

seq1  ATGTTTCATAATAATTCATAGTTACTTTAGAGTTTATCACCAACTTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATAATAATTCATAGTTACTTTAGAGTTTATCACCAACTTAGAT  500

seq1  CCACCTATATTGCTATTATGAACTTTGTATAAACTTTCTATGTTAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATATTGCTATTATGAACTTTGTATAAACTTTCTATGTTAGTAAT  550

seq1  TCAAACTTTTAAAAGATTATCTAGAAAATAAATACTATATAACAACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTTTAAAAGATTATCTAGAAAATAAATACTATATAACAACTCAC  600

seq1  TGATTTGCCATAAAAACCTTCCATTTAAAAAAAGTTACTAAACTGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCCATAAAAACCTTCCATTTAAAAAAAGTTACTAAACTGAAAAT  650

seq1  TAATTACAAGAAAATTAGTAACTTGAGTATTTACTAGTAGGAATGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACAAGAAAATTAGTAACTTGAGTATTTACTAGTAGGAATGCCTGG  700

seq1  TGTTATCAAGTCATAATTTTTCTGACATATTGTTTTATTTTTTTGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCAAGTCATAATTTTTCTGACATATTGTTTTATTTTTTTGTCTCA  750

seq1  CAGGTTGTGGCAGAATGAATGAGAAAAAACTGGTAATTGAATGAACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTGGCAGAATGAATGAGAAAAAACTGGTAATTGAATGAACCCTG  800

seq1  GAACATTTAATATTCTTTCTAATAATAAGAATTTGGTGACAAAGAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAATATTCTTTCTAATAATAAGAATTTGGTGACAAAGAAACTG  850

seq1  TCATATCTGTTATTATATATACAAAATTGACTTGAACAACACAGACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGTTATTATATATACAAAATTGACTTGAACAACACAGACATTT  900

seq1  GCACATTTTCTTTAACTCTGTTGAATAGTTTAATATAACTCATTTCTGAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCACATTTTCTTTAACTCTGTTGAATAGTTTAATATAACTCATTTCTG-A  949

seq1  AATATCTGGGTAAAGTAGCTTAACCAAAAATACTAAGCAGGGACAGAAGT  1000
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  AATATCTGGGTAAAGTAGCTTAACC-AAAATACTAAGCAGGGACAG-AGT  997

seq1  GGAAGAAATTATAGAGCTGAAATATTTGCCTAAAAACATTGCAAACCACA  1050
      || ||||||||||||||||||||||||| |||||||||||||||  ||||
seq2  GG-AGAAATTATAGAGCTGAAATATTTG-CTAAAAACATTGCAA--CACA  1043

seq1  GCCTTTAAGTGGAGAGATTTATCATGGCTGAC  1082
      | |||| ||| |||||| ||||||| ||||||
seq2  GTCTTT-AGTTGAGAGA-TTATCAT-GCTGAC  1072