BAC Information

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BAC

Clone NameMSMg01-045E01
Chromosome12 (Build37)
Map Location 44,690,808 - 44,691,183
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E01.T7 (MSMg01no045_e01.b1)MSMg01-045E01.TJ (MSMg01no045_e01.g1)
ACCAG275931AG275932
length666685
length of high quality
(start - end)
385 (30 - 414)309 (72 - 380)
definitionCHROMAT_FILE: MSMg01no045_e01.b1 PHD_FILE: MSMg01no045_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:10 2005CHROMAT_FILE: MSMg01no045_e01.g1 PHD_FILE: MSMg01no045_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTAAACGACTCCTATACGGAGAGGATCCGCGGAATTCTTTCTT
TAGCTCTGTACCCCATTTTTAATAGGGCTATTTGTTTCTCTGGAGTCTAA
CTTCTTGAGTTCTTTGTACATATTGGATATGAGCCCTCTATGGGATGCAG
GATTAGTAAAGATCTTTTCCCAATCTGTTGGATGCCTTTTTGTCTTTGAC
AGTGTTCCTTGCCTTATAGAAGCTTTAAAATATTATGAGGTCCCTTTGTC
GATTCTTGATTTTACAACACAAGCCATTAGTGTTCTGTTCAGGTTTTTAC
ACTTCAAAAATCTTCAAAAACCTCAGTTTCTATTAAATAGTTACTGGCTT
CCTGGGAAAAGTGGCTTTTGCACAAGTCTGAAGTTCTGAGTTCAGATATG
CAGCCTGCATATAAAAGCTGGGTCTATAACCATAGTGCTAGTGAAGAGAC
CAGAGCCACTATGGTGCTTGCTGGCCCGATAATCTAACTGAAGAGATGAC
GGCAGGTACAGAAAAAGACTTGTCCTAAACAAATACTGGGAAAGCACTCC
GGGAAGACACTCCATATCAATTTCTCTAAAATTCCACTTAATGGCCCTTA
ATGGGGACAGCTCCCGAACCTATATGCTTAACCTTACACCCACTGGTCCT
ATAACACCATATGGCT
ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAAATTATATTAGTAATTATTAAGCTT
TTTTTATAATAGAACTGCCATTAAGTCCTTTCTGATGTCAAAACTTCAAT
GAGAACTCTTCCAGTCTTCAAGTGTCACTAAATAGTTGCTTCTGAGGTAG
AAAGCAGGCATTTACAACTTACAGCACATTCTAAACATTTATAAAACCAT
TAACCAAAGGTCATAAAAAGGAAACTAAGGATTTATTGTACGTGCAAGGA
CAGAAGATAAAAGATTGACTGAGCTTATCTATACCAAGCTTTAATAATAA
CTTAGTTATGGTCTTTAACTCTCCATGGAACTGTAGAGCTAGTAACAGAT
AATGAATGCTTAACCTTAATGGATATATACGTAAACATTTCTTCCGTAAA
CATCTTATTCAACTTCTAATTTGAACATACGTTCGAACTTATAGTTTACT
TATATAAAACAGGAAGCTTGAAAAATGCATGTGATCCATACATATAGAGG
ATCTAGATTCCTCCTACAAGGTACCCAAGCTAGGATCCACATCTGAGATA
TGCTAGAATACCCTCACTGGGCGCCCCTATACCGATTACCCGCAACGATC
CCTTACCGCACCAATCCACTGGCCAATAGATGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e01.b1 MSMg01no045_e01.b1 CHROMAT_FILE:
MSMg01no045_e01.b1 PHD_FILE: MSMg01no045_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:10 2005
         (385 letters)



>mm_chr12_44690599_44691383
          Length = 785

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattctttctttagctctgtaccccatttttaatagggctatttgtttctctggagtct 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattctttctttagctctgtaccccatttttaatagggctatttgtttctctggagtct 269

                                                                       
Query: 70  aacttcttgagttctttgtacatattggatatgagccctctatgggatgcaggattagta 129
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 270 aacttcttgagttctttgtacatattggatatgagccctcaatgggatgcaggattagta 329

                                                                       
Query: 130 aagatcttttcccaatctgttggatgcctttttgtctttgacagtgttccttgccttata 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagatcttttcccaatctgttggatgcctttttgtctttgacagtgttccttgccttata 389

                                                                       
Query: 190 gaagctttaaaatattatgaggtccctttgtcgattcttgattttacaacacaagccatt 249
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 390 gaagctttaaaatattatgaggtccctttgtcgattcttgattttacaacacaaaccatt 449

                                                                       
Query: 250 agtgttctgttcaggtttttacacttcaaaaatcttcaaaaacctcagtttctattaaat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtgttctgttcaggtttttacacttcaaaaatcttcaaaaacctcagtttctattaaat 509

                                                                       
Query: 310 agttactggcttcctgggaaaagtggcttttgcacaagtctgaagttctgagttcagata 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agttactggcttcctgggaaaagtggcttttgcacaagtctgaagttctgagttcagata 569

                           
Query: 370 tgcagcctgcatataa 385
           ||||||||||||||||
Sbjct: 570 tgcagcctgcatataa 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)