BAC Information

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BAC

Clone NameMSMg01-045C09
Chromosome12 (Build37)
Map Location 74,467,443 - 74,467,821
singlet/doubletsinglet
Overlap genenone
Upstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
Downstream geneEG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C09.T7 (MSMg01no045_c09.b1)MSMg01-045C09.TJ (MSMg01no045_c09.g1)
ACCAG275852AG275853
length749787
length of high quality
(start - end)
379 (120 - 498)95 (285 - 379)
definitionCHROMAT_FILE: MSMg01no045_c09.b1 PHD_FILE: MSMg01no045_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005CHROMAT_FILE: MSMg01no045_c09.g1 PHD_FILE: MSMg01no045_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNAAGGGNNNNNNNNNNNNNNNNCCTACCTTT
TCCTCCTTATAATTGCGGCGCTAATACGACTCCTATTCCAAGAAGACCGC
GGAATCCAGGTTCTCCCATCCTTTCTCGCTTAGAAGGATGACTCTCCCGA
GGGCACTGTGCTGCCCTGTGAAGTCTCTGGTTTGGGAGAGGGTTGAAGTG
AAGGTGGGTAGCAGGTCTTTAATGGAGACAGAAAGGGCAGGGGTAGAACC
CTTCCTGAAGGTCACGTTATTTTCTATAAAGAAATGAACTGTATATTCAA
CACATCAGAGTTAGGTTTTCAAAGGGAAGGAGTAAGCTACGTAAGGCTTG
GAAATTCTTCCAGAGGAGGCGAGTGCGGGGTTTGATGGACAGTAAGAGTT
ATAAAGAGAAACACAAAGGCAACTGGATGAGTGTGGAGGCAGAGTTCACG
GGAACCCCCTTTGTAATAGGACCTCAGGCCGAGCTAGATCACCTAAAACT
CCAGACAAGGTCCTCACATCCACCAGCTTTAAGGCCTGAGAAAAAAATTA
AGTATAGGTTTTGACATGGCCAGCCCTTGAAGGCTAATAGTGCTTCTTTT
TTGGAAGATGACCGCGGTGTTCAATTGCACAGGTGACTTCCCCTTCTGTT
TTTTTAAAATCAGGTATTGCTCTACAGCCTTCCATGAAACTTGTCTCCCG
CCTTGAACAAAGTTCCAGTTAAACTTTGGCTTCCAGAAGTCTCCATCCC
TCTCCCCCCCCCCCCTCCCCCCCCCCCCTCCCCCTCTACCCCTCCTCTTT
TTTATTTTTTTCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAATCACTTCCTAGTACAC
AAGGCAGCTACTAACCATCTGGAACTCTGGTTCCAGGGGCTTCCTGGCCT
CCATAGGCCGTGAATGCACGTGGCCCATGTCAAATCTTACCAAGCCCTTT
TTTTTACTTTTTTCTTACTAGGTATTTCCTCCGTTTATATTTTCCATGCT
ATCCCAAAGGTCCCCCATATCCACCCCACCCAATCCCCTACCCACCCACT
CCCCCTTTTTGGCCCTGGCGTTGCCCTGTATTTTTTTATCTAAAGTTGGC
AAGTCCAACGGGCCTCTCTTTGCAGTGACGCCCCGACTAGGCCATCTTTT
GATCCCTACCGCCCTAGTCACCACAGCTCTGGGTTATTGTTTAGTCTATA
TTGCTGCTCCCCCCACACGCTTGCCGCTTCCCCTTTACCTCCCCGGGTAA
CATCTCCACCTCCTGCTTTGTGTGCCCGTGTGACCCATTCCTAAGTTTTA
CACGTTAAACCTTCATTGCATTCTAGTACCTCCCCCCTGTTTGTATAATC
CCCCTCGGCCCCCGTCTTCTCCTCCTCCTTTTTTTTCCCCCTTTAGCTTT
CCTCGTCTCCTATTAACCCACCCCCCCTCTCTTACCCCCCCTGTCTTCCC
TCCTTCCTCTCTTTCTCTGTCCCCTTTTCCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c09.b1 MSMg01no045_c09.b1 CHROMAT_FILE:
MSMg01no045_c09.b1 PHD_FILE: MSMg01no045_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:02 2005
         (379 letters)



>mm_chr12_74467243_74468021
          Length = 779

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttctcgcttagaaggatgactctcccgagggcactgtgctgccctgtgaagtctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cctttctcgcttagaaggatgactctcccgagggcactgtgctgccctgtgaagtctctg 520

                                                                       
Query: 61  gtttgggagagggttgaagtgaaggtgggtagcaggtctttaatggagacagaaagggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtttgggagagggttgaagtgaaggtgggtagcaggtctttaatggagacagaaagggca 460

                                                                       
Query: 121 ggggtagaacccttcctgaaggtcacgttattttctataaagaaatgaactgtatattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggggtagaacccttcctgaaggtcacgttattttctataaagaaatgaactgtatattca 400

                                                                       
Query: 181 acacatcagagttaggttttcaaagggaaggagtaagctacgtaaggcttggaaattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acacatcagagttaggttttcaaagggaaggagtaagctacgtaaggcttggaaattctt 340

                                                                       
Query: 241 ccagaggaggcgagtgcggggtttgatggacagtaagagttataaagagaaacacaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccagaggaggcgagtgcggggtttgatggacagtaagagttataaagagaaacacaaagg 280

                                                                       
Query: 301 caactggatgagtgtggaggcagagttcacgggaaccccctttgtaataggacctcaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caactggatgagtgtggaggcagagttcacgggaaccccctttgtaataggacctcaggc 220

                              
Query: 361 cgagctagatcacctaaaa 379
            ||||||||||||||||||
Sbjct: 219 tgagctagatcacctaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)