BAC Information

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BAC

Clone NameB6Ng01-348D20
Chromosome12 (Build37)
Map Location 10,245,122 - 10,299,467
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348D20.bB6Ng01-348D20.g
ACCGA129591GA129592
length4411,058
definitionB6Ng01-348D20.b B6Ng01-348D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,245,122 - 10,245,562)(10,298,415 - 10,299,467)
sequence
gaattctttcccagaatatggatctcaccgatttagttagattagttgac
catgaacccctgaatgtatctttcccttcccacaggactggtgttagaga
tatacactatgattagcatttacatacgtgctggggacataaatgtaggg
ctcagtgcttgtgtgccacactgaacagacaacattccaagttcatttaa
acaagtaatgtttttaatgtatttatttttatcttatatgtataagtgtt
ttgccagcatacacacacacacacatacacacatatatatgtatggatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatgtatgtatgtgtgagagtgtgacatcataacccctggaacta
gagtaataagctattataattgattgcagaagcggggtgtg

gaattcttgaacaaggcaaatgaaagcttcagcactcaatatctgaacac
cgaatgctagttacaggatacagatttgcaagccagggttatgagcctct
ccgagctggctcagtctgtgttgatacaagaagagtacaggtggcctttc
tctggagacagaatagctgtaaacataggcatcagctgtgactattatca
ccttccttttacgtctcatccatgggtgagattaactcgactcagctcta
agaaagagatttatttttctctctgcttatacagattcaaatatgtggat
acccaaagaggctgagcaaaggagtgtaatacaaacattcccaacatcac
gttgcctcctaaaaggaaagaaagcccatgggagcaaagataaaatgtga
gacacaacacagtcttccactgcatgggtcatcatgagaggggtgacaca
accctacaatttggggtgtctgtggatgtgttgcactgtcctgggtcaat
cattgaccccctttactttctaatctgtccacttggaaagtggacagatt
actcaggatacagtacactcccattttcttttttaaaactggaaggagac
tgctgttaatctttgaaactttattccaagatccagttttatatcttgga
tatcttgcaaaggtatatagtgcttttcccatgtgtggagatttggaatt
gctaagcattttgttcagagcctttgaaatcttagttctcatcctctcca
tcttctttccttcttttccttgttctccttttctctttctttcctggcat
tttccttttcctttgtcttccttccctctcccctcctgttctctcttctt
tcttcatctcatatcgccattcttttctttcttgttctattcctcttttg
tttcttttgtagccacaaagaattttcttttaggtttagctcactttgaa
tagagtacgtttggctacacaaataccagcagtatatctcgagcactgat
tatccagcactcattttaaaattatttatttatgcaaacagattccgaat
tatgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10245122_10245562
seq2: B6Ng01-348D20.b_50_490

seq1  GAATTCTTTCCCAGAATATGGATCTCACCGATTTAGTTAGATTAGTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAGAATATGGATCTCACCGATTTAGTTAGATTAGTTGAC  50

seq1  CATGAACCCCTGAATGTATCTTTCCCTTCCCACAGGACTGGTGTTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCCCTGAATGTATCTTTCCCTTCCCACAGGACTGGTGTTAGAGA  100

seq1  TATACACTATGATTAGCATTTACATACGTGCTGGGGACATAAATGTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTATGATTAGCATTTACATACGTGCTGGGGACATAAATGTAGGG  150

seq1  CTCAGTGCTTGTGTGCCACACTGAACAGACAACATTCCAAGTTCATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTTGTGTGCCACACTGAACAGACAACATTCCAAGTTCATTTAA  200

seq1  ACAAGTAATGTTTTTAATGTATTTATTTTTATCTTATATGTATAAGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAATGTTTTTAATGTATTTATTTTTATCTTATATGTATAAGTGTT  250

seq1  TTGCCAGCATACACACACACACACATACACACATATATATGTATGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCATACACACACACACACATACACACATATATATGTATGGATAT  300

seq1  ATATATATATATATATATATATATATATATATATATATATATATCATAAG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  ATATATATATATATATATATATATATATATATATATATATATAT-ATATA  349

seq1  CATGT-TTGGTACCCATGTAGGACAAAAGGACATCAGAACCCCTGGAACT  399
       || | |  |||   ||||  || |    ||||||| |||||||||||||
seq2  TATATATATGTATGTATGTGTGAGAGTGTGACATCATAACCCCTGGAACT  399

seq1  AGAGTAATAAGCTATTATAAGTGATTGCAGAAGCGGGGTGTG  441
      |||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGTAATAAGCTATTATAATTGATTGCAGAAGCGGGGTGTG  441


seq1: chr12_10298415_10299467
seq2: B6Ng01-348D20.g_64_1121 (reverse)

seq1  TGTACATAA-TCGG-ATCTGTTTGCAT-AATAAATAATTTTTAAATG-GT  46
      ||||||||| |||| |||||||||||| ||||||||||||| ||||| ||
seq2  TGTACATAATTCGGAATCTGTTTGCATAAATAAATAATTTTAAAATGAGT  50

seq1  GCTGGATAATTCAGTGCTCGAGATATACTGCTGGTATTTGTGTAGCC-AA  95
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GCTGGATAA-TCAGTGCTCGAGATATACTGCTGGTATTTGTGTAGCCAAA  99

seq1  CGTACTCTATTCAAAGTG-GCTAAACCTAAAAGAAAATTCTTTGTGGCTA  144
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CGTACTCTATTCAAAGTGAGCTAAACCTAAAAGAAAATTCTTTGTGGCTA  149

seq1  CAAAAGAAACAAAAGAGGAATAGAACAAGAAAGAAAAGAATGGCGATATG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAACAAAAGAGGAATAGAACAAGAAAGAAAAGAATGGCGATATG  199

seq1  AGATGAAGAAAGAAGAGAGAACAGGAGGGGAGAGGGAAGGAAGACAAAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGAAAGAAGAGAGAACAGGAGGGGAGAGGGAAGGAAGACAAAGG  249

seq1  AAAAGGAAAATGCCAGGAAAGAAAGAGAAAAGGAGAACAAGGAAAAGAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAATGCCAGGAAAGAAAGAGAAAAGGAGAACAAGGAAAAGAAG  299

seq1  GAAAGAAGATGGAGAGGATGAGAACTAAGATTTCAAAGGCTCTGAACAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGATGGAGAGGATGAGAACTAAGATTTCAAAGGCTCTGAACAAA  349

seq1  ATGCTTAGCAATTCCAAATCTCCACACATGGGAAAAGCACTATATACCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGCAATTCCAAATCTCCACACATGGGAAAAGCACTATATACCTT  399

seq1  TGCAAGATATCCAAGATATAAAACTGGATCTTGGAATAAAGTTTCAAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATATCCAAGATATAAAACTGGATCTTGGAATAAAGTTTCAAAGA  449

seq1  TTAACAGCAGTCTCCTTCCAGTTTTAAAAAAGAAAATGGGAGTGTACTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAGTCTCCTTCCAGTTTTAAAAAAGAAAATGGGAGTGTACTGT  499

seq1  ATCCTGAGTAATCTGTCCACTTTCCAAGTGGACAGATTAGAAAGTAAAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGTAATCTGTCCACTTTCCAAGTGGACAGATTAGAAAGTAAAGG  549

seq1  GGGTCAATGATTGACCCAGGACAGTGCAACACATCCACAGACACCCCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAATGATTGACCCAGGACAGTGCAACACATCCACAGACACCCCAAA  599

seq1  TTGTAGGGTTGTGTCACCCCTCTCATGATGACCCATGCAGTGGAAGACTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGTTGTGTCACCCCTCTCATGATGACCCATGCAGTGGAAGACTG  649

seq1  TGTTGTGTCTCACATTTTATCTTTGCTCCCATGGGCTTTCTTTCCTTTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCTCACATTTTATCTTTGCTCCCATGGGCTTTCTTTCCTTTTA  699

seq1  GGAGGCAACGTGATGTTGGGAATGTTTGTATTACACTCCTTTGCTCAGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAACGTGATGTTGGGAATGTTTGTATTACACTCCTTTGCTCAGCC  749

seq1  TCTTTGGGTATCCACATATTTGAATCTGTATAAGCAGAGAGAAAAATAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGTATCCACATATTTGAATCTGTATAAGCAGAGAGAAAAATAAA  799

seq1  TCTCTTTCTTAGAGCTGAGTCGAGTTAATCTCACCCATGGATGAGACGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTAGAGCTGAGTCGAGTTAATCTCACCCATGGATGAGACGTA  849

seq1  AAAGGAAGGTGATAATAGTCACAGCTGATGCCTATGTTTACAGCTATTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGTGATAATAGTCACAGCTGATGCCTATGTTTACAGCTATTCT  899

seq1  GTCTCCAGAGAAAGGCCACCTGTACTCTTCTTGTATCAACACAGACTGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAGAAAGGCCACCTGTACTCTTCTTGTATCAACACAGACTGAG  949

seq1  CCAGCTCGGAGAGGCTCATAACCCTGGCTTGCAAATCTGTATCCTGTAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCGGAGAGGCTCATAACCCTGGCTTGCAAATCTGTATCCTGTAAC  999

seq1  TAGCATTCGGTGTTCAGATATTGAGTGCTGAAGCTTTCATTTGCCTTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCGGTGTTCAGATATTGAGTGCTGAAGCTTTCATTTGCCTTGTT  1049

seq1  CAAGAATTC  1053
      |||||||||
seq2  CAAGAATTC  1058


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