BAC Information

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BAC

Clone NameB6Ng01-350K03
Chromosome12 (Build37)
Map Location 62,429,185 - 62,430,325
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300
Downstream geneLOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K03.bB6Ng01-350K03.g
ACCGA131246GA131247
length1,1371,176
definitionB6Ng01-350K03.b B6Ng01-350K03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgaaggttgtactcatctttcatgttgatgggtgtgtgttaa
ggggttgtaaatatggtaggaaagttagtggatctggataactgaattta
ccaacttgtgcaggaattagggattgtgaccaatagtaagaattttccaa
atttgaaaggttattcaaattcaacaatttcaaataaaaaaaacatgaat
gtcagattttaagagtctcaaataatttggaaaaacaaaagcgaaaaact
agtaatgttgaacacaggacacagaaagaaagtgataaatataagtgcat
aaattctaaattatgaaagaatgataaaacaccaatatatgtgtaaatga
tcaaaagaacaaaattatttaaactgaaaacatacctataacctacagaa
ataatgaagaaacttaatgacaactagacttacaaattataagttactgc
ttggtccagagtatgagatactaattggtaataaaattaatttaattcca
ttaagaagtatgttcacctttccataacagatatctgaataaaccacatt
gagtaaactaaggacttatttcctgtcctatgacatgaggtaaggctaaa
tgtctactgttaagatggtgcgcacagatagttattggtttatcagaaat
tctgctgttatcttttgtatctggatggaactcaaggactatatatctct
cgtgttagttatcagacaccaagtaaacaacataagcaaggcatatcaaa
agcaaatggctaccatattaatgcagtccatgtttgaaaagaaacctttc
gttaaaaacccttgtccagtatatccacttatactggctacatcttgaga
cacataggctaaaattccatgaaaaattagagactgtaattttcactcat
ctctctctctctctcaatttttttttaattttatttttgagacagtgttt
ttctgtatagccccgactgtcctggaaactcactttgtagaccaggctgg
gcctcgaactcagaaatctgcctgcctctgcttcccggttgctggactaa
gtgtgtgcactacgcccgcttcactcatctctaataaaattaaatatttt
ttaaaaaaacaaagagtaaagatgactgaactttctg

gaattcaaggcccatacataaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaagtagctggatataaaattaattcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgaaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaac
ctaggatagcaaaaattcttcttaaggataaaagaacctctggtggaatc
accatgcctgacctaaagttttactacagagcaattgtggtaaaaactgc
atggtactggtatagagacagacaagtagaccaatggaatagaattgaaa
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggaa
gctaaaaccatccagtggaagaaagacagcattttcaacaaatggtgctg
gcacaactgggtgttatcatgtagaagaatgcgaatcgatccatacttat
ctctgtactagtcaaatctaatgatcaagaactcacaataaacagagaca
ctgaaacttatagaggagaagtggggaaagctgaagattgggcacagggc
aaaatctgaaccggaacgcaatgcttggacgtagattgaattgacaaatg
gaactttatgaaacctccaaaagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62429185_62430325
seq2: B6Ng01-350K03.b_47_1183 (reverse)

seq1  CAGAAAGTTCAGTTCAATCTTTTACTCTTTG--TTTTTAAAATAT-TTTA  47
      |||||||||||||   ||| |||||||||||  ||||||||| || ||||
seq2  CAGAAAGTTCAGT--CATC-TTTACTCTTTGTTTTTTTAAAAAATATTTA  47

seq1  ATTTTATTAAGAGATGAGTGAAGCCGGGCGTAGTGGCACACACCTTTAGT  97
      |||||||| |||||||||||||| |||||||||| ||||||||  |||||
seq2  ATTTTATT-AGAGATGAGTGAAG-CGGGCGTAGT-GCACACAC--TTAGT  92

seq1  CCCAGCAACCGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCGAGG-CCAG  146
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -CCAGCAACCGGGAAGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCCAG  141

seq1  CCTGGTCTACAAAGTGAG-TTCCAGGACAGTCGGGGCTATACAGAAAAAC  195
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTTCCAGGACAGTCGGGGCTATACAGAAAAAC  191

seq1  ACTGTCTCAAAAAATAAAATT-AAAAAAAATTGAGAGAGAGAGAGAGATG  244
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  ACTGTCTC-AAAAATAAAATTAAAAAAAAATTGAGAGAGAGAGAGAGATG  240

seq1  AGTGAAAATTACAGTCTCTAATTTTTCATGGAATTTTAGCCTATGTGTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATTACAGTCTCTAATTTTTCATGGAATTTTAGCCTATGTGTCT  290

seq1  CAAGATGTAGCCAGTATAAGTGGATATACTGGACAAGGGTTTTTAACGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAGCCAGTATAAGTGGATATACTGGACAAGGGTTTTTAACGAA  340

seq1  AGGTTTCTTTTCAAACATGGACTGCATTAATATGGTAGCCATTTGCTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTTTCAAACATGGACTGCATTAATATGGTAGCCATTTGCTTTT  390

seq1  GATATGCCTTGCTTATGTTGTTTACTTGGTGTCTGATAACTAACACGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCTTGCTTATGTTGTTTACTTGGTGTCTGATAACTAACACGAGA  440

seq1  GATATATAGTCCTTGAGTTCCATCCAGATACAAAAGATAACAGCAGAATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAGTCCTTGAGTTCCATCCAGATACAAAAGATAACAGCAGAATT  490

seq1  TCTGATAAACCAATAACTATCTGTGCGCACCATCTTAACAGTAGACATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAACCAATAACTATCTGTGCGCACCATCTTAACAGTAGACATTT  540

seq1  AGCCTTACCTCATGTCATAGGACAGGAAATAAGTCCTTAGTTTACTCAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACCTCATGTCATAGGACAGGAAATAAGTCCTTAGTTTACTCAAT  590

seq1  GTGGTTTATTCAGATATCTGTTATGGAAAGGTGAACATACTTCTTAATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTATTCAGATATCTGTTATGGAAAGGTGAACATACTTCTTAATGG  640

seq1  AATTAAATTAATTTTATTACCAATTAGTATCTCATACTCTGGACCAAGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTAATTTTATTACCAATTAGTATCTCATACTCTGGACCAAGCA  690

seq1  GTAACTTATAATTTGTAAGTCTAGTTGTCATTAAGTTTCTTCATTATTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTATAATTTGTAAGTCTAGTTGTCATTAAGTTTCTTCATTATTTC  740

seq1  TGTAGGTTATAGGTATGTTTTCAGTTTAAATAATTTTGTTCTTTTGATCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTATAGGTATGTTTTCAGTTTAAATAATTTTGTTCTTTTGATCA  790

seq1  TTTACACATATATTGGTGTTTTATCATTCTTTCATAATTTAGAATTTATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATATATTGGTGTTTTATCATTCTTTCATAATTTAGAATTTATG  840

seq1  CACTTATATTTATCACTTTCTTTCTGTGTCCTGTGTTCAACATTACTAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATATTTATCACTTTCTTTCTGTGTCCTGTGTTCAACATTACTAGT  890

seq1  TTTTCGCTTTTGTTTTTCCAAATTATTTGAGACTCTTAAAATCTGACATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCTTTTGTTTTTCCAAATTATTTGAGACTCTTAAAATCTGACATT  940

seq1  CATGTTTTTTTTATTTGAAATTGTTGAATTTGAATAACCTTTCAAATTTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTTTTATTTGAAATTGTTGAATTTGAATAACCTTTCAAATTTG  990

seq1  GAAAATTCTTACTATTGGTCACAATCCCTAATTCCTGCACAAGTTGGTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCTTACTATTGGTCACAATCCCTAATTCCTGCACAAGTTGGTAA  1040

seq1  ATTCAGTTATCCAGATCCACTAACTTTCCTACCATATTTACAACCCCTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTATCCAGATCCACTAACTTTCCTACCATATTTACAACCCCTTA  1090

seq1  ACACACACCCATCAACATGAAAGATGAGTACAACCTTCATAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCCATCAACATGAAAGATGAGTACAACCTTCATAGAATTC  1137


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