BAC Information

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BAC

Clone NameB6Ng01-346B06
Chromosome12 (Build37)
Map Location 61,733,450 - 61,823,751
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665644, EG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346B06.bB6Ng01-346B06.g
ACCGA128083GA128084
length1,1511,117
definitionB6Ng01-346B06.b B6Ng01-346B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,733,450 - 61,734,096)(61,822,854 - 61,823,751)
sequence
gaattcatgtccactgatacatcatcgagtgctctttgccgacatttcat
atctccagccttcaattcgttccatttttttcaccggtctctagattaaa
aattcccaaattcatattggagaaatggcccaggctaaaaagctcttgct
gtacaaacataatgaccgcatgttggatccctaaatcccatctcattctg
accccaccaacccatgtttgcacacccttaactgctgcgggaaagtggag
ctacttggatccctgatgacccatgaccactctgtgttttactcattttt
tttattatgctttgttgttttggtagaagaggccaagaagaaaagtcata
cgttctaaggggaaatccactactttttttctggtcaataatcttatctt
tgaaagtactcctaatgacctattgctttacacatacatctttgtctctc
tcattttttatttcagaagctgtttgttggtttcgttggttgttgttgtt
gtatctgttttctaattggtgtcaaaatggtgatatttagtgagcaaaaa
agtttcattttcattttattttggttttcagataccaaggcctggtatat
aagtcaaatctaaaatgatagattaaattacaagaaagcagtataaaaat
ttaagcctagaaaaatcaatcaatttggacatgattaattctcaattatt
agtagcaattacaaaactcagtgctccaagttttgttcacaattccatga
agttatataatcaatttctgcatcttatattaaataatacctcttctaac
actgagtaaaaagaagtggtgtggttaaaatagtgtgtcctgtgggaaaa
gcagcattgtgttgtaaatgagcaatcatttcctcttttgacacagttag
acatgtaaggcttacaaatacatttattccataggcacatgtcttcaaag
ttcaataggtagcaaatataaaattaaaattaaagttaagaaattggaga
agagtaggaaagaaagtagaccaaatcctattacagaaaggattgttgca
taggtaaagatgcatcgagaatgatttattggaggttactatgcttaata
taaattggaaggagaagctttggtctgtgaaagttcgatgcctcagtgta
g
gaattccatcagagacttaagaggttcacaataaaaccctgtctctggaa
caaaataaataagttagtccctaaataaattactagatagatatatgcct
cctctctttgccctcagaaatgacaacaagctgggtgagtggtggcacat
ctgctccttgattgcttgggggacctatgctttctctcatgagctccatg
cttgacactcttttttttgggggggggggtgtcaaattagaataatttat
gatatctttgtaagaaatctcagtgcctattttcaatttttattgttata
aagcctctaaaagatcatgtataaatctcaaatattcaaagccaaatagt
agtttctgtaaaaaaaaaaaaaaagaaagaaaaagatgtgaaaataagca
ttagaagcataaaagagtctaatatattatttttaatatatttcaaatta
aaaccttataatttagaagttttgtgttgcaaagtttgcttttgatggtt
ttcacttctaagttatgattacacatgctataaatttttcatttgcaaag
tctagttttaggagaggtcacctcaaagccattcaattagctaaaggtag
tacctattaattaactcttggggtaacagtaatgattgcatttcattgtt
tgctgtcatctggcccaaaacagactttcattatcatttccacattccca
agtacctcaaataaacttatcttatatattgttttcatgattatttgcca
tgcatatgtgatctagctacttaatttatttctgagtttgttgttgactc
tgcataatgatggcaaatttaagagtacagagagaaaggcaaaaatatgc
tagaaaaaaaggatttcaaagtaattaaataatttttaatgtgcttacaa
atgacttgaaatctcattaggaaaattagggtaaaatctcagttatgttc
taacaaattatgaaaacaaaatgattctgttttgtgcttttagtgaatat
gaacttaatttgactagtatatccattattgtctttgcctactggtttca
tgacaatataccctaagcaaaatgttataataacaactagatttcctacc
gaatataagctgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61733450_61734096
seq2: B6Ng01-346B06.b_544_1193

seq1  TATCT-ATTTCTAATT-TTGTCAAAATGGTGATATTTAGTGAGCAAAAAA  48
      |||||  |||||||||  ||||||||||||||||||||||||||||||||
seq2  TATCTGTTTTCTAATTGGTGTCAAAATGGTGATATTTAGTGAGCAAAAAA  50

seq1  GTTTCATTTTCATTTTATTTTGGTTTTCAGATACCAAGGCCTGGTATATA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTTCATTTTATTTTGGTTTTCAGATACCAAGGCCTGGTATATA  100

seq1  AGTCAAATCTAAAATGATAGATTAAATTACAAGAAAGCAGTATAAAAATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATCTAAAATGATAGATTAAATTACAAGAAAGCAGTATAAAAATT  150

seq1  TAAGCCTAGAAAAATCAATCAATTTGGACATGATTAATTCTCAATTATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTAGAAAAATCAATCAATTTGGACATGATTAATTCTCAATTATTA  200

seq1  GTAGCAATTACAAAACTCAGTGCTCCAAGTTTTGTTCACAATTCCATGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATTACAAAACTCAGTGCTCCAAGTTTTGTTCACAATTCCATGAA  250

seq1  GTTATATAATCAATTTCTGCATCTTATATTAAATAATACCTCTTCTAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAATCAATTTCTGCATCTTATATTAAATAATACCTCTTCTAACA  300

seq1  CTGAGTAAAAAGAAGTGGTGTGGTTAAAATAGTGTGTCCTGTGGGAAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAAAAAGAAGTGGTGTGGTTAAAATAGTGTGTCCTGTGGGAAAAG  350

seq1  CAGCATTGTGTTGTAAATGAGCAATCATTTCCTC-TTTGACACAGTTAGA  397
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGCATTGTGTTGTAAATGAGCAATCATTTCCTCTTTTGACACAGTTAGA  400

seq1  CATGTAAGGCTTACAAATACA-TTATTCCATAGGCACATGTCTTCAAAGT  446
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATGTAAGGCTTACAAATACATTTATTCCATAGGCACATGTCTTCAAAGT  450

seq1  TCAATAGGTAGCAAATATAAAAATTAAAATTAAAGTTAAGAAATTGGAGA  496
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAATAGGTAGCAAATAT-AAAATTAAAATTAAAGTTAAGAAATTGGAGA  499

seq1  AGAGTAAGAAAGAAAGTAGACCAAATCCTATTACAGAAAGGA-TGTTGCA  545
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGTAGGAAAGAAAGTAGACCAAATCCTATTACAGAAAGGATTGTTGCA  549

seq1  ATAGTAAAGATGCATCGAG-ATGATTTAATTGGAGGTTACTATGCTTAAA  594
         |||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  TAGGTAAAGATGCATCGAGAATGATTT-ATTGGAGGTTACTATGCTTAAT  598

seq1  ATTAA-TGGAAGGAGAGGCCTTTGGTCCTGTGAAGGCTCGATGCCCCAGT  643
      || || |||||||||| | ||||||| ||||||| | |||||||| ||||
seq2  ATAAATTGGAAGGAGAAG-CTTTGGT-CTGTGAAAGTTCGATGCCTCAGT  646

seq1  GTAG  647
      ||||
seq2  GTAG  650

seq1: chr12_61822854_61823751
seq2: B6Ng01-346B06.g_295_1180 (reverse)

seq1  CAGAACAGGCTTATAATCGGTAAGAAATCTAGTTTGGTTATTTATAAACC  50
      ||||||| ||||||| |||||| |||||||||||  |||| ||||||  |
seq2  CAGAACA-GCTTATATTCGGTAGGAAATCTAGTT--GTTA-TTATAA--C  44

seq1  ATTTTGCTTAGGGTATATTGTCATTGAAACCCAAGTAGGCAAAGACAATA  100
      ||||||||||||||||||||||| |||||||  |||||||||||||||||
seq2  ATTTTGCTTAGGGTATATTGTCA-TGAAACC--AGTAGGCAAAGACAATA  91

seq1  ATGAATATAACTAGTCAAATTAAGTTCATATTCACTAAAAGCACAAAACA  150
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAT-ACTAGTCAAATTAAGTTCATATTCACTAAAAGCACAAAACA  140

seq1  GAATCATTTTGTTTTCAATAATTTGTTAGAAACATAACTGAGATTTTACC  200
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GAATCATTTTGTTTTC-ATAATTTGTTAG-AACATAACTGAGATTTTACC  188

seq1  CTAATTTTCCTAATGAGATTTCAAGTCATTTGTAAGCACATTAAAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTCCTAATGAGATTTCAAGTCATTTGTAAGCACATTAAAAATTA  238

seq1  TTTAATTACTTTGAAATCCTTTTTTTCTAGCATATTTTTGCCTTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACTTTGAAATCCTTTTTTTCTAGCATATTTTTGCCTTTCTCTC  288

seq1  TGTACTCTTAAATTTGCCATCATTATGCAGAGTCAACAACAAACTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTTAAATTTGCCATCATTATGCAGAGTCAACAACAAACTCAGAA  338

seq1  ATAAATTAAGTAGCTAGATCACATATGCATGGCAAATAATCATGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAGTAGCTAGATCACATATGCATGGCAAATAATCATGAAAACA  388

seq1  ATATATAAGATAAGTTTATTTGAGGTACTTGGGAATGTGGAAATGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAGATAAGTTTATTTGAGGTACTTGGGAATGTGGAAATGATAAT  438

seq1  GAAAGTCTGTTTTGGGCCAGATGACAGCAAACAATGAAATGCAATCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTGTTTTGGGCCAGATGACAGCAAACAATGAAATGCAATCATTA  488

seq1  CTGTTACCCCAAGAGTTAATTAATAGGTACTACCTTTAGCTAATTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCCCAAGAGTTAATTAATAGGTACTACCTTTAGCTAATTGAATG  538

seq1  GCTTTGAGGTGACCTCTCCTAAAACTAGACTTTGCAAATGAAAAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGGTGACCTCTCCTAAAACTAGACTTTGCAAATGAAAAATTTAT  588

seq1  AGCATGTGTAATCATAACTTAGAAGTGAAAACCATCAAAAGCAAACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGTAATCATAACTTAGAAGTGAAAACCATCAAAAGCAAACTTTG  638

seq1  CAACACAAAACTTCTAAATTATAAGGTTTTAATTTGAAATATATTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAAACTTCTAAATTATAAGGTTTTAATTTGAAATATATTAAAAA  688

seq1  TAATATATTAGACTCTTTTATGCTTCTAATGCTTATTTTCACATCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTAGACTCTTTTATGCTTCTAATGCTTATTTTCACATCTTTTT  738

seq1  CTTTCTTTTTTTTTTTTTTTACAGAAACTACTATTTGGCTTTGAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTTTTTTTTTACAGAAACTACTATTTGGCTTTGAATATTT  788

seq1  GAGATTTATACATGATCTTTTAGAGGCTTTATAACAATAAAAATTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTATACATGATCTTTTAGAGGCTTTATAACAATAAAAATTGAAAA  838

seq1  TAGGCACTGAGATTTCTTACAAAGATATCATAAATTATTCTAATTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACTGAGATTTCTTACAAAGATATCATAAATTATTCTAATTTGA  886