BAC Information

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BAC

Clone NameB6Ng01-346A07
Chromosome12 (Build37)
Map Location 113,832,075 - 113,932,278
singlet/doubletdoublet
Overlap gene2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
Upstream geneMark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179
Downstream geneAW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346A07.bB6Ng01-346A07.g
ACCGA128039GA128040
length5911,092
definitionB6Ng01-346A07.b B6Ng01-346A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,832,075 - 113,832,670)(113,931,168 - 113,932,278)
sequence
taggatgacccccgtgggcacgaacccttgagtgcagccctgcagatgca
aggaagttgaggtgaagagctgggatctgtagcccacagccgtcaccctg
ccttcctccctgaggagcctggcaaacccagaaccccatatctgctatcc
ttccacggaaggggctcagccacaggggaactccccagcccatgtgctca
gaaagcgccctcacagatgggtcgcttcacgtcagagggggccaggctat
ctgagtatacactgacaggtacttcacctttgtccatggacttatgcagc
tggggagtcaggctgagaaaggggcccctctagtgacattgcgagttctg
ggacagcttgagtccccacagcatcccagagagggtggaagtgaaagcag
cttcctgccgtgggtgcctccacccttcctgtctccacgttgcctgaggg
gaggagggcagtctgagaccacccccagcctgcccacagaatcccagaca
ggccgatgcctggcaccagctgctttgtgcagaccttcctcctagagagc
agtgtcagaggggtgtccccttagccctagcaagcacttcc
gaattcttttccacagcaatctttttactgtggagaagccacatgcttct
gaacttcctgtcagctgtctgcaacatcatggtgaggacctggtaagtct
acagcagctcctctgtcttaggttctgctgtcacaatggtggtctcagca
tcccatcgacagggaagcaaccattaattctatggatcgccttcctccct
ccctcatttccacagctacgcacaatgaggtgtcaggccctcctaacagc
tctgcagacacaaagctgaacacatcccacgaggaccccgccctcgcgga
cgctccaaggcacgagtgactaaaggaggcacgggtcgagcaggaaccag
cttctccaaggctcgcgcttccacccggcgttcctggcggccacactgcc
cggaggccgcgtgacgccagaacgcggggcgtgaggagtgcgcctgcgcg
aaggggctgcgcgtgcgcagcgagtgtgcagaaggccgggagtgttcagg
gtcgtgaggtggaactctaccgctgtcgccacggtgtcctggcgagtgct
gcgccggctctgtccggcggaagttgccggtcggtgcgaacgagcgtcct
ttggtcacaactggctctggtgtcagccgaggctgctcccttgatccatc
caggagagacaaggacccacgtctgagtgccgaagggcagaggcataggg
ctgcgcttcgcgggtgattgttcccctataagggccctgcctcccctggc
tcccgggccccagactcctaaagctcctctggtcccaagctccctagatc
cccaagtcctaactacttttctagaccccagtttctcagaccctaaaact
ctaagatcgctggctgcctagaatcttaagtcttcagagtatctggcctc
cagcttcccagactctcagtccttaggtcccccaaaccccagcttctcat
atccaagccataaggactcagcctgcagcttccagccttagacagtcgag
agacagtctcgagagaatagacagtgcaaaggtgaagctcctgccccctg
atctttgagaaggttcatttcgagtacccttagagagggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113832075_113832670
seq2: B6Ng01-346A07.b_44_640

seq1  GAATTCTAGGATGACCCCCGTGGGCACGAACCCTTGAGTGCAGCCCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGATGACCCCCGTGGGCACGAACCCTTGAGTGCAGCCCTGCA  50

seq1  GATGCAAGGAAGTTGAGGTGAAGAGCTGGGATCTGTAGCCCACAGCCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAGGAAGTTGAGGTGAAGAGCTGGGATCTGTAGCCCACAGCCGTC  100

seq1  ACCCTGCCTTCCTCCCTGAGGAGCCTGGCAAACCCAGAACCCCATATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCTTCCTCCCTGAGGAGCCTGGCAAACCCAGAACCCCATATCTG  150

seq1  CTATCCTTCCACGGAAGGGGCTCAGCCACAGGGGAACTCCCCAGCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTCCACGGAAGGGGCTCAGCCACAGGGGAACTCCCCAGCCCATG  200

seq1  TGCTCAGAAAGCGCCCTCACAGATGGGTCGCTTCACGTCAGAGGGGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAAAGCGCCCTCACAGATGGGTCGCTTCACGTCAGAGGGGGCCA  250

seq1  GGCTATCTGAGTATACACTGACAGGTACTTCACCTTTGTCCATGGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTGAGTATACACTGACAGGTACTTCACCTTTGTCCATGGACTTA  300

seq1  TGCAGCTGGGGAGTCAGGCTGAGAAAGGGGCCCCTCTAGTGACATTGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGGGGAGTCAGGCTGAGAAAGGGGCCCCTCTAGTGACATTGCGA  350

seq1  GTTCTGGGACAGCTTGAGTCCCCACAGCATCCCAGAGAGGGTGGAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGACAGCTTGAGTCCCCACAGCATCCCAGAGAGGGTGGAAGTGA  400

seq1  AAGCAGCTTCCTGCCGTGGGTGCCTCCACCCTTCCTGTCTCCACGTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTCCTGCCGTGGGTGCCTCCACCCTTCCTGTCTCCACGTTGCC  450

seq1  TGAGGGGAGGAGGGCAGTCTGAGACCA-CCCCAGCCTGCCCACAGAATCC  499
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGGGGAGGAGGGCAGTCTGAGACCACCCCCAGCCTGCCCACAGAATCC  500

seq1  CAGACAGGCCGATGCCTGGCACCAGCTGCTTTGTGCAGACCTTCCTCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGCCGATGCCTGGCACCAGCTGCTTTGTGCAGACCTTCCTCCTA  550

seq1  GAGAGCAGTGTCAGAGGGGTGTCCCCTTAGCCCTAGCAAGCACTTCC  596
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGTGTCAGAGGGGTGTCCCCTTAGCCCTAGCAAGCACTTCC  597

seq1: chr12_113931168_113932278
seq2: B6Ng01-346A07.g_69_1160 (reverse)

seq1  CTACCCTTCCTCTAGGGGTACTCCGAAATGGACC-TCTCAAAGATCCAAG  49
      |||||||  ||||| ||||||| ||||||| ||| |||||||||||    
seq2  CTACCCT--CTCTAAGGGTACT-CGAAATGAACCTTCTCAAAGATC---A  44

seq1  GGGGGCAGGGAGCCTTCACCTTTGCACTGTCTTATTCTCTCGAAGGAACT  99
      ||||||| |||| |||||||||||||||||| |||||||||||    |||
seq2  GGGGGCA-GGAG-CTTCACCTTTGCACTGTC-TATTCTCTCGA---GACT  88

seq1  GTCCTCTCGACTGTCTTAAGGCTTGGAAGCTGCAGGCCTGAGTCCTTATG  149
      || |||||||||||| |||||| ||||||||||||| |||||||||||||
seq2  GT-CTCTCGACTGTC-TAAGGC-TGGAAGCTGCAGG-CTGAGTCCTTATG  134

seq1  GCTTGGGATATTGAGAAGCTGGGGGTTTGGGGGACCTTAAGGACTGAGAG  199
      |||| ||||| ||||||||| ||||||||||||||| |||||||||||||
seq2  GCTT-GGATA-TGAGAAGCT-GGGGTTTGGGGGACC-TAAGGACTGAGAG  180

seq1  TCTGGGAAGCTGGAGGCCAGATACTCTGAAGACTTAAGATTCTAGGCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGCTGGAGGCCAGATACTCTGAAGACTTAAGATTCTAGGCAGC  230

seq1  CAGCGATCTTAGAGTTTTAGGGTCTGAGAAACTGGGGTCTAGAAAAGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATCTTAGAGTTTTAGGGTCTGAGAAACTGGGGTCTAGAAAAGTAG  280

seq1  TTAGGACTTGGGGATCTAGGGAGCTTGGGACCAGAGGAGCTTTAGGAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTTGGGGATCTAGGGAGCTTGGGACCAGAGGAGCTTTAGGAGTC  330

seq1  TGGGGCCCGGGAGCCAGGGGAGGCAGGGCCCTTATAGGGGAACAATCACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCCGGGAGCCAGGGGAGGCAGGGCCCTTATAGGGGAACAATCACC  380

seq1  CGCGAAGCGCAGCCCTATGCCTCTGCCCTTCGGCACTCAGACGTGGGTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAAGCGCAGCCCTATGCCTCTGCCCTTCGGCACTCAGACGTGGGTCC  430

seq1  TTGTCTCTCCTGGATGGATCAAGGGAGCAGCCTCGGCTGACACCAGAGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCCTGGATGGATCAAGGGAGCAGCCTCGGCTGACACCAGAGCC  480

seq1  AGTTGTGACCAAAGGACGCTCGTTCGCACCGACCGGCAACTTCCGCCGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGACCAAAGGACGCTCGTTCGCACCGACCGGCAACTTCCGCCGGA  530

seq1  CAGAGCCGGCGCAGCACTCGCCAGGACACCGTGGCGACAGCGGTAGAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCGGCGCAGCACTCGCCAGGACACCGTGGCGACAGCGGTAGAGTT  580

seq1  CCACCTCACGACCCTGAACACTCCCGGCCTTCTGCACACTCGCTGCGCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACGACCCTGAACACTCCCGGCCTTCTGCACACTCGCTGCGCAC  630

seq1  GCGCAGCCCCTTCGCGCAGGCGCACTCCTCACGCCCCGCGTTCTGGCGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGCCCCTTCGCGCAGGCGCACTCCTCACGCCCCGCGTTCTGGCGTC  680

seq1  ACGCGGCCTCCGGGCAGTGTGGCCGCCAGGAACGCCGGGTGGAAGCGCGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGCCTCCGGGCAGTGTGGCCGCCAGGAACGCCGGGTGGAAGCGCGA  730

seq1  GCCTTGGAGAAGCTGGTTCCTGCTCGACCCGTGCCTCCTTTAGTCACTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGAAGCTGGTTCCTGCTCGACCCGTGCCTCCTTTAGTCACTCG  780

seq1  TGCCTTGGAGCGTCCGCGAGGGCGGGGTCCTCGTGGGATGTGTTCAGCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGGAGCGTCCGCGAGGGCGGGGTCCTCGTGGGATGTGTTCAGCTT  830

seq1  TGTGTCTGCAGAGCTGTTAGGAGGGCCTGACACCTCATTGTGCGTAGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGCAGAGCTGTTAGGAGGGCCTGACACCTCATTGTGCGTAGCTG  880

seq1  TGGAAATGAGGGAGGGAGGAAGGCGATCCATAGAATTAATGGTTGCTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGAGGGAGGGAGGAAGGCGATCCATAGAATTAATGGTTGCTTCC  930

seq1  CTGTCGATGGGATGCTGAGACCACCATTGTGACAGCAGAACCTAAGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGATGGGATGCTGAGACCACCATTGTGACAGCAGAACCTAAGACAG  980

seq1  AGGAGCTGCTGTAGACTTACCAGGTCCTCACCATGATGTTGCAGACAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCTGTAGACTTACCAGGTCCTCACCATGATGTTGCAGACAGCT  1030

seq1  GACAGGAAGTTCAGAAGCATGTGGCTTCTCCACAGTAAAAAGATTGCTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAGTTCAGAAGCATGTGGCTTCTCCACAGTAAAAAGATTGCTGT  1080

seq1  GGAAAAGAATTC  1111
      ||||||||||||
seq2  GGAAAAGAATTC  1092