BAC Information

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BAC

Clone NameB6Ng01-346K12
Chromosome12 (Build37)
Map Location 33,730,501 - 33,829,278
singlet/doubletdoublet
Overlap gene1110049B09Rik
Upstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109
Downstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346K12.bB6Ng01-346K12.g
ACCGA128492GA128493
length7291,182
definitionB6Ng01-346K12.b B6Ng01-346K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,828,552 - 33,829,278)(33,730,501 - 33,731,699)
sequence
gaattctgaagattgttttccttctggtaatgaaaggatggatcacagag
attcccattacacagtgccttgggcattctctctcctgtttattcttctc
actgtgacagatcccctttaaagaaggaagggtttgtgctggtttgaact
cctagaccccagtgggtcgaactatgtgggaaggagtttgaggaggtgta
tcactttggggtgggggtctttgaggctaaaaacgcccggccattcccag
ttagctctttctgtcttgtggatgtatttcaagatgtgagctttcggctg
agatttcaatgccatgcctgctgccctgccccccactgtgatcaactcag
actcaccctctgaagctgtgagcccccaggtaaggtcttttataagttgc
cttggtgttgatgtcttatctcagcaataaaaccataactaaggcgagtt
tattgtaactctgtccccaaatctgataccattttccaaaccattttcaa
tacatttactgacacatctattattataggtgtaaggataccgctgtgta
tgtttaaaaggtgaatttatggtcatttttcctgcgcatttttctttcct
ttctgtgtttctgcctgggagttatggacacacatatgtgtgtgaagacc
agaggcacaccctacatgctgtttctcaggagctatccaccttggttttt
gtttgctgttgttgttgttttttgttgtt
gaattcaccccacctgcttcctacacacacgtacacacgcatgcactcgc
gtgcgcgtgcacacacacacactcacacacacacacacacatgcacacag
ctctgttgggacccacaacttgaaggtgcccagggcaagaagaacgccag
cccaagcatggctcttgctcatcctccagtgtctccagagtcattacagg
ctgaaaaatcaggaaatggagcagatgatgcaatttttacttcctcagca
gcgcaaggctcggtaaagtcctcgggacactcagtgtggattagctccac
cctcagcaggcagctgaggtctccaggcgctgtctgcccctgggttttgt
ggcacaccaggctcagaggtttcccactgctttgccaggctcagcgggcg
gcagaggcggattttgagtctttcatgtggaattgctctgcttattgggg
tttaaatctctggccccggcacttcattagaggagctattttggtctcat
ttccattgaggggtgctcttccccccctccttcccatggtggcatatttt
taaagagagagaatgaatggagtggagaagtgttgctgaggacatgtttc
agaacgcatttaatctatttaatctattcttatccccagagaggcctggg
agtcccttccccccacagcacttttccaggaaaagaggtagctgaagaga
ggaaataaaaaaatattatattcaatatattctgggaatttggggagagc
attctattaaaaggattcatccttcctggggctttgcaacaccgtgtggg
ggtgagtctggttgtggaatatccggatagactagatgagacagagaagc
tgacagcgctgggaagcacagggaagcttggattcttcatgtaaaatatg
ccctccccagcactgtgcccaccgcagtgtatatctaagacccgctgcct
tgttccttcccgaatgggcccaggattgtgatactgagcccagtacctga
gccaatggagtatcgaaaagaactggggctagaatcaggtcagtgcacgt
cagctgaaattctgatgtttgttgcaacttagaatccacttggatggcat
gaagtaaaattttgaaatacatactgctttcatcatttctcgaggatgtc
cgtaaccttagaacagcagagtgttagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33828552_33829278
seq2: B6Ng01-346K12.b_45_773 (reverse)

seq1  AACAACAAAAAACAACAACAACAGCAA--CAAAACCAAGGTGGATAGCTC  48
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  AACAACAAAAAACAACAACAACAGCAAACAAAAACCAAGGTGGATAGCTC  50

seq1  CTGAGAAACAGCATGTAGGGTGTGCCTCTGGTCTTCACACACATATGTGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAACAGCATGTAGGGTGTGCCTCTGGTCTTCACACACATATGTGT  100

seq1  GTCCATAACTCCCAGGCAGAAACACAGAAAGGAAAGAAAAATGCGCAGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAACTCCCAGGCAGAAACACAGAAAGGAAAGAAAAATGCGCAGGA  150

seq1  AAAATGACCATAAATTCACCTTTTAAACATACACAGCGGTATCCTTACAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACCATAAATTCACCTTTTAAACATACACAGCGGTATCCTTACAC  200

seq1  CTATAATAATAGATGTGTCAGTAAATGTATTGAAAATGGTTTGGAAAATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATAATAGATGTGTCAGTAAATGTATTGAAAATGGTTTGGAAAATG  250

seq1  GTATCAGATTTGGGGACAGAGTTACAATAAACTCGCCTTAGTTATGGTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGATTTGGGGACAGAGTTACAATAAACTCGCCTTAGTTATGGTTT  300

seq1  TATTGCTGAGATAAGACATCAACACCAAGGCAACTTATAAAAGACCTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGAGATAAGACATCAACACCAAGGCAACTTATAAAAGACCTTAC  350

seq1  CTGGGGGCTCACAGCTTCAGAGGGTGAGTCTGAGTTGATCACAGTGGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTCACAGCTTCAGAGGGTGAGTCTGAGTTGATCACAGTGGGGG  400

seq1  GCAGGGCAGCAGGCATGGCATTGAAATCTCAGCCGAAAGCTCACATCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGCAGGCATGGCATTGAAATCTCAGCCGAAAGCTCACATCTTG  450

seq1  AAATACATCCACAAGACAGAAAGAGCTAACTGGGAATGGCCGGGCGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCCACAAGACAGAAAGAGCTAACTGGGAATGGCCGGGCGTTTT  500

seq1  TAGCCTCAAAGACCCCCACCCCAAAGTGATACACCTCCTCAAACTCCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCAAAGACCCCCACCCCAAAGTGATACACCTCCTCAAACTCCTTC  550

seq1  CCACATAGTTCGACCCACTGGGGTCTAGGAGTTCAAACCAGCACAAACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGTTCGACCCACTGGGGTCTAGGAGTTCAAACCAGCACAAACCC  600

seq1  TTCCTTCTTTAAAGGGGATCTGTCACAGTGAGAAGAATAAACAGGAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTAAAGGGGATCTGTCACAGTGAGAAGAATAAACAGGAGAGA  650

seq1  GAATGCCCAAGGCACTGTGTAATGGGAATCTCTGTGATCCATCCTTTCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCAAGGCACTGTGTAATGGGAATCTCTGTGATCCATCCTTTCAT  700

seq1  TACCAGAAGGAAAACAATCTTCAGAATTC  727
      |||||||||||||||||||||||||||||
seq2  TACCAGAAGGAAAACAATCTTCAGAATTC  729

seq1: chr12_33730501_33731699
seq2: B6Ng01-346K12.g_68_1249

seq1  GAATTCACCCCACCTGCTTCCTACACACACGTACACACGCATGCACTCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCACCTGCTTCCTACACACACGTACACACGCATGCACTCGC  50

seq1  GTGCGCGTGCACACACACACACTCACACACACACACACACATGCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCGTGCACACACACACACTCACACACACACACACACATGCACACAG  100

seq1  CTCTGTTGGGACCCACAACTTGAAGGTGCCCAGGGCAAGAAGAACGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGGGACCCACAACTTGAAGGTGCCCAGGGCAAGAAGAACGCCAG  150

seq1  CCCAAGCATGGCTCTTGCTCATCCTCCAGTGTCTCCAGAGTCATTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCATGGCTCTTGCTCATCCTCCAGTGTCTCCAGAGTCATTACAGG  200

seq1  CTGAAAAATCAGGAAATGGAGCAGATGATGCAATTTTTACTTCCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATCAGGAAATGGAGCAGATGATGCAATTTTTACTTCCTCAGCA  250

seq1  GCGCAAGGCTCGGTAAAGTCCTCGGGACACTCAGTGTGGATTAGCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAGGCTCGGTAAAGTCCTCGGGACACTCAGTGTGGATTAGCTCCAC  300

seq1  CCTCAGCAGGCAGCTGAGGTCTCCAGGCGCTGTCTGCCCCTGGGTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCAGGCAGCTGAGGTCTCCAGGCGCTGTCTGCCCCTGGGTTTTGT  350

seq1  GGCACACCAGGCTCAGAGGTTTCCCACTGCTTTGCCAGGCTCAGCGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCAGGCTCAGAGGTTTCCCACTGCTTTGCCAGGCTCAGCGGGCG  400

seq1  GCAGAGGCGGATTTTGAGTCTTTCATGTGGAATTGCTCTGCTTATTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCGGATTTTGAGTCTTTCATGTGGAATTGCTCTGCTTATTGGGG  450

seq1  TTTAAATCTCTGGCCCCGGCACTTCATTAGAGGAGCTATTTTGGTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTCTGGCCCCGGCACTTCATTAGAGGAGCTATTTTGGTCTCAT  500

seq1  TTCCATTGAGGGGTGCTCTTCCCCCCCTCCTTCCCATGGTGGCATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGAGGGGTGCTCTTCCCCCCCTCCTTCCCATGGTGGCATATTTT  550

seq1  TAAAGAGAGAGAATGAATGGAGTGGAGAAGTGTTGCTGAGGACATGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGAGAATGAATGGAGTGGAGAAGTGTTGCTGAGGACATGTTTC  600

seq1  AGAACGCATTTAATCTATTTAATCTATTCTTATCCCCAGAGAGGCCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCATTTAATCTATTTAATCTATTCTTATCCCCAGAGAGGCCTGGG  650

seq1  AGTCCCTTCCCCCCACAGCACTTTTCCAGGAAAAGAGGTAGCTGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTCCCCCCACAGCACTTTTCCAGGAAAAGAGGTAGCTGAAGAGA  700

seq1  GGAAATAAAAAAATATTATATTCAATATATTCTGGGAATTTGGGGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAAAAATATTATATTCAATATATTCTGGGAATTTGGGGAGAGC  750

seq1  ATTCTATTAAAAGGATTCATCCTTCCTGGGGCTTTGCAACACCGTGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTAAAAGGATTCATCCTTCCTGGGGCTTTGCAACACCGTGTGGG  800

seq1  GGTGAGTCTGGTTGTGGAATATCCGGATAGACTAGATGAGACAGAGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTCTGGTTGTGGAATATCCGGATAGACTAGATGAGACAGAGAAGC  850

seq1  TGACAGCGCTGGGAAGCACAGGGAAGCTTGGATTCTTCATGTAAAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCGCTGGGAAGCACAGGGAAGCTTGGATTCTTCATGTAAAATATG  900

seq1  CCCTCCCCAGCACTGTGCCCACCGCAGTGTATAATCTAAGACCCGCTGCC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCTCCCCAGCACTGTGCCCACCGCAGTGTAT-ATCTAAGACCCGCTGCC  949

seq1  TTGTTCCTTCCCGAAT-GGCCCAGGATTGTTGATACTGAGCCCAGTACCT  999
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTGTTCCTTCCCGAATGGGCCCAGGATTG-TGATACTGAGCCCAGTACCT  998

seq1  GAGCCAATGGAGTATCGAAAAGAACTGGGGCTAGAATCAAGGTCAGTGCA  1049
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGCCAATGGAGTATCGAAAAGAACTGGGGCTAGAATC-AGGTCAGTGCA  1047

seq1  CGTCAGCTTGAAATTCTGAATGTTTGTGCCAACTTTTAGATCCACTGGGA  1099
      ||||||| |||||||||| ||||||||  ||||||  | ||||||| |||
seq2  CGTCAGC-TGAAATTCTG-ATGTTTGTTGCAACTTAGA-ATCCACTTGGA  1094

seq1  TGGCCATGAAGTAAAAATTTGGAGTACATACTGGCTTTTCATCATTTTCT  1149
      ||| |||||||||||| |||| | |||||||||   |||||||| |||||
seq2  TGG-CATGAAGTAAAATTTTGAAATACATACTG--CTTTCATCA-TTTCT  1140

seq1  CCAAGGATGTTCACAGTAACC-TAGAACAGCAGGAAGGTGGTTTAGAATA  1198
       | |||||||   | |||||| |||||||||||    |||  ||||||||
seq2  -CGAGGATGT---CCGTAACCTTAGAACAGCAG---AGTG--TTAGAATA  1181

seq1  T  1199
      |
seq2  T  1182