BAC Information

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BAC

Clone NameB6Ng01-346M11
Chromosome12 (Build37)
Map Location 120,565,527 - 120,566,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557
Downstream geneLOC100043011, 4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M11.bB6Ng01-346M11.g
ACCGA128582GA128583
length1,1711,111
definitionB6Ng01-346M11.b B6Ng01-346M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgca
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttggat
ctttctatggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtacagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgagccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttcaacttggttgatttcacccctgagtttgattat
ttcctgccgcctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
atggaggcactcagagcttatgagtttccttcttagaatgctttcatcgt
gtcccaaaggtttggggtacgttgttgcttcatttcattaaactctaaaa
agtctttaattccttctttattccttccttgaccaaggtatcattgagaa
ggtggttgttcagtttccacgttggtggttggctttcggttattttatcg
ttaatggaagaatccagcctt
gaattcagggtaatttgactatagaggtgggatgagagatgtagctcagc
agtagaacactggctaagtatttaagaggtcttgagttttatatctttca
ccaaaaggaaaggagggagagaaagggaagacagtgagggagcagaaaca
aacaaaaaaaaacagtaaatatctttgtatgtcaaccttgagttatataa
tatgatacttattaaagtcaaaagaagttttaaaatattttcttttttta
taaataattactcaccatagagaaatgtctggaaatggtgggacatggat
ggtcactaagtactttctcattccttgcaatccttctgtcccctgctgag
gaatgattgagtcttttggccttgcttctcactcaaggcttttgtccagc
ctccatcttgggtgtgtgcaacttccattatcggctcctccacacatcac
tacagagtttccttataccacctccactatttcttcacttatctatatag
agaatcattgtctgaggcggaaataagcagcatgcatcttgttttcagaa
gctcaccatgaagctcaaccacacagatttttgagcctgtggactctagc
atccatatctaaggctgagcttttactcaaggactgtacaatctcttgta
acaagtgttaaaatatcccagataaaagtaaatccaagattacatgctaa
tctaatctataataaactagaacttctcatattagaatgcaaattaatat
tggataataccattataaatggttactaattcagtagtcttgcatggaag
aaaaacagaactgtagtaggtttctggttttctgctctttcaggattctg
attcagtgaagctacaatggtattcagtggtctacctttataaatctact
acccacaaagaaattttaacttgggtttcagcacacatcatctaactgct
ctcttagagcagtgctatagaaacaggtgtctaaagtttcagtggtcaca
ggactgagtaaagaacagatagaaactttgaaagagagagtaaatgatag
aacaactgaaatgtttcttttcatgtcatttctgagaattggtgaattgt
gaatgaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120565527_120566668
seq2: B6Ng01-346M11.g_69_1179 (reverse)

seq1  AAATATTCATTTCACAATTCTACCCATTTCCTTCAGAAAATGAACATGAA  50
      |||| |||| |||||||||| ||| |||    |||| ||||| |||||||
seq2  AAAT-TTCA-TTCACAATTC-ACCAATT---CTCAG-AAATG-ACATGAA  42

seq1  AAGAAAACATTTTCCAGTTTTGGTTTCCTAATTCATTTTACTCTCCTTCT  100
      ||| ||||||||  |||||   |||  |||  ||| |||||||||  || 
seq2  AAG-AAACATTT--CAGTT---GTT--CTA--TCA-TTTACTCTC--TC-  78

seq1  TTTCAAAGTTTCCTATTCTTGTTTCTTTACTTCAGTCCTGGTGACCCACT  150
      ||||||||||| ||| |||   |||||||| |||||||| |||| |||||
seq2  TTTCAAAGTTT-CTA-TCT--GTTCTTTAC-TCAGTCCT-GTGA-CCACT  121

seq1  GGAAACTTTAGACACCTGTTTCTATAGCACTGCTTCTAAGAGAGCAGTTA  200
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -GAAACTTTAGACACCTGTTTCTATAGCACTGC-TCTAAGAGAGCAGTTA  169

seq1  GATGATGTGTGCTGAAACCCAAGTTAAAATTTCTTTGTGGGTAGTAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTGTGCTGAAACCCAAGTTAAAATTTCTTTGTGGGTAGTAGATT  219

seq1  TATAAAGGTAGACCACTGAATACCATTGTAGCTTCACTGAATCAGAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGTAGACCACTGAATACCATTGTAGCTTCACTGAATCAGAATCC  269

seq1  TGAAAGAGCAGAAAACCAGAAACCTACTACAGTTCTGTTTTTCTTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGCAGAAAACCAGAAACCTACTACAGTTCTGTTTTTCTTCCATG  319

seq1  CAAGACTACTGAATTAGTAACCATTTATAATGGTATTATCCAATATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTACTGAATTAGTAACCATTTATAATGGTATTATCCAATATTAAT  369

seq1  TTGCATTCTAATATGAGAAGTTCTAGTTTATTATAGATTAGATTAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCTAATATGAGAAGTTCTAGTTTATTATAGATTAGATTAGCATG  419

seq1  TAATCTTGGATTTACTTTTATCTGGGATATTTTAACACTTGTTACAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGGATTTACTTTTATCTGGGATATTTTAACACTTGTTACAAGAG  469

seq1  ATTGTACAGTCCTTGAGTAAAAGCTCAGCCTTAGATATGGATGCTAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGTCCTTGAGTAAAAGCTCAGCCTTAGATATGGATGCTAGAGT  519

seq1  CCACAGGCTCAAAAATCTGTGTGGTTGAGCTTCATGGTGAGCTTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTCAAAAATCTGTGTGGTTGAGCTTCATGGTGAGCTTCTGAAA  569

seq1  ACAAGATGCATGCTGCTTATTTCCGCCTCAGACAATGATTCTCTATATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGCATGCTGCTTATTTCCGCCTCAGACAATGATTCTCTATATAG  619

seq1  ATAAGTGAAGAAATAGTGGAGGTGGTATAAGGAAACTCTGTAGTGATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAAGAAATAGTGGAGGTGGTATAAGGAAACTCTGTAGTGATGTG  669

seq1  TGGAGGAGCCGATAATGGAAGTTGCACACACCCAAGATGGAGGCTGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGCCGATAATGGAAGTTGCACACACCCAAGATGGAGGCTGGACA  719

seq1  AAAGCCTTGAGTGAGAAGCAAGGCCAAAAGACTCAATCATTCCTCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTGAGTGAGAAGCAAGGCCAAAAGACTCAATCATTCCTCAGCAG  769

seq1  GGGACAGAAGGATTGCAAGGAATGAGAAAGTACTTAGTGACCATCCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAAGGATTGCAAGGAATGAGAAAGTACTTAGTGACCATCCATGT  819

seq1  CCCACCATTTCCAGACATTTCTCTATGGTGAGTAATTATTTATAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATTTCCAGACATTTCTCTATGGTGAGTAATTATTTATAAAAAAA  869

seq1  GAAAATATTTTAAAACTTCTTTTGACTTTAATAAGTATCATATTATATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTTAAAACTTCTTTTGACTTTAATAAGTATCATATTATATAA  919

seq1  CTCAAGGTTGACATACAAAGATATTTACTGTTTTTTTTTGTTTGTTTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTTGACATACAAAGATATTTACTGTTTTTTTTTGTTTGTTTCTG  969

seq1  CTCCCTCACTGTCTTCCCTTTCTCTCCCTCCTTTCCTTTTGGTGAAAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACTGTCTTCCCTTTCTCTCCCTCCTTTCCTTTTGGTGAAAGAT  1019

seq1  ATAAAACTCAAGACCTCTTAAATACTTAGCCAGTGTTCTACTGCTGAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCAAGACCTCTTAAATACTTAGCCAGTGTTCTACTGCTGAGCT  1069

seq1  ACATCTCTCATCCCACCTCTATAGTCAAATTACCCTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCATCCCACCTCTATAGTCAAATTACCCTGAATTC  1111