Query= MSMg01no047_b22.b1 MSMg01no047_b22.b1 CHROMAT_FILE:
MSMg01no047_b22.b1 PHD_FILE: MSMg01no047_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:25 2005
(633 letters)
>mm_chr12_36293574_36294606
Length = 1033
Score = 1210 bits (626), Expect = 0.0
Identities = 629/630 (99%)
Strand = Plus / Plus
Query: 4 ggaattcacatgccatgcattgcagacctaattactaaccaaaccctggaagtcaggggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatgccatgcattgcagacctaattactaaccaaaccctggaagtcaggggt 263
Query: 64 atgtcaggaaatgactcattcaaatgctttgtgctttgtgtgcagtcaggtataattagt 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtcaggaaaagactcattcaaatgctttgtgctttgtgtgcagtcaggtataattagt 323
Query: 124 gcaccttcaacaaagctgaatattaataatagagggattagattgacttctaaattaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaccttcaacaaagctgaatattaataatagagggattagattgacttctaaattaata 383
Query: 184 atgggtgttttatttatattttctttttgacacatttttttcactttttacttacttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgggtgttttatttatattttctttttgacacatttttttcactttttacttacttttt 443
Query: 244 tattagatattttctatagttacatttcaaatgttattctcttttctggtttcccctcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattagatattttctatagttacatttcaaatgttattctcttttctggtttcccctcca 503
Query: 304 aaacctccctatccccttcccggctccctgctcaccaagcacccactcttacttcttggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaacctccctatccccttcccggctccctgctcaccaagcacccactcttacttcttggc 563
Query: 364 cctacactggggcatagagccttcacaggaccagtggcctctcctcccattgatgaccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctacactggggcatagagccttcacaggaccagtggcctctcctcccattgatgaccaa 623
Query: 424 caaggccatcctctgctacatatgcagctggaaccaggagtccctccatgtgtactcttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaggccatcctctgctacatatgcagctggaaccaggagtccctccatgtgtactcttt 683
Query: 484 ggttggtggtttagtccctgggagctctgggggtactggttggttcatattgttgttcct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggttggtggtttagtccctgggagctctgggggtactggttggttcatattgttgttcct 743
Query: 544 cttatggagttgtaaaccccttcagctccttggatcctttctctagctcctccactgggg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttatggagttgtaaaccccttcagctccttggatcctttctctagctcctccactgggg 803
Query: 604 accttgtgctcagttctatggttggctcag 633
||||||||||||||||||||||||||||||
Sbjct: 804 accttgtgctcagttctatggttggctcag 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_b22.g1 MSMg01no047_b22.g1 CHROMAT_FILE:
MSMg01no047_b22.g1 PHD_FILE: MSMg01no047_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:25 2005
(567 letters)
>mm_chr12_36319704_36320666
Length = 963
Score = 615 bits (318), Expect = e-180
Identities = 470/584 (80%), Gaps = 101/584 (17%)
Strand = Plus / Minus
Query: 4 tgaataacagagcatagtctgggcttcagtgggttctttagacaa--------------- 48
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgaataacagagcatagtctgggcttcagtgggttctttagacaaataaataaataaata 526
Query: 49 ---aaa-aaa-aaataaagcaatgcaagacccacagatgaaccttttagcacttgtagtt 103
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aataaataaataaataaagcaatgcaagacccacagatgaaccttttagcacttgtagtt 466
Query: 104 atggcatgctggggactggtaacatacccttacaacttggctcatcctggagatccatga 163
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 465 atggcatgctggggattggtaacatacccttacaacttggctcatcctggagat-catga 407
Query: 164 ggacatcgtaatttctaaacctaatgttttaatatccacgcaaagagactaagttatgca 223
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggacatcgtaatttgtaagcc---tgttttaatatccacgcaaagagactaagttatgca 350
Query: 224 gttgaatgtagggaaaggctgtatataatactaatatctacttacttgagcatgaagtag 283
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttgaatgtagggaaaggctatgtataatactaatatctacttacttgagcatgaagtag 290
Query: 284 catttatgtatttaacacctaatttgtcatcagagtataaatataaatataaatataaat 343
|||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 289 catttatgtagttgacacctaatttgtcatcagagtataaatat---------------- 246
Query: 344 ataaatataaatataaatataaatataaatataaatataaatataaatataaatataaat 403
Sbjct: 246 ------------------------------------------------------------ 246
Query: 404 ataaatagcagtgccaagactcctttgcaaggtagcaggcacttaaccaaggtgagtttt 463
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 -tacacagtagtgccaagactcctttgcaaggtagcaggcacttaaccaaggtgagtttt 187
Query: 464 attttgaactgaggttggaggtgtttgctttgctctttcagtgtatgtcccaaataaaaa 523
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct: 186 attttgaactgaggttggaggtatttggtttgctctttcagcgtatgtcccaaataaaaa 127
Query: 524 ctataaataattgaatgtatagcaggcatctgctttgcctgaaa 567
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctataaataattgaatgtatagcaggcatctgctttgcctgaaa 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 963
Length adjustment: 10
Effective length of query: 557
Effective length of database: 953
Effective search space: 530821
Effective search space used: 530821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
