BAC Information

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BAC

Clone NameB6Ng01-349L04
Chromosome12 (Build37)
Map Location 7,265,573 - 7,407,541
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L04.bB6Ng01-349L04.g
ACCGA130615GA130616
length1,1751,150
definitionB6Ng01-349L04.b B6Ng01-349L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,406,377 - 7,407,541)(7,265,573 - 7,266,727)
sequence
gaattctagtgatttctttgttgctagttctgttactagacttctgtctt
gaagtcctcaggaacattcaccagaacacagtcctattttctctgagctg
ctcttagttgtcacatgccctagcatccaggcatcaaattcaccaggcat
ggggatttctccacaccagtgttacttctcagtcttgagaagataagaga
gaggtggtcttaaggcagattgtcttgaccctttttcttcagcttactgt
atatcctaattttctcctttcttcgaactctccttggatgatgtcacctt
tgccctggtttaaaagactctctattatgccaaaggccctcaagcagtag
cttcagattttcctcactccctaactaataaaacacaaatgaatatattg
tctctagtctgggccatcctataaatgttcagcaagctttctgaatggag
gtagaatgggagtaatgcctggagattgattgaaagaaaacctaatttat
agcatttgtctactttcctggtgtaaatatctctatcataactaattgta
aactatctctgaaatatcaactagttcacagaatcctaagactatactgt
cctttctttaccaagaaaaaaatatcctacaactcctatggatttcatca
caagactcttgctaccttgatcttcatttattttctcaggcacattactt
gagaaaagcacccatttcaggtgatggattctagttctttctctgtctga
aattccttcctttaatattgaattctcctcataatatagtgtgagaacat
tgtcactacttatgtctcatcagatttcagggccccccttgttgagaatt
ttctttgaaatcctacaagttatcatattatcattctcccatgtatcagc
aagtagtaatcctctttgaatggttcaccatttgatgtttgccttacata
tataatttatttaatatgcttcttgcctgggcttggaaatatctctctaa
aacccccagagaccttatctatcatgccacacctggtgttatcctcagtg
ctaggattggtgccccaaccacctagttgctccattgaaaaaacaaatca
atgaataaaataacattcccagcaccattgaatttggcttgcttacatgt
ctagtataactcccaaatccatatt

gaattctatggatctcctcccataaacagaagccatcagaaataaaatac
tttgactttactctaaactttccaaggcttcctggtgcttattggcttct
gagaatgattagccaggtatagataagttgcagcaatatttatatttgga
agaataaaacattaaatgtgtgaaagtcatgattcttttgggccacaatg
ggccagaggtatattctcacttcttattttgtgttgtcacaagcatgaag
ggctatgaattctcctctgaattttacttgtgtatcccccatgtgttgtt
ctgctgctttccagagaatgtgaaagtttcttgaatttcttttaagagct
ttaaggaatgcatgaagaggtgactcagttgtataaaaacaaaacaaaac
aaaacaaacaaccaaaaccaaataaaaagcttcttgctgatccaaagagt
gggagttcacttcacaacctatttctggtaggctgctcacaattacctgt
taactccagcttcaaagggtgtgacgcccttgtctagccttagttggcat
acgtatacacacatataaatatacacacagaaacatagacacagacacac
agtgagtcacacacacacacacacagacacacgagggagacagagagaca
gcgagagacaaagggtactgacgggagagaagggagagctgagacagaga
tgtaaagtgaataaataattaatggggagaattctttacgaatacttaaa
aatatcttacagtacatactctacatcattaacctatctgtttcattata
caagaatcaggacactcatctctgcacaccatttctttatacttcggtgt
aagggagtttttctgtgtacttcagatatgttattaaaaggcaccacatg
catcttcacttttagaatgatgagctccttggttgggttgtcatttacca
cagtgtttacatgtgtcttgtccctttttctccacccttctgtacattga
ttccagtggcatcattttgttcacttgtttgaaagtgtcggtaccacttt
cattttgaaacatacttttagactataactatatttaatgtagcagaaac
ctgttgtttgtggttgttgttggttgtttttaaccacttcaaccctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7406377_7407541
seq2: B6Ng01-349L04.b_49_1223 (reverse)

seq1  AATAT-GATTTTGGAGTTATTACTAAGACCATGTAAGCAAGCAAAAATCA  49
      ||||| ||||| ||||||| |||| ||| ||||||||||||| ||| |||
seq2  AATATGGATTTGGGAGTTA-TACT-AGA-CATGTAAGCAAGCCAAATTCA  47

seq1  ATTGTGCTGGAAATGTTATTTTATTCATTGATTTGTTTTTCAAATTGAGC  99
      || ||||||| |||||||||||||||||||||||||||||  ||| ||||
seq2  ATGGTGCTGGGAATGTTATTTTATTCATTGATTTGTTTTTTCAATGGAGC  97

seq1  -ACTAGGTG--TTGGGCACCACTCCTAGCACTGAGGATAACAC--AGTGT  144
       ||||||||  | |||||||| |||||||||||||||||||||   ||||
seq2  AACTAGGTGGTTGGGGCACCAATCCTAGCACTGAGGATAACACCAGGTGT  147

seq1  -GCATGATAGATAAGGTCTCT-GGGGTTTTAGAGAAGATA-TTCCA--GC  189
       |||||||||||||||||||| |||||||||||| ||||| |||||   |
seq2  GGCATGATAGATAAGGTCTCTGGGGGTTTTAGAG-AGATATTTCCAAGCC  196

seq1  CAGGCAAGAAGCATA-TAAATAAA-TATATATGTTAGGCAAACATCAAAT  237
      ||||||||||||||| |||||||| ||||||||| |||||||||||||||
seq2  CAGGCAAGAAGCATATTAAATAAATTATATATGTAAGGCAAACATCAAAT  246

seq1  GGTGAACCATTCAAAGAGGATTACTACTTGCTGATACATGGGAGAATGAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACCATTCAAAGAGGATTACTACTTGCTGATACATGGGAGAATGAT  296

seq1  AATATGATAACTTGTAGGATTTTCAAAG-AAATTCTCAACAAGGGGGGCC  336
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AATATGATAACTTGTAGGA-TTTCAAAGAAAATTCTCAACAAGGGGGGCC  345

seq1  CTGAAATCTGATGAGACATAAGTAGTGACAATGTTCTCACACTATATTAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTGATGAGACATAAGTAGTGACAATGTTCTCACACTATATTAT  395

seq1  GAGGAGAATTCAATATT-AAGGAAGGAATTTCAGACAGAGAAAGAACTAG  435
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGAGAATTCAATATTAAAGGAAGGAATTTCAGACAGAGAAAGAACTAG  445

seq1  AATCCATCACCTGAAATGGGTGCTTTTCTCAAGTAATGTGCCTGAGAAAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCACCTGAAATGGGTGCTTTTCTCAAGTAATGTGCCTGAGAAAA  495

seq1  TAAATGAAGATCAAGGTAGCAAGAGTCTTGTGATGAAATCCATAGGAGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGATCAAGGTAGCAAGAGTCTTGTGATGAAATCCATAGGAGTT  545

seq1  GTAGGATATTTTTTTCTTGGTAAAGAAAGGACAGTATAGTCTTAGGATTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATATTTTTTTCTTGGTAAAGAAAGGACAGTATAGTCTTAGGATTC  595

seq1  TGTGAACTAGTTGATATTTCAGAGATAGTTTACAATTAGTTATGATAGAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTAGTTGATATTTCAGAGATAGTTTACAATTAGTTATGATAGAG  645

seq1  ATATTTACACCAGGAAAGTAGACAAATGCTATAAATTAGGTTTTCTTTCA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACACCAGGAAAGTAGACAAATGCTATAAATTAGGTTTTCTTTCA  695

seq1  ATCAATCTCCAGGCATTACTCCCATTCTACCTCCATTCAGAAAGCTTGCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTCCAGGCATTACTCCCATTCTACCTCCATTCAGAAAGCTTGCT  745

seq1  GAACATTTATAGGATGGCCCAGACTAGAGACAATATATTCATTTGTGTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTATAGGATGGCCCAGACTAGAGACAATATATTCATTTGTGTTT  795

seq1  TATTAGTTAGGGAGTGAGGAAAATCTGAAGCTACTGCTTGAGGGCCTTTG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTAGGGAGTGAGGAAAATCTGAAGCTACTGCTTGAGGGCCTTTG  845

seq1  GCATAATAGAGAGTCTTTTAAACCAGGGCAAAGGTGACATCATCCAAGGA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATAGAGAGTCTTTTAAACCAGGGCAAAGGTGACATCATCCAAGGA  895

seq1  GAGTTCGAAGAAAGGAGAAAATTAGGATATACAGTAAGCTGAAGAAAAAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAAGAAAGGAGAAAATTAGGATATACAGTAAGCTGAAGAAAAAG  945

seq1  GGTCAAGACAATCTGCCTTAAGACCACCTCTCTCTTATCTTCTCAAGACT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGACAATCTGCCTTAAGACCACCTCTCTCTTATCTTCTCAAGACT  995

seq1  GAGAAGTAACACTGGTGTGGAGAAATCCCCATGCCTGGTGAATTTGATGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAACACTGGTGTGGAGAAATCCCCATGCCTGGTGAATTTGATGC  1045

seq1  CTGGATGCTAGGGCATGTGACAACTAAGAGCAGCTCAGAGAAAATAGGAC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCTAGGGCATGTGACAACTAAGAGCAGCTCAGAGAAAATAGGAC  1095

seq1  TGTGTTCTGGTGAATGTTCCTGAGGACTTCAAGACAGAAGTCTAGTAACA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTGGTGAATGTTCCTGAGGACTTCAAGACAGAAGTCTAGTAACA  1145

seq1  GAACTAGCAACAAAGAAATCACTAGAATTC  1165
      ||||||||||||||||||||||||||||||
seq2  GAACTAGCAACAAAGAAATCACTAGAATTC  1175


seq1: chr12_7265573_7266727
seq2: B6Ng01-349L04.g_67_1216

seq1  GAATTCTATGGATCTCCTCCCATAAACAGAAGCCATCAGAAATAAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGATCTCCTCCCATAAACAGAAGCCATCAGAAATAAAATAC  50

seq1  TTTGACTTTACTCTAAACTTTCCAAGGCTTCCTGGTGCTTATTGGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTACTCTAAACTTTCCAAGGCTTCCTGGTGCTTATTGGCTTCT  100

seq1  GAGAATGATTAGCCAGGTATAGATAAGTTGCAGCAATATTTATATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGATTAGCCAGGTATAGATAAGTTGCAGCAATATTTATATTTGGA  150

seq1  AGAATAAAACATTAAATGTGTGAAAGTCATGATTCTTTTGGGCCACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAACATTAAATGTGTGAAAGTCATGATTCTTTTGGGCCACAATG  200

seq1  GGCCAGAGGTATATTCTCACTTCTTATTTTGTGTTGTCACAAGCATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGTATATTCTCACTTCTTATTTTGTGTTGTCACAAGCATGAAG  250

seq1  GGCTATGAATTCTCCTCTGAATTTTACTTGTGTATCCCCCATGTGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGAATTCTCCTCTGAATTTTACTTGTGTATCCCCCATGTGTTGTT  300

seq1  CTGCTGCTTTCCAGAGAATGTGAAAGTTTCTTGAATTTCTTTTAAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTTCCAGAGAATGTGAAAGTTTCTTGAATTTCTTTTAAGAGCT  350

seq1  TTAAGGAATGCATGAAGAGGTGACTCAGTTGTATAAAAACAAAACAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATGCATGAAGAGGTGACTCAGTTGTATAAAAACAAAACAAAAC  400

seq1  AAAACAAACAACCAAAACCAAATAAAAAGCTTCTTGCTGATCCAAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAACCAAAACCAAATAAAAAGCTTCTTGCTGATCCAAAGAGT  450

seq1  GGGAGTTCACTTCACAACCTATTTCTGGTAGGCTGCTCACAATTACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCACTTCACAACCTATTTCTGGTAGGCTGCTCACAATTACCTGT  500

seq1  TAACTCCAGCTTCAAAGGGTGTGACGCCCTTGTCTAGCCTTAGTTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGCTTCAAAGGGTGTGACGCCCTTGTCTAGCCTTAGTTGGCAT  550

seq1  ACGTATACACACATATAAATATACACACAGAAACATAGACACAGACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATACACACATATAAATATACACACAGAAACATAGACACAGACACAC  600

seq1  AGTGAGTCACACACACACACACACAGACACACGAGGGAGACAGAGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCACACACACACACACACAGACACACGAGGGAGACAGAGAGACA  650

seq1  GCGAGAGACAAAGGGTACTGACGGGAGAGAAGGGAGAGCTGAGACAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGACAAAGGGTACTGACGGGAGAGAAGGGAGAGCTGAGACAGAGA  700

seq1  TGTAAAGTGAATAAATAATTAATGGGGAGAATTCTTTACGAATACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTGAATAAATAATTAATGGGGAGAATTCTTTACGAATACTTAAA  750

seq1  AATATCTTACAGTACATACTCTACATCATTAACCTATCTGTTTCATTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTACAGTACATACTCTACATCATTAACCTATCTGTTTCATTATA  800

seq1  CAAGAATCAGGACACTCATCTCTGCACACCATTTC-TTATACTTCGGTGT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGAATCAGGACACTCATCTCTGCACACCATTTCTTTATACTTCGGTGT  850

seq1  AA-GGAGTTTTTCTGTGTACTTCAGATATGTTATTAAAAGGCA-CACATG  897
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGGGAGTTTTTCTGTGTACTTCAGATATGTTATTAAAAGGCACCACATG  900

seq1  CATCTTCACTTTTAGAATGATGAGCTCCTT-GTTGGGTTGTCAATTACCA  946
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CATCTTCACTTTTAGAATGATGAGCTCCTTGGTTGGGTTGTCATTTACCA  950

seq1  CAGTGTTTTACATGTGTCTTGTCCC-TTTTCTCCACCCTTCTGTACAATG  995
      ||||| ||||||||||||||||||| ||||||||||||||||||||| ||
seq2  CAGTG-TTTACATGTGTCTTGTCCCTTTTTCTCCACCCTTCTGTACATTG  999

seq1  ATT-CAGTGGCATCATTTTGTTCACTTGTTTTGAAAAGTGTCGGTA-CAC  1043
      ||| |||||||||||||||||||||||||||   |||||||||||| |||
seq2  ATTCCAGTGGCATCATTTTGTTCACTTGTTT--GAAAGTGTCGGTACCAC  1047

seq1  CTTCATTTTGAAACATACTTTTAGGACTATAACTATTATTTTATGTAGTA  1093
       |||||||||||||||||||||| ||||||||||| ||||| |||||| |
seq2  TTTCATTTTGAAACATACTTTTA-GACTATAACTA-TATTTAATGTAGCA  1095

seq1  GAAAACTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAACCCAAC  1143
      |||| ||| |||||||  || ||| ||||| |||   |||||||||  ||
seq2  GAAACCTG-TTGTTTG--TGGTTG-TTGTTGGTT--GTTTTTAACC--AC  1137

seq1  TTCAA-CCTCATT  1155
      ||||| |||||||
seq2  TTCAACCCTCATT  1150


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