Query= MSMg01no045_b14.b1 MSMg01no045_b14.b1 CHROMAT_FILE:
MSMg01no045_b14.b1 PHD_FILE: MSMg01no045_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:58 2005
(471 letters)
>mm_chr12_95175594_95176464
Length = 871
Score = 690 bits (357), Expect = 0.0
Identities = 439/467 (94%), Gaps = 3/467 (0%)
Strand = Plus / Plus
Query: 3 cggaattcactaatgctaacctagtctggtgtatcaaacatactatgaagtacagatagg 62
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcactaatgctaatctagtccggtgtatcaaacatactatgaagtacagatagg 262
Query: 63 atgagattgccaaccaaagcattaatattttctcatctttactgtgaaaagtaacctgtc 122
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 263 atgagattgccaaccaaagcattaatattttctcatctttactgtgaaatgtaacttgcc 322
Query: 123 aatttgacacttattacaaaaaattatagctgattttatgactttgcaagctgatttgaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatttgacacttattacaaaaaattatagctgattttatgactttgcaagctgatttgaa 382
Query: 183 tgaagtatagctgcttatcaccttagagaaaccttccttcatcaaaagacatgcaaaata 242
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 tgaagcatagctgcttatcaccttagagaaaccttccttcatcaaaagacatgcaatata 442
Query: 243 agtctgtggataaccaggtatatttctctttaaaaatccactttacctgatagcttagct 302
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 443 ggtctgtggataaccaggtatatttctctttaaaaatccagtttacctgacagcttagct 502
Query: 303 tgtttctccaattatgtgagacattaatcaaaagcagaaaggattttctttctgtttcct 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtttctctaattatgtgagacattaatcaaaagcagaaaggattttctttctgtttcct 562
Query: 363 ttgttttctcctcctcctcctcctcctcctcctcctcctcctcctcctcttcttcttttt 422
|||||||||| || || || || || || || || || || || | |||||||||| ||
Sbjct: 563 ttgttttctcttcttcttcttcttcttcttcttcttcttcttc-t--tcttcttcttctt 619
Query: 423 ctttttcttcttcttcttcttcttcttcttcctcttcttcttcttct 469
||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_b14.g1 MSMg01no045_b14.g1 CHROMAT_FILE:
MSMg01no045_b14.g1 PHD_FILE: MSMg01no045_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:58 2005
(594 letters)
>mm_chr12_95309083_95310076
Length = 994
Score = 1133 bits (586), Expect = 0.0
Identities = 592/594 (99%)
Strand = Plus / Minus
Query: 1 ttaactatcaggaatcaaatcccagacggtttctttttctcctctgcaatggctcagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttaactatcaggaatcaaatcccagacggtttctttttctcctctgcaatggctcagttt 735
Query: 61 ccacagaacatgtgaagtcctttttcagaaggcaaggagaatcattgtacagcttacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ccacagaacatgtgaagtcctttttcagaaggcaaggagaatcattgtacagcttacatc 675
Query: 121 acaaaagaaattaaagactcacatcttcatggggttaacatagggctctattattcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acaaaagaaattaaagactcacatcttcatggggttaacatagggctctattattcttct 615
Query: 181 aagaagcttgcttagagacatacaggatattgttgattatggaaaagtcccatgtttaaa 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggaagcttgcttagagacatacaggatattgttgattatggaaaagtcccatgtttaaa 555
Query: 241 gtctttcccttctacattaaaaaaaacccacaggaaagtatcttgttaaaccgccattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtctttcccttctacattaaaaaaaacccacaggaaagtatcttgttaaaccgccattcc 495
Query: 301 aactacttccaaaagcactatctcctttcttccccaatcccttgaaacattcttaccacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aactacttccaaaagcactatctcctttcttccccaatcccttgaaacattcttaccacc 435
Query: 361 cttccagcccccaaaacacagcagctgctaagactggaattttcaggcatctgctgggga 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 434 cttccagcccccaaaacacagcagctgctaagactggaattttcaggcagctgctgggga 375
Query: 421 tgcttttcaaccacagagaaatttaggttgaaaagttcacagccaaagtttttccattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgcttttcaaccacagagaaatttaggttgaaaagttcacagccaaagtttttccattct 315
Query: 481 caaaaaggggtggctgctaaatttattatagtcataaacagatgatctttgatctccttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 caaaaaggggtggctgctaaatttattatagtcataaacagatgatctttgatctccttt 255
Query: 541 aaattaaattacttgctttttgagtgttgcttcctgggtctatagagatttctg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaattaaattacttgctttttgagtgttgcttcctgggtctatagagatttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
