BAC Information

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BAC

Clone NameB6Ng01-347N16
Chromosome12 (Build37)
Map Location 35,712,358 - 35,838,424
singlet/doubletdoublet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347N16.bB6Ng01-347N16.g
ACCGA129330GA129331
length1,1431,162
definitionB6Ng01-347N16.b B6Ng01-347N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,712,358 - 35,713,524)(35,837,270 - 35,838,424)
sequence
gaattctttttagtgcactaggtatagtgaacccaaactacaaaggctgg
cataatattgctccagtcaggtgagcagggctcacaaagccccatgtgtc
atgcttacccaagcaataaattacttttcagacaaaaatcgccctctgaa
attgctttagcttttcctgaagtaaaggcattgaatgtgaatggttggga
gcatgttattttgctttttcaagttcaattatttttctgcttgatagcta
gcatcacaagagaacaagataggttcttatattttaccattttctcactc
atactgagtccggttttaatttttcttcaataatgattcttccaatttca
taactcggcctctaagcatagaagtctgttttcaagtaatagtaaaaaat
ctgggaaacgggtagaagatcactgagacttgtgtcactgcatagcacac
gcaggtctgccccaggttgccatcctcctgccccctttttcagtgtgcta
gggtagctgaggtgtgtcattgcatctgactcctcattggactttaatac
ctaatatcaagttatttctaaggatacacagaagctactctttaaagttt
tagtggaataaagacaccgatttcttgttagatgttcatcttacttaaaa
tttcataaatccagagaatagaaaaaatgcctattttagaatctcttgag
agatgtgctaaaaatattacacatacacaaataggctagaatgtgaagaa
agcaaagaagatcaaataaaaacctaatgttcctctgggatttcaaactt
tgaggaaggcctcaaatctaggttaagaaatcaggtgaagacaaactcag
atcatcctcaggtgcctgtagttactgctggacgagggcaaagatgctga
gagaattctagcacacagagctatttatttgggttatttgattcgtgtga
acgttggtgagagattatggatttatagtcctttcgtgaatcggatggta
gccacaaccctgctcagggcaaatgcacttaatcatcacacaagtttgta
cagttcgggagttgcagcacacgagcatgccctgacgcactggcctttat
actagtcagactcactgcagaaggagagtggtcatgttgtcag

gaattcaaaattcaggaaaacactttgcctatgactgtagtatcactata
atggaaacaattatggccaaccaaagaaggaggtggtcttggaggttgtg
caatacagagttccagggggctttctgtggagtcaggtatagcgatgggt
aaagggaataaatacagcaaggcccacatgtgctaagattttccatcacc
aaactgaaacttaagctgtttgcttctgacagttgaccttcatagagatg
gaaatgacagctaaggccagtgaagccaacaagattgtttatttcttata
aaaatgtcccgcccactgcttcttgtctaatcttccctctgctttctgct
gcctataaaccatttgcgctctgcagttcactggcactcattccgatttt
gcagacaggatgctgcctgattcacaggtcattttaaaaaggcaactcaa
tcttggaaactaaatctgttgacattttgttctttgtattcattctgcca
tgtaatgtgctctgccgtcatacaagcatgctggtctatccagacttctt
actggagttccatttccctttcacagttggtttgtcatgactcagggtcg
accttctctttttttctggagagtagctcaatcctaagtcatcttttgat
atttttaaattttatttatttacattccaaatgttgccctcctttcctgg
cctcccctctaagagttcttcaccttatcctccctcccctttgcctctga
gacggttgattaacagaatactcttaatacccaggaaaacttacaaaata
gaaatcccttctaccccttgtgatagtgttgttaacaattaccaaaaacc
ttaaaataactcatttttcctctgtcgcgcccgctctcgaccagcaagaa
cgacgcgaccaccagtcctttctaacagtagtttattcagtcctgattct
tcttgtttattatctcccccgaactctgggccttcttcactccttttata
ctcttcttctcattccactcaccgcaggccacgccctcctcgccagtcac
gaggcttcaggtatcaaggcagcaggcaatcttcccatctaatgtattca
cctgtatcctgatacaccctgcccagcactcagagtttgtggtctttaat
gagggagtcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35712358_35713524
seq2: B6Ng01-347N16.b_51_1193

seq1  GAATTCTTTTTAGTGCACTAGGTATAGTGAACCCAAACTACAAAGGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTGCACTAGGTATAGTGAACCCAAACTACAAAGGCTGG  50

seq1  CATAATATTGCTCCAGTCAGGTGAGCAGGGCTCACAAAGCCCCATGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTGCTCCAGTCAGGTGAGCAGGGCTCACAAAGCCCCATGTGTC  100

seq1  ATGCTTACCCAAGCAATAAATTACTTTTCAGACAAAAATCGCCCTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACCCAAGCAATAAATTACTTTTCAGACAAAAATCGCCCTCTGAA  150

seq1  ATTGCTTTAGCTTTTCCTGAAGTAAAGGCATTGAATGTGAATGGTTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTAGCTTTTCCTGAAGTAAAGGCATTGAATGTGAATGGTTGGGA  200

seq1  GCATGTTATTTTGCTTTTTCAAGTTCAATTATTTTTCTGCTTGATAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTATTTTGCTTTTTCAAGTTCAATTATTTTTCTGCTTGATAGCTA  250

seq1  GCATCACAAGAGAACAAGATAGGTTCTTATATTTTACCATTTTCTCACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAAGAGAACAAGATAGGTTCTTATATTTTACCATTTTCTCACTC  300

seq1  ATACTGAGTCCGGTTTTAATTTTTCTTCAATAATGATTCTTCCAATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGTCCGGTTTTAATTTTTCTTCAATAATGATTCTTCCAATTTCA  350

seq1  TAACTCGGCCTCTAAGCATAGAAGTCTGTTTTCAAGTAATAGTAAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCGGCCTCTAAGCATAGAAGTCTGTTTTCAAGTAATAGTAAAAAAT  400

seq1  CTGGGAAACGGGTAGAAGATCACTGAGACTTGTGTCACTGCATAGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAACGGGTAGAAGATCACTGAGACTTGTGTCACTGCATAGCACAC  450

seq1  GCAGGTCTGCCCCAGGTTGCCATCCTCCTGCCCCCTTTTTCAGTGTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTGCCCCAGGTTGCCATCCTCCTGCCCCCTTTTTCAGTGTGCTA  500

seq1  GGGTAGCTGAGGTGTGTCATTGCATCTGACTCCTCATTGGACTTTAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTGAGGTGTGTCATTGCATCTGACTCCTCATTGGACTTTAATAC  550

seq1  CTAATATCAAGTTATTTCTAAGGATACACAGAAGCTACTCTTTAAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCAAGTTATTTCTAAGGATACACAGAAGCTACTCTTTAAAGTTT  600

seq1  TAGTGGAATAAAGACACCGATTTCTTGTTAGATGTTCATCTTACTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAATAAAGACACCGATTTCTTGTTAGATGTTCATCTTACTTAAAA  650

seq1  TTTCATAAATCCAGAGAATAGAAAAAATGCCTATTTTAGAATCTCTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAATCCAGAGAATAGAAAAAATGCCTATTTTAGAATCTCTTGAG  700

seq1  AGATGTGCTAAAAATATTACACATACACAAATAGGCTAGAATGTGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTAAAAATATTACACATACACAAATAGGCTAGAATGTGAAGAA  750

seq1  AGCAAAGAAGATCAAATAAAAACCTAATGTTCCTCTGGGATTTCAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAAGATCAAATAAAAACCTAATGTTCCTCTGGGATTTCAAACTT  800

seq1  TGAGGAAGGCCTCAAATCTAGGTTAAGAAATCAGGTGAAGACAAACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGGCCTCAAATCTAGGTTAAGAAATCAGGTGAAGACAAACTCAG  850

seq1  ATCATCCTCAGGTGCCTGTAGTTACTGCTGGACGAGGGCAAAAGATGCTG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCATCCTCAGGTGCCTGTAGTTACTGCTGGACGAGGGC-AAAGATGCTG  899

seq1  AGAGAATTCTAGCACACAGAGCTATTTATTTGGTTATTTTGATTCGTGTG  950
      ||||||||||||||||||||||||||||||||| |  |||||||||||||
seq2  AGAGAATTCTAGCACACAGAGCTATTTATTTGGGTTATTTGATTCGTGTG  949

seq1  AACGTTGGTGAGAGATTATGGATTTATAGTCCTTTCGTGAATCGGATGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGGTGAGAGATTATGGATTTATAGTCCTTTCGTGAATCGGATGGT  999

seq1  AGCCACAAACCCTGCTCCAGGGCAAAAATGCACTTAAAATCAATCACACA  1050
      |||||| ||||||||| ||||||  ||||||||||  |||| ||||||||
seq2  AGCCAC-AACCCTGCT-CAGGGC--AAATGCACTT--AATC-ATCACACA  1042

seq1  AAGTTTTGTACAGTTTCGGGAAGTTTGCAGGCACACCGAGGCATGCCCCT  1100
      |   ||||||||| |||||||   ||||| ||||| ||| ||||| ||||
seq2  A--GTTTGTACAG-TTCGGGA--GTTGCA-GCACA-CGA-GCATG-CCCT  1083

seq1  GACCGCACCGGGCTTTATACTAGTCAGGACTCACTGCAGATAGGAAAGAG  1150
      || ||||| || |||||||||||||| ||||||||||||| |||  ||||
seq2  GA-CGCACTGGCCTTTATACTAGTCA-GACTCACTGCAGA-AGG--AGAG  1128

seq1  TGGGTTCATGTTGTCAG  1167
      |||  ||||||||||||
seq2  TGG--TCATGTTGTCAG  1143


seq1: chr12_35837270_35838424
seq2: B6Ng01-347N16.g_69_1230 (reverse)

seq1  CCTGACTTCCTCATATAAGA-CACAAACATCTTGAGTGCTGCGCA-GGTG  48
      ||||||| ||||||  |||| ||||||| || ||||||||| ||| ||||
seq2  CCTGACTCCCTCATTAAAGACCACAAAC-TC-TGAGTGCTGGGCAGGGTG  48

seq1  TACCAGGATACAGGTGAATCCAATTTGGTGG--AGATTTGCCCCTGCTGC  96
      || |||||||||||||||| | ||| | |||  |||||    ||||||||
seq2  TATCAGGATACAGGTGAATAC-ATTAGATGGGAAGATT---GCCTGCTGC  94

seq1  CCTGATTAACTGAAGCCTCGTGACTGGCGA-GAGGGCGTGGCCTGCGGTG  145
      | ||| || ||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGA-TACCTGAAGCCTCGTGACTGGCGAGGAGGGCGTGGCCTGCGGTG  143

seq1  AGTGG-ATGAGA--GAGAGTATAAAAGGAGTGA--GAGGCCCAGGGTTCG  190
      ||||| ||||||   ||||||||||||||||||   |||||||| |||||
seq2  AGTGGAATGAGAAGAAGAGTATAAAAGGAGTGAAGAAGGCCCAGAGTTCG  193

seq1  GGGGAGAT-ATAAACAAGAAGAATCAGGACTGAATAAACTACTGTTAG-A  238
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  GGGGAGATAATAAACAAGAAGAATCAGGACTGAATAAACTACTGTTAGAA  243

seq1  AGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAGCGGGCGCGACAGAG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGTGGTCGCGTCGTTCTTGCTGGTCGAGAGCGGGCGCGACAGAG  293

seq1  GAAAATTGAGTTATTTTAAGG-TTTTGGTAATTGTTAACAACACTATCAC  337
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAAAATGAGTTATTTTAAGGTTTTTGGTAATTGTTAACAACACTATCAC  343

seq1  AAGGGTTAGAAGGGA-TTCTATTTTGTAAGTTTTCCTGGGTATTAAGAGT  386
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGGGGTAGAAGGGATTTCTATTTTGTAAGTTTTCCTGGGTATTAAGAGT  393

seq1  ATTCTGTTAATCAACCGTCTCAGAGGCAAAGGGGAGGGAGGATAAGGTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTAATCAACCGTCTCAGAGGCAAAGGGGAGGGAGGATAAGGTGA  443

seq1  AGAACTCTTAGAGGGGAGGCCAGGAAAGGAGGGCAACATTTGGAATGTAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTAGAGGGGAGGCCAGGAAAGGAGGGCAACATTTGGAATGTAA  493

seq1  ATAAATAAAATTTAAAAATATCAAAAGATGACTTAGGATTGAGCTACTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAATTTAAAAATATCAAAAGATGACTTAGGATTGAGCTACTCT  543

seq1  CCAGAAAAAAAGAGAAGGTCGACCCTGAGTCATGACAAACCAACTGTGAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAAAGAGAAGGTCGACCCTGAGTCATGACAAACCAACTGTGAA  593

seq1  AGGGAAATGGAACTCCAGTAAGAAGTCTGGATAGACCAGCATGCTTGTAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGGAACTCCAGTAAGAAGTCTGGATAGACCAGCATGCTTGTAT  643

seq1  GACGGCAGAGCACATTACATGGCAGAATGAATACAAAGAACAAAATGTCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAGAGCACATTACATGGCAGAATGAATACAAAGAACAAAATGTCA  693

seq1  ACAGATTTAGTTTCCAAGATTGAGTTGCCTTTTTAAAATGACCTGTGAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTAGTTTCCAAGATTGAGTTGCCTTTTTAAAATGACCTGTGAAT  743

seq1  CAGGCAGCATCCTGTCTGCAAAATCGGAATGAGTGCCAGTGAACTGCAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCATCCTGTCTGCAAAATCGGAATGAGTGCCAGTGAACTGCAGA  793

seq1  GCGCAAATGGTTTATAGGCAGCAGAAAGCAGAGGGAAGATTAGACAAGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAATGGTTTATAGGCAGCAGAAAGCAGAGGGAAGATTAGACAAGAA  843

seq1  GCAGTGGGCGGGACATTTTTATAAGAAATAAACAATCTTGTTGGCTTCAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGCGGGACATTTTTATAAGAAATAAACAATCTTGTTGGCTTCAC  893

seq1  TGGCCTTAGCTGTCATTTCCATCTCTATGAAGGTCAACTGTCAGAAGCAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAGCTGTCATTTCCATCTCTATGAAGGTCAACTGTCAGAAGCAA  943

seq1  ACAGCTTAAGTTTCAGTTTGGTGATGGAAAATCTTAGCACATGTGGGCCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAAGTTTCAGTTTGGTGATGGAAAATCTTAGCACATGTGGGCCT  993

seq1  TGCTGTATTTATTCCCTTTACCCATCGCTATACCTGACTCCACAGAAAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATTTATTCCCTTTACCCATCGCTATACCTGACTCCACAGAAAGC  1043

seq1  CCCCTGGAACTCTGTATTGCACAACCTCCAAGACCACCTCCTTCTTTGGT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGAACTCTGTATTGCACAACCTCCAAGACCACCTCCTTCTTTGGT  1093

seq1  TGGCCATAATTGTTTCCATTATAGTGATACTACAGTCATAGGCAAAGTGT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAATTGTTTCCATTATAGTGATACTACAGTCATAGGCAAAGTGT  1143

seq1  TTTCCTGAATTTTGAATTC  1155
      |||||||||||||||||||
seq2  TTTCCTGAATTTTGAATTC  1162


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